Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11095 and HMPREF1078_RS11100 are separated by 2 nucleotides HMPREF1078_RS11100 and HMPREF1078_RS11105 are separated by 222 nucleotides HMPREF1078_RS11105 and HMPREF1078_RS11110 are separated by 222 nucleotides HMPREF1078_RS11110 and HMPREF1078_RS11115 are separated by 64 nucleotides
HMPREF1078_RS11095: HMPREF1078_RS11095 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 143,559 to 144,431
_RS11095
HMPREF1078_RS11100: HMPREF1078_RS11100 - (d)CMP kinase, at 144,434 to 145,126
_RS11100
HMPREF1078_RS11105: HMPREF1078_RS11105 - type IX secretion system protein PorQ, at 145,349 to 146,341
_RS11105
HMPREF1078_RS11110: HMPREF1078_RS11110 - energy transducer TonB, at 146,564 to 147,253
_RS11110
HMPREF1078_RS11115: HMPREF1078_RS11115 - polyprenyl synthetase family protein, at 147,318 to 148,292
_RS11115
Position (kb) 145
146
147 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 144.436 kb on - strand at 144.509 kb on - strand, within HMPREF1078_RS11100 at 144.509 kb on - strand, within HMPREF1078_RS11100 at 144.682 kb on - strand, within HMPREF1078_RS11100 at 144.682 kb on - strand, within HMPREF1078_RS11100 at 144.801 kb on - strand, within HMPREF1078_RS11100 at 144.877 kb on - strand, within HMPREF1078_RS11100 at 144.922 kb on - strand, within HMPREF1078_RS11100 at 144.997 kb on - strand, within HMPREF1078_RS11100 at 145.034 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.042 kb on - strand, within HMPREF1078_RS11100 at 145.042 kb on - strand, within HMPREF1078_RS11100 at 145.112 kb on - strand at 145.112 kb on - strand at 145.116 kb on - strand at 145.116 kb on - strand at 145.131 kb on - strand at 145.131 kb on - strand at 145.135 kb on - strand at 145.137 kb on - strand at 145.137 kb on - strand at 145.160 kb on - strand at 145.160 kb on - strand at 145.161 kb on + strand at 145.188 kb on + strand at 145.265 kb on - strand at 145.352 kb on + strand at 145.367 kb on - strand at 145.407 kb on + strand at 145.484 kb on - strand, within HMPREF1078_RS11105 at 145.522 kb on + strand, within HMPREF1078_RS11105 at 145.523 kb on - strand, within HMPREF1078_RS11105 at 145.558 kb on + strand, within HMPREF1078_RS11105 at 145.560 kb on + strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.616 kb on - strand, within HMPREF1078_RS11105 at 145.618 kb on - strand, within HMPREF1078_RS11105 at 145.629 kb on + strand, within HMPREF1078_RS11105 at 145.629 kb on + strand, within HMPREF1078_RS11105 at 145.638 kb on - strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.665 kb on + strand, within HMPREF1078_RS11105 at 145.784 kb on - strand, within HMPREF1078_RS11105 at 145.828 kb on - strand, within HMPREF1078_RS11105 at 145.868 kb on - strand, within HMPREF1078_RS11105 at 145.935 kb on + strand, within HMPREF1078_RS11105 at 145.936 kb on - strand, within HMPREF1078_RS11105 at 146.068 kb on - strand, within HMPREF1078_RS11105 at 146.068 kb on - strand, within HMPREF1078_RS11105 at 146.108 kb on + strand, within HMPREF1078_RS11105 at 146.110 kb on + strand, within HMPREF1078_RS11105 at 146.110 kb on + strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.112 kb on + strand, within HMPREF1078_RS11105 at 146.159 kb on + strand, within HMPREF1078_RS11105 at 146.212 kb on + strand, within HMPREF1078_RS11105 at 146.213 kb on - strand, within HMPREF1078_RS11105 at 146.263 kb on + strand at 146.323 kb on + strand at 146.323 kb on + strand at 146.323 kb on + strand at 146.324 kb on - strand at 146.333 kb on - strand at 146.361 kb on + strand at 146.361 kb on + strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.428 kb on - strand at 146.478 kb on + strand at 146.485 kb on - strand at 146.519 kb on + strand at 146.521 kb on + strand at 146.521 kb on + strand at 146.549 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.254 kb on + strand at 147.254 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.265 kb on + strand at 147.265 kb on + strand at 147.285 kb on + strand at 147.285 kb on + strand at 147.304 kb on + strand at 147.312 kb on + strand at 147.317 kb on + strand at 147.317 kb on + strand at 147.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 144,436 - -0.9 144,509 - HMPREF1078_RS11100 0.11 -0.5 144,509 - HMPREF1078_RS11100 0.11 -0.5 144,682 - HMPREF1078_RS11100 0.36 +1.5 144,682 - HMPREF1078_RS11100 0.36 +0.5 144,801 - HMPREF1078_RS11100 0.53 +1.9 144,877 - HMPREF1078_RS11100 0.64 +0.5 144,922 - HMPREF1078_RS11100 0.70 +0.5 144,997 - HMPREF1078_RS11100 0.81 -1.1 145,034 - HMPREF1078_RS11100 0.87 -1.9 145,036 - HMPREF1078_RS11100 0.87 -1.7 145,036 - HMPREF1078_RS11100 0.87 -0.5 145,036 - HMPREF1078_RS11100 0.87 -1.5 145,036 - HMPREF1078_RS11100 0.87 -0.9 145,036 - HMPREF1078_RS11100 0.87 -0.5 145,036 - HMPREF1078_RS11100 0.87 -0.1 145,036 - HMPREF1078_RS11100 0.87 -0.5 145,040 - HMPREF1078_RS11100 0.87 -1.4 145,040 - HMPREF1078_RS11100 0.87 +1.1 145,040 - HMPREF1078_RS11100 0.87 +1.5 145,042 - HMPREF1078_RS11100 0.88 -0.8 145,042 - HMPREF1078_RS11100 0.88 -1.5 145,112 - +0.5 145,112 - -1.9 145,116 - -0.1 145,116 - +0.9 145,131 - -0.1 145,131 - +1.7 145,135 - -0.8 145,137 - +1.0 145,137 - -1.9 145,160 - -0.5 145,160 - -1.1 145,161 + +0.5 145,188 + +0.1 145,265 - -0.5 145,352 + -5.0 145,367 - +1.5 145,407 + +0.5 145,484 - HMPREF1078_RS11105 0.14 -2.4 145,522 + HMPREF1078_RS11105 0.17 -2.4 145,523 - HMPREF1078_RS11105 0.18 -1.7 145,558 + HMPREF1078_RS11105 0.21 -1.7 145,560 + HMPREF1078_RS11105 0.21 -1.5 145,561 - HMPREF1078_RS11105 0.21 +1.5 145,561 - HMPREF1078_RS11105 0.21 -0.1 145,561 - HMPREF1078_RS11105 0.21 -2.8 145,616 - HMPREF1078_RS11105 0.27 -0.9 145,618 - HMPREF1078_RS11105 0.27 -1.5 145,629 + HMPREF1078_RS11105 0.28 -0.9 145,629 + HMPREF1078_RS11105 0.28 -1.9 145,638 - HMPREF1078_RS11105 0.29 -3.0 145,641 + HMPREF1078_RS11105 0.29 -2.4 145,641 + HMPREF1078_RS11105 0.29 -0.1 145,641 + HMPREF1078_RS11105 0.29 +0.5 145,641 + HMPREF1078_RS11105 0.29 -0.9 145,641 + HMPREF1078_RS11105 0.29 -0.5 145,641 + HMPREF1078_RS11105 0.29 -1.9 145,642 - HMPREF1078_RS11105 0.30 -2.0 145,642 - HMPREF1078_RS11105 0.30 -2.1 145,642 - HMPREF1078_RS11105 0.30 +1.5 145,665 + HMPREF1078_RS11105 0.32 -0.9 145,784 - HMPREF1078_RS11105 0.44 -1.7 145,828 - HMPREF1078_RS11105 0.48 -0.9 145,868 - HMPREF1078_RS11105 0.52 -0.1 145,935 + HMPREF1078_RS11105 0.59 -2.4 145,936 - HMPREF1078_RS11105 0.59 -1.7 146,068 - HMPREF1078_RS11105 0.72 -2.6 146,068 - HMPREF1078_RS11105 0.72 -2.5 146,108 + HMPREF1078_RS11105 0.76 -3.1 146,110 + HMPREF1078_RS11105 0.77 -0.5 146,110 + HMPREF1078_RS11105 0.77 -0.1 146,111 - HMPREF1078_RS11105 0.77 -0.5 146,111 - HMPREF1078_RS11105 0.77 -1.4 146,111 - HMPREF1078_RS11105 0.77 -0.5 146,111 - HMPREF1078_RS11105 0.77 -2.9 146,111 - HMPREF1078_RS11105 0.77 -0.9 146,112 + HMPREF1078_RS11105 0.77 -2.4 146,159 + HMPREF1078_RS11105 0.82 -0.9 146,212 + HMPREF1078_RS11105 0.87 +1.5 146,213 - HMPREF1078_RS11105 0.87 -1.9 146,263 + -2.1 146,323 + -3.1 146,323 + -0.1 146,323 + -3.4 146,324 - -1.1 146,333 - +0.5 146,361 + -1.9 146,361 + -2.8 146,386 + -0.5 146,386 + -1.4 146,428 - +0.0 146,478 + +1.1 146,485 - -1.8 146,519 + -3.1 146,521 + -0.1 146,521 + -2.7 146,549 + -3.9 147,251 + -0.3 147,251 + -1.7 147,251 + -0.2 147,254 + -0.2 147,254 + +0.5 147,261 + -0.4 147,261 + +1.0 147,261 + -0.1 147,261 + -0.9 147,261 + +0.3 147,261 + -0.0 147,261 + -1.1 147,265 + -0.5 147,265 + -1.5 147,285 + -1.5 147,285 + -0.8 147,304 + +0.9 147,312 + -0.1 147,317 + +0.5 147,317 + -2.9 147,317 + -0.7
Or see this region's nucleotide sequence