Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11430

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11425 and HMPREF1078_RS11430 are separated by 7 nucleotidesHMPREF1078_RS11430 and HMPREF1078_RS11435 are separated by 84 nucleotides HMPREF1078_RS11425: HMPREF1078_RS11425 - ABC transporter ATP-binding protein, at 206,413 to 207,456 _RS11425 HMPREF1078_RS11430: HMPREF1078_RS11430 - iron ABC transporter permease, at 207,464 to 208,498 _RS11430 HMPREF1078_RS11435: HMPREF1078_RS11435 - two-component regulator propeller domain-containing protein, at 208,583 to 212,614 _RS11435 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.617 kb on + strand, within HMPREF1078_RS11425at 206.664 kb on + strand, within HMPREF1078_RS11425at 206.748 kb on + strand, within HMPREF1078_RS11425at 206.797 kb on + strand, within HMPREF1078_RS11425at 207.026 kb on + strand, within HMPREF1078_RS11425at 207.026 kb on + strand, within HMPREF1078_RS11425at 207.026 kb on + strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.027 kb on - strand, within HMPREF1078_RS11425at 207.031 kb on - strand, within HMPREF1078_RS11425at 207.119 kb on + strand, within HMPREF1078_RS11425at 207.120 kb on - strand, within HMPREF1078_RS11425at 207.149 kb on + strand, within HMPREF1078_RS11425at 207.157 kb on - strand, within HMPREF1078_RS11425at 207.187 kb on + strand, within HMPREF1078_RS11425at 207.188 kb on - strand, within HMPREF1078_RS11425at 207.253 kb on + strand, within HMPREF1078_RS11425at 207.254 kb on - strand, within HMPREF1078_RS11425at 207.456 kb on + strandat 207.457 kb on - strandat 207.459 kb on - strandat 207.504 kb on + strandat 207.504 kb on + strandat 207.504 kb on + strandat 207.505 kb on - strandat 207.554 kb on + strandat 207.554 kb on + strandat 207.554 kb on + strandat 207.560 kb on - strandat 207.560 kb on - strandat 207.643 kb on + strand, within HMPREF1078_RS11430at 207.644 kb on - strand, within HMPREF1078_RS11430at 207.644 kb on - strand, within HMPREF1078_RS11430at 207.698 kb on - strand, within HMPREF1078_RS11430at 207.748 kb on + strand, within HMPREF1078_RS11430at 207.766 kb on + strand, within HMPREF1078_RS11430at 207.805 kb on - strand, within HMPREF1078_RS11430at 207.866 kb on + strand, within HMPREF1078_RS11430at 207.867 kb on - strand, within HMPREF1078_RS11430at 207.875 kb on - strand, within HMPREF1078_RS11430at 208.016 kb on - strand, within HMPREF1078_RS11430at 208.016 kb on - strand, within HMPREF1078_RS11430at 208.385 kb on - strand, within HMPREF1078_RS11430at 208.385 kb on - strand, within HMPREF1078_RS11430at 208.422 kb on + strandat 208.567 kb on + strandat 208.567 kb on + strandat 208.568 kb on - strandat 208.569 kb on + strandat 208.569 kb on + strandat 208.570 kb on - strandat 208.570 kb on - strandat 208.571 kb on + strandat 208.572 kb on - strandat 208.572 kb on - strandat 208.574 kb on + strandat 208.574 kb on + strandat 208.575 kb on - strandat 208.576 kb on + strandat 208.579 kb on + strandat 208.579 kb on + strandat 208.582 kb on + strandat 208.582 kb on + strandat 208.608 kb on + strandat 208.644 kb on + strandat 208.657 kb on + strandat 208.657 kb on + strandat 208.659 kb on + strandat 208.703 kb on + strandat 208.703 kb on + strandat 208.704 kb on - strandat 208.757 kb on + strandat 208.757 kb on + strandat 208.779 kb on + strandat 208.944 kb on + strandat 208.944 kb on + strandat 208.946 kb on + strandat 208.947 kb on - strandat 208.948 kb on + strandat 208.948 kb on + strandat 208.949 kb on - strandat 208.986 kb on + strandat 208.998 kb on + strand, within HMPREF1078_RS11435at 209.114 kb on - strand, within HMPREF1078_RS11435at 209.158 kb on + strand, within HMPREF1078_RS11435at 209.159 kb on - strand, within HMPREF1078_RS11435at 209.159 kb on - strand, within HMPREF1078_RS11435at 209.180 kb on + strand, within HMPREF1078_RS11435at 209.180 kb on + strand, within HMPREF1078_RS11435at 209.187 kb on + strand, within HMPREF1078_RS11435at 209.189 kb on + strand, within HMPREF1078_RS11435at 209.190 kb on - strand, within HMPREF1078_RS11435at 209.220 kb on - strand, within HMPREF1078_RS11435at 209.240 kb on + strand, within HMPREF1078_RS11435at 209.304 kb on + strand, within HMPREF1078_RS11435at 209.305 kb on - strand, within HMPREF1078_RS11435

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
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206,617 + HMPREF1078_RS11425 0.20 -2.4
206,664 + HMPREF1078_RS11425 0.24 -2.8
206,748 + HMPREF1078_RS11425 0.32 +0.3
206,797 + HMPREF1078_RS11425 0.37 +0.5
207,026 + HMPREF1078_RS11425 0.59 -0.9
207,026 + HMPREF1078_RS11425 0.59 +0.9
207,026 + HMPREF1078_RS11425 0.59 -2.0
207,027 - HMPREF1078_RS11425 0.59 +1.1
207,027 - HMPREF1078_RS11425 0.59 +0.7
207,027 - HMPREF1078_RS11425 0.59 -1.3
207,027 - HMPREF1078_RS11425 0.59 +1.5
207,027 - HMPREF1078_RS11425 0.59 +1.5
207,027 - HMPREF1078_RS11425 0.59 -1.1
207,031 - HMPREF1078_RS11425 0.59 -3.1
207,119 + HMPREF1078_RS11425 0.68 -0.5
207,120 - HMPREF1078_RS11425 0.68 -0.9
207,149 + HMPREF1078_RS11425 0.70 +0.7
207,157 - HMPREF1078_RS11425 0.71 +2.0
207,187 + HMPREF1078_RS11425 0.74 -2.2
207,188 - HMPREF1078_RS11425 0.74 +0.2
207,253 + HMPREF1078_RS11425 0.80 -0.1
207,254 - HMPREF1078_RS11425 0.81 +0.5
207,456 + +2.3
207,457 - -0.9
207,459 - -1.1
207,504 + -3.2
207,504 + -2.9
207,504 + -2.4
207,505 - -2.6
207,554 + -0.1
207,554 + -0.5
207,554 + -3.7
207,560 - -0.5
207,560 - +0.5
207,643 + HMPREF1078_RS11430 0.17 -2.9
207,644 - HMPREF1078_RS11430 0.17 +1.5
207,644 - HMPREF1078_RS11430 0.17 -2.3
207,698 - HMPREF1078_RS11430 0.23 -3.0
207,748 + HMPREF1078_RS11430 0.27 -2.5
207,766 + HMPREF1078_RS11430 0.29 +0.5
207,805 - HMPREF1078_RS11430 0.33 -1.1
207,866 + HMPREF1078_RS11430 0.39 -3.0
207,867 - HMPREF1078_RS11430 0.39 -0.1
207,875 - HMPREF1078_RS11430 0.40 -2.1
208,016 - HMPREF1078_RS11430 0.53 -1.7
208,016 - HMPREF1078_RS11430 0.53 -2.0
208,385 - HMPREF1078_RS11430 0.89 -1.1
208,385 - HMPREF1078_RS11430 0.89 -0.9
208,422 + -2.3
208,567 + -0.5
208,567 + -0.7
208,568 - -1.7
208,569 + -1.3
208,569 + +0.6
208,570 - +1.5
208,570 - +0.7
208,571 + +0.3
208,572 - +0.5
208,572 - +0.5
208,574 + -0.3
208,574 + -1.3
208,575 - -2.0
208,576 + -0.5
208,579 + +0.2
208,579 + +0.1
208,582 + -2.0
208,582 + -2.4
208,608 + +1.1
208,644 + -1.5
208,657 + -0.1
208,657 + +0.5
208,659 + -0.3
208,703 + -0.1
208,703 + -2.7
208,704 - -1.9
208,757 + +1.5
208,757 + -0.5
208,779 + -0.1
208,944 + -0.8
208,944 + -0.2
208,946 + +1.7
208,947 - -0.1
208,948 + -0.9
208,948 + +0.9
208,949 - -0.8
208,986 + +0.1
208,998 + HMPREF1078_RS11435 0.10 -0.3
209,114 - HMPREF1078_RS11435 0.13 -1.3
209,158 + HMPREF1078_RS11435 0.14 -0.5
209,159 - HMPREF1078_RS11435 0.14 -0.1
209,159 - HMPREF1078_RS11435 0.14 +2.1
209,180 + HMPREF1078_RS11435 0.15 -0.6
209,180 + HMPREF1078_RS11435 0.15 +0.7
209,187 + HMPREF1078_RS11435 0.15 +0.7
209,189 + HMPREF1078_RS11435 0.15 +1.0
209,190 - HMPREF1078_RS11435 0.15 +0.8
209,220 - HMPREF1078_RS11435 0.16 +1.7
209,240 + HMPREF1078_RS11435 0.16 +1.5
209,304 + HMPREF1078_RS11435 0.18 +0.6
209,305 - HMPREF1078_RS11435 0.18 -0.7

Or see this region's nucleotide sequence