Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09960 and HMPREF1078_RS09965 are separated by 85 nucleotides HMPREF1078_RS09965 and HMPREF1078_RS09970 are separated by 114 nucleotides
HMPREF1078_RS09960: HMPREF1078_RS09960 - S9 family peptidase, at 607,129 to 609,255
_RS09960
HMPREF1078_RS09965: HMPREF1078_RS09965 - SPOR domain-containing protein, at 609,341 to 609,829
_RS09965
HMPREF1078_RS09970: HMPREF1078_RS09970 - translation elongation factor 4, at 609,944 to 611,731
_RS09970
Position (kb) 609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 608.363 kb on + strand, within HMPREF1078_RS09960 at 608.363 kb on + strand, within HMPREF1078_RS09960 at 608.373 kb on + strand, within HMPREF1078_RS09960 at 608.385 kb on + strand, within HMPREF1078_RS09960 at 608.386 kb on - strand, within HMPREF1078_RS09960 at 608.404 kb on - strand, within HMPREF1078_RS09960 at 608.414 kb on + strand, within HMPREF1078_RS09960 at 608.415 kb on - strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.466 kb on + strand, within HMPREF1078_RS09960 at 608.478 kb on - strand, within HMPREF1078_RS09960 at 608.496 kb on + strand, within HMPREF1078_RS09960 at 608.496 kb on + strand, within HMPREF1078_RS09960 at 608.497 kb on - strand, within HMPREF1078_RS09960 at 608.497 kb on - strand, within HMPREF1078_RS09960 at 608.499 kb on + strand, within HMPREF1078_RS09960 at 608.500 kb on - strand, within HMPREF1078_RS09960 at 608.566 kb on - strand, within HMPREF1078_RS09960 at 608.592 kb on + strand, within HMPREF1078_RS09960 at 608.653 kb on - strand, within HMPREF1078_RS09960 at 608.654 kb on + strand, within HMPREF1078_RS09960 at 608.655 kb on - strand, within HMPREF1078_RS09960 at 608.655 kb on - strand, within HMPREF1078_RS09960 at 608.674 kb on - strand, within HMPREF1078_RS09960 at 608.674 kb on - strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.706 kb on + strand, within HMPREF1078_RS09960 at 608.731 kb on + strand, within HMPREF1078_RS09960 at 608.732 kb on - strand, within HMPREF1078_RS09960 at 608.742 kb on + strand, within HMPREF1078_RS09960 at 608.742 kb on + strand, within HMPREF1078_RS09960 at 608.946 kb on + strand, within HMPREF1078_RS09960 at 608.971 kb on - strand, within HMPREF1078_RS09960 at 609.015 kb on - strand, within HMPREF1078_RS09960 at 609.019 kb on + strand, within HMPREF1078_RS09960 at 609.020 kb on - strand, within HMPREF1078_RS09960 at 609.025 kb on - strand, within HMPREF1078_RS09960 at 609.025 kb on - strand, within HMPREF1078_RS09960 at 609.026 kb on + strand, within HMPREF1078_RS09960 at 609.026 kb on + strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.070 kb on - strand at 609.121 kb on - strand at 609.199 kb on - strand at 609.263 kb on - strand at 609.265 kb on - strand at 609.265 kb on - strand at 609.270 kb on - strand at 609.270 kb on - strand at 609.299 kb on - strand at 609.346 kb on + strand at 609.346 kb on + strand at 609.347 kb on - strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.390 kb on + strand, within HMPREF1078_RS09965 at 609.391 kb on - strand, within HMPREF1078_RS09965 at 609.391 kb on - strand, within HMPREF1078_RS09965 at 609.401 kb on - strand, within HMPREF1078_RS09965 at 609.407 kb on - strand, within HMPREF1078_RS09965 at 609.419 kb on + strand, within HMPREF1078_RS09965 at 609.419 kb on + strand, within HMPREF1078_RS09965 at 609.420 kb on - strand, within HMPREF1078_RS09965 at 609.420 kb on - strand, within HMPREF1078_RS09965 at 609.422 kb on - strand, within HMPREF1078_RS09965 at 609.493 kb on - strand, within HMPREF1078_RS09965 at 609.504 kb on + strand, within HMPREF1078_RS09965 at 609.559 kb on + strand, within HMPREF1078_RS09965 at 609.559 kb on + strand, within HMPREF1078_RS09965 at 609.560 kb on - strand, within HMPREF1078_RS09965 at 609.599 kb on + strand, within HMPREF1078_RS09965 at 609.599 kb on + strand, within HMPREF1078_RS09965 at 609.642 kb on - strand, within HMPREF1078_RS09965 at 609.674 kb on + strand, within HMPREF1078_RS09965 at 609.675 kb on - strand, within HMPREF1078_RS09965 at 609.675 kb on - strand, within HMPREF1078_RS09965 at 609.676 kb on + strand, within HMPREF1078_RS09965 at 609.676 kb on + strand, within HMPREF1078_RS09965 at 609.677 kb on - strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.783 kb on - strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.825 kb on - strand at 609.825 kb on - strand at 609.828 kb on - strand at 609.846 kb on - strand at 609.849 kb on - strand at 609.926 kb on - strand at 609.945 kb on + strand at 610.045 kb on + strand at 610.045 kb on + strand at 610.046 kb on - strand at 610.046 kb on - strand at 610.046 kb on - strand at 610.052 kb on - strand at 610.060 kb on + strand at 610.060 kb on + strand at 610.060 kb on + strand at 610.061 kb on - strand at 610.061 kb on - strand at 610.071 kb on + strand at 610.086 kb on - strand at 610.093 kb on + strand at 610.094 kb on - strand at 610.201 kb on + strand, within HMPREF1078_RS09970 at 610.201 kb on + strand, within HMPREF1078_RS09970 at 610.202 kb on - strand, within HMPREF1078_RS09970 at 610.202 kb on - strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.232 kb on - strand, within HMPREF1078_RS09970 at 610.232 kb on - strand, within HMPREF1078_RS09970 at 610.318 kb on + strand, within HMPREF1078_RS09970 at 610.319 kb on - strand, within HMPREF1078_RS09970 at 610.323 kb on + strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.351 kb on + strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.401 kb on + strand, within HMPREF1078_RS09970 at 610.404 kb on + strand, within HMPREF1078_RS09970 at 610.405 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.492 kb on + strand, within HMPREF1078_RS09970 at 610.502 kb on - strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.505 kb on - strand, within HMPREF1078_RS09970 at 610.508 kb on - strand, within HMPREF1078_RS09970 at 610.508 kb on - strand, within HMPREF1078_RS09970 at 610.511 kb on - strand, within HMPREF1078_RS09970 at 610.511 kb on - strand, within HMPREF1078_RS09970 at 610.528 kb on - strand, within HMPREF1078_RS09970 at 610.528 kb on - strand, within HMPREF1078_RS09970 at 610.540 kb on + strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.555 kb on + strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.580 kb on - strand, within HMPREF1078_RS09970 at 610.580 kb on - strand, within HMPREF1078_RS09970 at 610.592 kb on - strand, within HMPREF1078_RS09970 at 610.592 kb on - strand, within HMPREF1078_RS09970 at 610.612 kb on - strand, within HMPREF1078_RS09970 at 610.619 kb on - strand, within HMPREF1078_RS09970 at 610.620 kb on + strand, within HMPREF1078_RS09970 at 610.630 kb on + strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.654 kb on + strand, within HMPREF1078_RS09970 at 610.693 kb on + strand, within HMPREF1078_RS09970
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 608,363 + HMPREF1078_RS09960 0.58 +0.8 608,363 + HMPREF1078_RS09960 0.58 -1.9 608,373 + HMPREF1078_RS09960 0.58 -0.9 608,385 + HMPREF1078_RS09960 0.59 +0.5 608,386 - HMPREF1078_RS09960 0.59 +0.0 608,404 - HMPREF1078_RS09960 0.60 -2.6 608,414 + HMPREF1078_RS09960 0.60 +1.2 608,415 - HMPREF1078_RS09960 0.60 +2.5 608,420 + HMPREF1078_RS09960 0.61 -0.1 608,420 + HMPREF1078_RS09960 0.61 +1.1 608,420 + HMPREF1078_RS09960 0.61 -1.5 608,420 + HMPREF1078_RS09960 0.61 +0.1 608,420 + HMPREF1078_RS09960 0.61 -2.3 608,421 - HMPREF1078_RS09960 0.61 -0.9 608,421 - HMPREF1078_RS09960 0.61 -2.5 608,421 - HMPREF1078_RS09960 0.61 -1.4 608,466 + HMPREF1078_RS09960 0.63 -3.6 608,478 - HMPREF1078_RS09960 0.63 +0.5 608,496 + HMPREF1078_RS09960 0.64 -1.0 608,496 + HMPREF1078_RS09960 0.64 +2.5 608,497 - HMPREF1078_RS09960 0.64 -0.0 608,497 - HMPREF1078_RS09960 0.64 -0.1 608,499 + HMPREF1078_RS09960 0.64 +1.5 608,500 - HMPREF1078_RS09960 0.64 +0.9 608,566 - HMPREF1078_RS09960 0.68 +0.5 608,592 + HMPREF1078_RS09960 0.69 +1.0 608,653 - HMPREF1078_RS09960 0.72 -0.1 608,654 + HMPREF1078_RS09960 0.72 +2.6 608,655 - HMPREF1078_RS09960 0.72 -1.3 608,655 - HMPREF1078_RS09960 0.72 -1.5 608,674 - HMPREF1078_RS09960 0.73 +0.2 608,674 - HMPREF1078_RS09960 0.73 +1.8 608,676 + HMPREF1078_RS09960 0.73 +1.5 608,676 + HMPREF1078_RS09960 0.73 -0.7 608,676 + HMPREF1078_RS09960 0.73 -1.0 608,706 + HMPREF1078_RS09960 0.74 +0.9 608,731 + HMPREF1078_RS09960 0.75 +0.8 608,732 - HMPREF1078_RS09960 0.75 -0.9 608,742 + HMPREF1078_RS09960 0.76 -1.4 608,742 + HMPREF1078_RS09960 0.76 -3.5 608,946 + HMPREF1078_RS09960 0.85 -0.7 608,971 - HMPREF1078_RS09960 0.87 -0.9 609,015 - HMPREF1078_RS09960 0.89 +1.0 609,019 + HMPREF1078_RS09960 0.89 -3.4 609,020 - HMPREF1078_RS09960 0.89 +0.6 609,025 - HMPREF1078_RS09960 0.89 -0.5 609,025 - HMPREF1078_RS09960 0.89 -0.3 609,026 + HMPREF1078_RS09960 0.89 -0.3 609,026 + HMPREF1078_RS09960 0.89 -1.3 609,027 - HMPREF1078_RS09960 0.89 +0.3 609,027 - HMPREF1078_RS09960 0.89 -0.1 609,027 - HMPREF1078_RS09960 0.89 +0.2 609,027 - HMPREF1078_RS09960 0.89 -1.2 609,070 - +1.8 609,121 - -0.1 609,199 - -0.0 609,263 - +0.4 609,265 - +0.2 609,265 - +1.6 609,270 - -0.8 609,270 - -0.7 609,299 - -3.2 609,346 + -1.3 609,346 + -0.9 609,347 - -2.7 609,372 + +0.5 609,372 + -1.1 609,372 + +0.5 609,372 + -1.3 609,372 + -1.9 609,372 + -2.1 609,372 + -0.1 609,372 + -2.7 609,372 + -0.1 609,372 + +0.5 609,372 + -1.5 609,372 + -1.1 609,373 - -3.1 609,373 - -2.5 609,373 - -2.0 609,373 - -2.5 609,373 - -1.0 609,373 - -3.1 609,373 - -0.1 609,373 - -1.7 609,376 + -3.7 609,376 + -2.6 609,376 + -2.0 609,376 + -1.0 609,376 + -0.1 609,377 - +0.5 609,377 - -1.5 609,377 - -1.5 609,390 + HMPREF1078_RS09965 0.10 -2.9 609,391 - HMPREF1078_RS09965 0.10 -1.1 609,391 - HMPREF1078_RS09965 0.10 -2.1 609,401 - HMPREF1078_RS09965 0.12 -0.1 609,407 - HMPREF1078_RS09965 0.13 -0.5 609,419 + HMPREF1078_RS09965 0.16 -0.5 609,419 + HMPREF1078_RS09965 0.16 -2.9 609,420 - HMPREF1078_RS09965 0.16 -1.5 609,420 - HMPREF1078_RS09965 0.16 -1.1 609,422 - HMPREF1078_RS09965 0.17 +0.3 609,493 - HMPREF1078_RS09965 0.31 -3.0 609,504 + HMPREF1078_RS09965 0.33 -0.2 609,559 + HMPREF1078_RS09965 0.45 -1.9 609,559 + HMPREF1078_RS09965 0.45 -3.2 609,560 - HMPREF1078_RS09965 0.45 -0.1 609,599 + HMPREF1078_RS09965 0.53 -0.1 609,599 + HMPREF1078_RS09965 0.53 -2.2 609,642 - HMPREF1078_RS09965 0.62 -0.9 609,674 + HMPREF1078_RS09965 0.68 -3.4 609,675 - HMPREF1078_RS09965 0.68 +0.1 609,675 - HMPREF1078_RS09965 0.68 -1.2 609,676 + HMPREF1078_RS09965 0.69 +0.7 609,676 + HMPREF1078_RS09965 0.69 -1.9 609,677 - HMPREF1078_RS09965 0.69 -0.5 609,706 + HMPREF1078_RS09965 0.75 -2.2 609,706 + HMPREF1078_RS09965 0.75 -1.2 609,706 + HMPREF1078_RS09965 0.75 -1.1 609,706 + HMPREF1078_RS09965 0.75 -0.9 609,707 - HMPREF1078_RS09965 0.75 -2.4 609,707 - HMPREF1078_RS09965 0.75 -2.6 609,707 - HMPREF1078_RS09965 0.75 -2.0 609,707 - HMPREF1078_RS09965 0.75 -1.3 609,783 - -0.1 609,824 + -1.9 609,824 + +0.2 609,824 + -1.0 609,824 + -0.1 609,825 - +0.3 609,825 - -0.9 609,828 - -1.0 609,846 - +0.2 609,849 - -1.7 609,926 - -0.5 609,945 + -1.7 610,045 + +0.9 610,045 + -3.1 610,046 - -3.7 610,046 - -3.2 610,046 - -1.3 610,052 - -1.3 610,060 + -2.3 610,060 + -1.9 610,060 + -0.5 610,061 - -2.0 610,061 - -0.5 610,071 + -1.8 610,086 - -0.5 610,093 + -1.5 610,094 - -1.3 610,201 + HMPREF1078_RS09970 0.14 -1.3 610,201 + HMPREF1078_RS09970 0.14 +1.7 610,202 - HMPREF1078_RS09970 0.14 -1.4 610,202 - HMPREF1078_RS09970 0.14 -1.3 610,231 + HMPREF1078_RS09970 0.16 -1.5 610,231 + HMPREF1078_RS09970 0.16 +2.3 610,231 + HMPREF1078_RS09970 0.16 -0.1 610,231 + HMPREF1078_RS09970 0.16 -0.9 610,231 + HMPREF1078_RS09970 0.16 +0.5 610,232 - HMPREF1078_RS09970 0.16 +1.5 610,232 - HMPREF1078_RS09970 0.16 -2.0 610,318 + HMPREF1078_RS09970 0.21 -1.0 610,319 - HMPREF1078_RS09970 0.21 -1.7 610,323 + HMPREF1078_RS09970 0.21 -1.3 610,324 - HMPREF1078_RS09970 0.21 -2.6 610,324 - HMPREF1078_RS09970 0.21 -0.2 610,324 - HMPREF1078_RS09970 0.21 -1.1 610,324 - HMPREF1078_RS09970 0.21 -0.9 610,351 + HMPREF1078_RS09970 0.23 +0.5 610,400 - HMPREF1078_RS09970 0.26 -1.3 610,400 - HMPREF1078_RS09970 0.26 -0.9 610,400 - HMPREF1078_RS09970 0.26 -1.6 610,401 + HMPREF1078_RS09970 0.26 -1.9 610,404 + HMPREF1078_RS09970 0.26 -2.3 610,405 - HMPREF1078_RS09970 0.26 -1.5 610,435 - HMPREF1078_RS09970 0.27 -3.6 610,435 - HMPREF1078_RS09970 0.27 -1.4 610,435 - HMPREF1078_RS09970 0.27 -0.5 610,492 + HMPREF1078_RS09970 0.31 +1.5 610,502 - HMPREF1078_RS09970 0.31 -3.3 610,504 + HMPREF1078_RS09970 0.31 -1.7 610,504 + HMPREF1078_RS09970 0.31 -1.0 610,504 + HMPREF1078_RS09970 0.31 -1.3 610,505 - HMPREF1078_RS09970 0.31 -4.5 610,508 - HMPREF1078_RS09970 0.32 -0.2 610,508 - HMPREF1078_RS09970 0.32 +1.5 610,511 - HMPREF1078_RS09970 0.32 -1.7 610,511 - HMPREF1078_RS09970 0.32 -2.1 610,528 - HMPREF1078_RS09970 0.33 -0.2 610,528 - HMPREF1078_RS09970 0.33 -1.1 610,540 + HMPREF1078_RS09970 0.33 -2.4 610,541 - HMPREF1078_RS09970 0.33 -1.7 610,541 - HMPREF1078_RS09970 0.33 -1.9 610,541 - HMPREF1078_RS09970 0.33 -0.6 610,555 + HMPREF1078_RS09970 0.34 -3.2 610,556 - HMPREF1078_RS09970 0.34 -0.3 610,556 - HMPREF1078_RS09970 0.34 +0.5 610,556 - HMPREF1078_RS09970 0.34 -1.4 610,580 - HMPREF1078_RS09970 0.36 +0.1 610,580 - HMPREF1078_RS09970 0.36 -2.6 610,592 - HMPREF1078_RS09970 0.36 -2.9 610,592 - HMPREF1078_RS09970 0.36 -0.1 610,612 - HMPREF1078_RS09970 0.37 -1.6 610,619 - HMPREF1078_RS09970 0.38 -1.5 610,620 + HMPREF1078_RS09970 0.38 -2.1 610,630 + HMPREF1078_RS09970 0.38 +0.9 610,631 - HMPREF1078_RS09970 0.38 -1.1 610,631 - HMPREF1078_RS09970 0.38 -1.1 610,631 - HMPREF1078_RS09970 0.38 -3.7 610,654 + HMPREF1078_RS09970 0.40 -2.2 610,693 + HMPREF1078_RS09970 0.42 -0.6
Or see this region's nucleotide sequence