Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07880 and HMPREF1078_RS07885 are separated by 125 nucleotides HMPREF1078_RS07885 and HMPREF1078_RS07890 are separated by 92 nucleotides
HMPREF1078_RS07880: HMPREF1078_RS07880 - MATE family efflux transporter, at 131,822 to 133,144
_RS07880
HMPREF1078_RS07885: HMPREF1078_RS07885 - hypothetical protein, at 133,270 to 134,268
_RS07885
HMPREF1078_RS07890: HMPREF1078_RS07890 - ABC-F family ATP-binding cassette domain-containing protein, at 134,361 to 135,977
_RS07890
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 132.443 kb on + strand, within HMPREF1078_RS07880 at 132.443 kb on + strand, within HMPREF1078_RS07880 at 132.493 kb on - strand, within HMPREF1078_RS07880 at 132.499 kb on + strand, within HMPREF1078_RS07880 at 132.500 kb on - strand, within HMPREF1078_RS07880 at 132.502 kb on - strand, within HMPREF1078_RS07880 at 132.502 kb on - strand, within HMPREF1078_RS07880 at 132.520 kb on + strand, within HMPREF1078_RS07880 at 132.520 kb on + strand, within HMPREF1078_RS07880 at 132.522 kb on + strand, within HMPREF1078_RS07880 at 132.523 kb on - strand, within HMPREF1078_RS07880 at 132.628 kb on - strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.639 kb on - strand, within HMPREF1078_RS07880 at 132.647 kb on + strand, within HMPREF1078_RS07880 at 132.648 kb on - strand, within HMPREF1078_RS07880 at 132.691 kb on + strand, within HMPREF1078_RS07880 at 132.703 kb on - strand, within HMPREF1078_RS07880 at 132.747 kb on + strand, within HMPREF1078_RS07880 at 132.748 kb on - strand, within HMPREF1078_RS07880 at 132.765 kb on + strand, within HMPREF1078_RS07880 at 132.765 kb on + strand, within HMPREF1078_RS07880 at 132.783 kb on + strand, within HMPREF1078_RS07880 at 132.784 kb on - strand, within HMPREF1078_RS07880 at 132.913 kb on - strand, within HMPREF1078_RS07880 at 132.913 kb on - strand, within HMPREF1078_RS07880 at 132.938 kb on + strand, within HMPREF1078_RS07880 at 132.938 kb on + strand, within HMPREF1078_RS07880 at 132.956 kb on + strand, within HMPREF1078_RS07880 at 132.958 kb on + strand, within HMPREF1078_RS07880 at 132.981 kb on + strand, within HMPREF1078_RS07880 at 132.981 kb on + strand, within HMPREF1078_RS07880 at 132.982 kb on - strand, within HMPREF1078_RS07880 at 132.982 kb on - strand, within HMPREF1078_RS07880 at 132.993 kb on + strand, within HMPREF1078_RS07880 at 132.993 kb on + strand, within HMPREF1078_RS07880 at 132.996 kb on + strand, within HMPREF1078_RS07880 at 133.088 kb on + strand at 133.089 kb on - strand at 133.113 kb on - strand at 133.113 kb on - strand at 133.136 kb on - strand at 133.173 kb on - strand at 133.178 kb on + strand at 133.235 kb on + strand at 133.248 kb on - strand at 133.283 kb on + strand at 133.292 kb on + strand at 133.293 kb on - strand at 133.323 kb on + strand at 133.475 kb on + strand, within HMPREF1078_RS07885 at 133.488 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.543 kb on + strand, within HMPREF1078_RS07885 at 133.543 kb on + strand, within HMPREF1078_RS07885 at 133.546 kb on + strand, within HMPREF1078_RS07885 at 133.547 kb on - strand, within HMPREF1078_RS07885 at 133.547 kb on - strand, within HMPREF1078_RS07885 at 133.572 kb on - strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.594 kb on + strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.685 kb on - strand, within HMPREF1078_RS07885 at 133.686 kb on + strand, within HMPREF1078_RS07885 at 133.687 kb on - strand, within HMPREF1078_RS07885 at 133.715 kb on + strand, within HMPREF1078_RS07885 at 133.749 kb on - strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.753 kb on - strand, within HMPREF1078_RS07885 at 133.756 kb on + strand, within HMPREF1078_RS07885 at 133.757 kb on - strand, within HMPREF1078_RS07885 at 133.760 kb on + strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.830 kb on + strand, within HMPREF1078_RS07885 at 133.831 kb on - strand, within HMPREF1078_RS07885 at 133.831 kb on - strand, within HMPREF1078_RS07885 at 133.844 kb on - strand, within HMPREF1078_RS07885 at 133.915 kb on + strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.929 kb on - strand, within HMPREF1078_RS07885 at 133.933 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 134.000 kb on - strand, within HMPREF1078_RS07885 at 134.040 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.062 kb on + strand, within HMPREF1078_RS07885 at 134.065 kb on - strand, within HMPREF1078_RS07885 at 134.088 kb on + strand, within HMPREF1078_RS07885 at 134.089 kb on - strand, within HMPREF1078_RS07885 at 134.089 kb on - strand, within HMPREF1078_RS07885 at 134.092 kb on + strand, within HMPREF1078_RS07885 at 134.092 kb on + strand, within HMPREF1078_RS07885 at 134.114 kb on + strand, within HMPREF1078_RS07885 at 134.114 kb on + strand, within HMPREF1078_RS07885 at 134.179 kb on + strand at 134.179 kb on + strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.266 kb on + strand at 134.283 kb on - strand at 134.284 kb on + strand at 134.285 kb on - strand at 134.285 kb on - strand at 134.302 kb on + strand at 134.303 kb on - strand at 134.328 kb on + strand at 134.328 kb on + strand at 134.334 kb on - strand at 134.334 kb on - strand at 134.334 kb on - strand at 134.348 kb on - strand at 134.364 kb on + strand at 134.364 kb on + strand at 134.364 kb on + strand at 134.365 kb on - strand at 134.365 kb on - strand at 134.365 kb on - strand at 134.369 kb on + strand at 134.370 kb on - strand at 134.370 kb on - strand at 134.373 kb on - strand at 134.396 kb on + strand at 134.432 kb on - strand at 134.432 kb on - strand at 134.465 kb on + strand at 134.465 kb on + strand at 134.466 kb on - strand at 134.505 kb on + strand at 134.506 kb on - strand at 134.506 kb on - strand at 134.537 kb on + strand, within HMPREF1078_RS07890 at 134.542 kb on - strand, within HMPREF1078_RS07890 at 134.639 kb on - strand, within HMPREF1078_RS07890 at 134.762 kb on + strand, within HMPREF1078_RS07890 at 134.763 kb on - strand, within HMPREF1078_RS07890 at 134.764 kb on + strand, within HMPREF1078_RS07890 at 134.789 kb on + strand, within HMPREF1078_RS07890 at 134.876 kb on + strand, within HMPREF1078_RS07890 at 134.877 kb on - strand, within HMPREF1078_RS07890 at 134.919 kb on + strand, within HMPREF1078_RS07890 at 135.104 kb on + strand, within HMPREF1078_RS07890 at 135.119 kb on + strand, within HMPREF1078_RS07890 at 135.120 kb on - strand, within HMPREF1078_RS07890 at 135.173 kb on + strand, within HMPREF1078_RS07890 at 135.174 kb on - strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 132,443 + HMPREF1078_RS07880 0.47 +0.2 132,443 + HMPREF1078_RS07880 0.47 -1.1 132,493 - HMPREF1078_RS07880 0.51 -1.1 132,499 + HMPREF1078_RS07880 0.51 +3.9 132,500 - HMPREF1078_RS07880 0.51 +1.7 132,502 - HMPREF1078_RS07880 0.51 -0.1 132,502 - HMPREF1078_RS07880 0.51 +1.3 132,520 + HMPREF1078_RS07880 0.53 -2.3 132,520 + HMPREF1078_RS07880 0.53 -2.9 132,522 + HMPREF1078_RS07880 0.53 +1.5 132,523 - HMPREF1078_RS07880 0.53 +0.2 132,628 - HMPREF1078_RS07880 0.61 -0.1 132,638 + HMPREF1078_RS07880 0.62 +1.1 132,638 + HMPREF1078_RS07880 0.62 +0.5 132,638 + HMPREF1078_RS07880 0.62 -0.8 132,639 - HMPREF1078_RS07880 0.62 -0.8 132,647 + HMPREF1078_RS07880 0.62 +2.5 132,648 - HMPREF1078_RS07880 0.62 +1.1 132,691 + HMPREF1078_RS07880 0.66 +1.5 132,703 - HMPREF1078_RS07880 0.67 -0.5 132,747 + HMPREF1078_RS07880 0.70 -0.1 132,748 - HMPREF1078_RS07880 0.70 +1.5 132,765 + HMPREF1078_RS07880 0.71 -0.1 132,765 + HMPREF1078_RS07880 0.71 -2.6 132,783 + HMPREF1078_RS07880 0.73 +1.5 132,784 - HMPREF1078_RS07880 0.73 -3.1 132,913 - HMPREF1078_RS07880 0.82 -1.5 132,913 - HMPREF1078_RS07880 0.82 -3.0 132,938 + HMPREF1078_RS07880 0.84 +0.5 132,938 + HMPREF1078_RS07880 0.84 +0.5 132,956 + HMPREF1078_RS07880 0.86 +0.1 132,958 + HMPREF1078_RS07880 0.86 -0.1 132,981 + HMPREF1078_RS07880 0.88 -1.4 132,981 + HMPREF1078_RS07880 0.88 -1.3 132,982 - HMPREF1078_RS07880 0.88 +1.3 132,982 - HMPREF1078_RS07880 0.88 +2.8 132,993 + HMPREF1078_RS07880 0.89 +1.8 132,993 + HMPREF1078_RS07880 0.89 +0.3 132,996 + HMPREF1078_RS07880 0.89 +0.5 133,088 + -2.3 133,089 - +1.9 133,113 - -1.6 133,113 - +0.9 133,136 - +1.5 133,173 - +1.2 133,178 + -1.3 133,235 + -1.8 133,248 - -0.5 133,283 + -1.1 133,292 + -2.1 133,293 - +1.5 133,323 + -0.8 133,475 + HMPREF1078_RS07885 0.21 -1.1 133,488 + HMPREF1078_RS07885 0.22 +0.5 133,493 + HMPREF1078_RS07885 0.22 -0.5 133,493 + HMPREF1078_RS07885 0.22 +2.1 133,493 + HMPREF1078_RS07885 0.22 -0.1 133,543 + HMPREF1078_RS07885 0.27 -0.6 133,543 + HMPREF1078_RS07885 0.27 -1.8 133,546 + HMPREF1078_RS07885 0.28 -1.5 133,547 - HMPREF1078_RS07885 0.28 -0.1 133,547 - HMPREF1078_RS07885 0.28 -0.1 133,572 - HMPREF1078_RS07885 0.30 -1.3 133,573 + HMPREF1078_RS07885 0.30 -0.5 133,573 + HMPREF1078_RS07885 0.30 -1.3 133,573 + HMPREF1078_RS07885 0.30 -1.1 133,574 - HMPREF1078_RS07885 0.30 +1.5 133,574 - HMPREF1078_RS07885 0.30 +0.2 133,574 - HMPREF1078_RS07885 0.30 -0.1 133,575 + HMPREF1078_RS07885 0.31 -0.8 133,575 + HMPREF1078_RS07885 0.31 -0.1 133,575 + HMPREF1078_RS07885 0.31 -2.8 133,594 + HMPREF1078_RS07885 0.32 -2.8 133,595 - HMPREF1078_RS07885 0.33 +0.5 133,595 - HMPREF1078_RS07885 0.33 -1.1 133,595 - HMPREF1078_RS07885 0.33 -1.3 133,684 + HMPREF1078_RS07885 0.41 +1.5 133,684 + HMPREF1078_RS07885 0.41 -1.6 133,684 + HMPREF1078_RS07885 0.41 -1.1 133,684 + HMPREF1078_RS07885 0.41 -0.1 133,684 + HMPREF1078_RS07885 0.41 -2.2 133,684 + HMPREF1078_RS07885 0.41 -1.8 133,684 + HMPREF1078_RS07885 0.41 -2.9 133,684 + HMPREF1078_RS07885 0.41 -1.1 133,684 + HMPREF1078_RS07885 0.41 -1.1 133,684 + HMPREF1078_RS07885 0.41 +0.2 133,685 - HMPREF1078_RS07885 0.42 +0.5 133,686 + HMPREF1078_RS07885 0.42 -1.5 133,687 - HMPREF1078_RS07885 0.42 +0.5 133,715 + HMPREF1078_RS07885 0.45 -1.1 133,749 - HMPREF1078_RS07885 0.48 -1.3 133,752 + HMPREF1078_RS07885 0.48 -1.5 133,752 + HMPREF1078_RS07885 0.48 -0.1 133,752 + HMPREF1078_RS07885 0.48 -1.8 133,753 - HMPREF1078_RS07885 0.48 -0.5 133,756 + HMPREF1078_RS07885 0.49 -2.1 133,757 - HMPREF1078_RS07885 0.49 -0.1 133,760 + HMPREF1078_RS07885 0.49 -2.3 133,781 - HMPREF1078_RS07885 0.51 -2.7 133,781 - HMPREF1078_RS07885 0.51 -0.8 133,781 - HMPREF1078_RS07885 0.51 -2.1 133,830 + HMPREF1078_RS07885 0.56 -1.9 133,831 - HMPREF1078_RS07885 0.56 -0.3 133,831 - HMPREF1078_RS07885 0.56 -1.6 133,844 - HMPREF1078_RS07885 0.57 +2.5 133,915 + HMPREF1078_RS07885 0.65 -0.5 133,916 - HMPREF1078_RS07885 0.65 -2.9 133,916 - HMPREF1078_RS07885 0.65 -1.9 133,916 - HMPREF1078_RS07885 0.65 -1.9 133,928 + HMPREF1078_RS07885 0.66 -1.9 133,928 + HMPREF1078_RS07885 0.66 -1.1 133,928 + HMPREF1078_RS07885 0.66 -0.5 133,929 - HMPREF1078_RS07885 0.66 -1.3 133,933 + HMPREF1078_RS07885 0.66 -1.1 133,973 + HMPREF1078_RS07885 0.70 -0.8 133,973 + HMPREF1078_RS07885 0.70 -1.3 133,973 + HMPREF1078_RS07885 0.70 -0.5 133,973 + HMPREF1078_RS07885 0.70 -2.2 134,000 - HMPREF1078_RS07885 0.73 +0.2 134,040 + HMPREF1078_RS07885 0.77 -0.2 134,045 + HMPREF1078_RS07885 0.78 -1.8 134,045 + HMPREF1078_RS07885 0.78 -2.1 134,045 + HMPREF1078_RS07885 0.78 -0.6 134,062 + HMPREF1078_RS07885 0.79 -0.5 134,065 - HMPREF1078_RS07885 0.80 +0.3 134,088 + HMPREF1078_RS07885 0.82 -2.1 134,089 - HMPREF1078_RS07885 0.82 -1.5 134,089 - HMPREF1078_RS07885 0.82 -0.1 134,092 + HMPREF1078_RS07885 0.82 -2.6 134,092 + HMPREF1078_RS07885 0.82 -2.2 134,114 + HMPREF1078_RS07885 0.84 -0.9 134,114 + HMPREF1078_RS07885 0.84 -2.4 134,179 + -0.9 134,179 + -2.3 134,180 - -1.9 134,180 - -1.1 134,180 - -1.5 134,180 - -0.1 134,181 + -1.9 134,181 + -2.3 134,181 + -0.5 134,266 + -0.8 134,283 - -0.1 134,284 + +1.8 134,285 - +1.9 134,285 - -1.1 134,302 + -2.2 134,303 - +1.1 134,328 + -1.6 134,328 + -1.6 134,334 - -0.5 134,334 - -1.6 134,334 - -1.3 134,348 - -1.9 134,364 + -0.1 134,364 + +1.1 134,364 + -0.8 134,365 - +0.6 134,365 - -0.6 134,365 - -0.4 134,369 + -3.8 134,370 - -1.5 134,370 - +1.1 134,373 - -0.6 134,396 + -0.1 134,432 - +0.7 134,432 - +0.0 134,465 + -2.7 134,465 + -0.4 134,466 - -0.6 134,505 + +1.0 134,506 - +0.6 134,506 - +0.6 134,537 + HMPREF1078_RS07890 0.11 +1.5 134,542 - HMPREF1078_RS07890 0.11 +0.5 134,639 - HMPREF1078_RS07890 0.17 +0.3 134,762 + HMPREF1078_RS07890 0.25 -0.1 134,763 - HMPREF1078_RS07890 0.25 +0.5 134,764 + HMPREF1078_RS07890 0.25 +0.0 134,789 + HMPREF1078_RS07890 0.26 -1.1 134,876 + HMPREF1078_RS07890 0.32 -1.8 134,877 - HMPREF1078_RS07890 0.32 -0.6 134,919 + HMPREF1078_RS07890 0.35 -0.3 135,104 + HMPREF1078_RS07890 0.46 -0.5 135,119 + HMPREF1078_RS07890 0.47 +0.5 135,120 - HMPREF1078_RS07890 0.47 +2.0 135,173 + HMPREF1078_RS07890 0.50 -0.8 135,174 - HMPREF1078_RS07890 0.50 +1.5 135,240 + HMPREF1078_RS07890 0.54 +0.4 135,240 + HMPREF1078_RS07890 0.54 -0.8 135,240 + HMPREF1078_RS07890 0.54 -2.3
Or see this region's nucleotide sequence