Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07595 and HMPREF1078_RS07600 are separated by 121 nucleotides HMPREF1078_RS07600 and HMPREF1078_RS07605 are separated by 36 nucleotides HMPREF1078_RS07605 and HMPREF1078_RS07610 are separated by 57 nucleotides
HMPREF1078_RS07595: HMPREF1078_RS07595 - pyridoxal phosphate-dependent aminotransferase, at 54,726 to 56,039
_RS07595
HMPREF1078_RS07600: HMPREF1078_RS07600 - YqgE/AlgH family protein, at 56,161 to 56,757
_RS07600
HMPREF1078_RS07605: HMPREF1078_RS07605 - GNAT family N-acetyltransferase, at 56,794 to 57,327
_RS07605
HMPREF1078_RS07610: HMPREF1078_RS07610 - glycosyltransferase family 2 protein, at 57,385 to 58,542
_RS07610
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.814 kb on - strand, within HMPREF1078_RS07595 at 55.840 kb on - strand, within HMPREF1078_RS07595 at 55.893 kb on - strand, within HMPREF1078_RS07595 at 55.896 kb on + strand, within HMPREF1078_RS07595 at 55.937 kb on + strand at 55.951 kb on + strand at 55.961 kb on + strand at 55.962 kb on - strand at 55.970 kb on + strand at 55.987 kb on - strand at 56.037 kb on + strand at 56.038 kb on - strand at 56.038 kb on - strand at 56.060 kb on - strand at 56.060 kb on - strand at 56.073 kb on + strand at 56.118 kb on + strand at 56.122 kb on + strand at 56.122 kb on + strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.136 kb on + strand at 56.136 kb on + strand at 56.150 kb on + strand at 56.151 kb on - strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.171 kb on - strand at 56.172 kb on + strand at 56.180 kb on + strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.189 kb on + strand at 56.279 kb on + strand, within HMPREF1078_RS07600 at 56.280 kb on - strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.319 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.367 kb on - strand, within HMPREF1078_RS07600 at 56.384 kb on + strand, within HMPREF1078_RS07600 at 56.450 kb on + strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.460 kb on + strand, within HMPREF1078_RS07600 at 56.461 kb on - strand, within HMPREF1078_RS07600 at 56.475 kb on - strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.522 kb on - strand, within HMPREF1078_RS07600 at 56.524 kb on - strand, within HMPREF1078_RS07600 at 56.568 kb on - strand, within HMPREF1078_RS07600 at 56.609 kb on + strand, within HMPREF1078_RS07600 at 56.629 kb on + strand, within HMPREF1078_RS07600 at 56.630 kb on + strand, within HMPREF1078_RS07600 at 56.658 kb on - strand, within HMPREF1078_RS07600 at 56.713 kb on + strand at 56.714 kb on - strand at 56.755 kb on + strand at 56.770 kb on + strand at 56.781 kb on - strand at 56.850 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.874 kb on + strand, within HMPREF1078_RS07605 at 56.875 kb on - strand, within HMPREF1078_RS07605 at 56.926 kb on - strand, within HMPREF1078_RS07605 at 57.081 kb on - strand, within HMPREF1078_RS07605 at 57.096 kb on + strand, within HMPREF1078_RS07605 at 57.158 kb on - strand, within HMPREF1078_RS07605 at 57.178 kb on + strand, within HMPREF1078_RS07605 at 57.179 kb on - strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.207 kb on - strand, within HMPREF1078_RS07605 at 57.260 kb on + strand, within HMPREF1078_RS07605 at 57.356 kb on + strand at 57.397 kb on + strand at 57.398 kb on - strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.415 kb on - strand at 57.415 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.420 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.426 kb on - strand at 57.460 kb on + strand at 57.510 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.585 kb on - strand, within HMPREF1078_RS07610 at 57.785 kb on + strand, within HMPREF1078_RS07610 at 57.796 kb on + strand, within HMPREF1078_RS07610 at 57.815 kb on + strand, within HMPREF1078_RS07610 at 57.830 kb on + strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.865 kb on - strand, within HMPREF1078_RS07610 at 57.891 kb on - strand, within HMPREF1078_RS07610 at 57.893 kb on + strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.952 kb on - strand, within HMPREF1078_RS07610 at 57.981 kb on + strand, within HMPREF1078_RS07610 at 58.035 kb on + strand, within HMPREF1078_RS07610 at 58.036 kb on - strand, within HMPREF1078_RS07610 at 58.058 kb on + strand, within HMPREF1078_RS07610 at 58.299 kb on - strand, within HMPREF1078_RS07610
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 55,813 + HMPREF1078_RS07595 0.83 +0.2 55,813 + HMPREF1078_RS07595 0.83 -0.5 55,814 - HMPREF1078_RS07595 0.83 +0.4 55,840 - HMPREF1078_RS07595 0.85 +0.9 55,893 - HMPREF1078_RS07595 0.89 +0.7 55,896 + HMPREF1078_RS07595 0.89 -1.6 55,937 + +0.5 55,951 + +1.2 55,961 + +0.5 55,962 - -0.0 55,970 + +1.1 55,987 - -2.2 56,037 + -0.1 56,038 - +1.1 56,038 - -0.7 56,060 - +1.5 56,060 - +1.3 56,073 + -1.7 56,118 + -2.1 56,122 + -1.5 56,122 + +2.2 56,123 - -0.1 56,123 - -1.5 56,123 - +0.4 56,136 + -0.1 56,136 + -1.6 56,150 + -0.5 56,151 - +1.5 56,170 + -1.9 56,170 + +0.6 56,170 + -1.9 56,170 + -1.9 56,171 - -1.1 56,172 + +1.1 56,180 + -0.8 56,181 - -1.5 56,181 - +1.2 56,181 - -0.8 56,189 + -0.9 56,279 + HMPREF1078_RS07600 0.20 +1.1 56,280 - HMPREF1078_RS07600 0.20 -0.5 56,285 + HMPREF1078_RS07600 0.21 -0.1 56,285 + HMPREF1078_RS07600 0.21 -0.1 56,285 + HMPREF1078_RS07600 0.21 -0.8 56,292 + HMPREF1078_RS07600 0.22 -1.4 56,292 + HMPREF1078_RS07600 0.22 -2.2 56,292 + HMPREF1078_RS07600 0.22 -0.1 56,319 - HMPREF1078_RS07600 0.26 +2.7 56,322 - HMPREF1078_RS07600 0.27 -1.2 56,322 - HMPREF1078_RS07600 0.27 -2.7 56,367 - HMPREF1078_RS07600 0.35 +0.5 56,384 + HMPREF1078_RS07600 0.37 -0.5 56,450 + HMPREF1078_RS07600 0.48 -2.3 56,451 - HMPREF1078_RS07600 0.49 +1.2 56,451 - HMPREF1078_RS07600 0.49 -0.9 56,451 - HMPREF1078_RS07600 0.49 +1.1 56,460 + HMPREF1078_RS07600 0.50 +0.2 56,461 - HMPREF1078_RS07600 0.50 -1.3 56,475 - HMPREF1078_RS07600 0.53 +2.5 56,516 + HMPREF1078_RS07600 0.59 +2.5 56,516 + HMPREF1078_RS07600 0.59 -1.3 56,516 + HMPREF1078_RS07600 0.59 +0.7 56,516 + HMPREF1078_RS07600 0.59 -1.1 56,517 - HMPREF1078_RS07600 0.60 -0.9 56,517 - HMPREF1078_RS07600 0.60 +0.1 56,517 - HMPREF1078_RS07600 0.60 -1.5 56,517 - HMPREF1078_RS07600 0.60 +1.8 56,517 - HMPREF1078_RS07600 0.60 -1.3 56,517 - HMPREF1078_RS07600 0.60 -1.3 56,521 + HMPREF1078_RS07600 0.60 -0.1 56,521 + HMPREF1078_RS07600 0.60 +1.5 56,521 + HMPREF1078_RS07600 0.60 -2.5 56,521 + HMPREF1078_RS07600 0.60 +1.5 56,522 - HMPREF1078_RS07600 0.60 -0.8 56,524 - HMPREF1078_RS07600 0.61 -0.8 56,568 - HMPREF1078_RS07600 0.68 -0.8 56,609 + HMPREF1078_RS07600 0.75 +1.9 56,629 + HMPREF1078_RS07600 0.78 -0.2 56,630 + HMPREF1078_RS07600 0.79 +1.3 56,658 - HMPREF1078_RS07600 0.83 +0.5 56,713 + -0.6 56,714 - -1.6 56,755 + -1.3 56,770 + -1.1 56,781 - -1.9 56,850 + HMPREF1078_RS07605 0.10 -1.0 56,872 + HMPREF1078_RS07605 0.15 -2.3 56,872 + HMPREF1078_RS07605 0.15 -3.3 56,872 + HMPREF1078_RS07605 0.15 +0.5 56,873 - HMPREF1078_RS07605 0.15 -1.5 56,873 - HMPREF1078_RS07605 0.15 +0.1 56,873 - HMPREF1078_RS07605 0.15 -1.5 56,874 + HMPREF1078_RS07605 0.15 +2.5 56,875 - HMPREF1078_RS07605 0.15 -0.5 56,926 - HMPREF1078_RS07605 0.25 -0.2 57,081 - HMPREF1078_RS07605 0.54 -1.6 57,096 + HMPREF1078_RS07605 0.57 -1.3 57,158 - HMPREF1078_RS07605 0.68 -2.4 57,178 + HMPREF1078_RS07605 0.72 -2.1 57,179 - HMPREF1078_RS07605 0.72 -1.5 57,180 + HMPREF1078_RS07605 0.72 -1.3 57,180 + HMPREF1078_RS07605 0.72 -1.8 57,181 - HMPREF1078_RS07605 0.72 -0.5 57,181 - HMPREF1078_RS07605 0.72 -1.3 57,181 - HMPREF1078_RS07605 0.72 -1.6 57,207 - HMPREF1078_RS07605 0.77 -2.3 57,260 + HMPREF1078_RS07605 0.87 -1.3 57,356 + -3.4 57,397 + +0.5 57,398 - +0.3 57,414 + -1.1 57,414 + -1.3 57,414 + +0.5 57,415 - +1.5 57,415 - -0.8 57,419 - -0.1 57,419 - -1.1 57,419 - -1.8 57,419 - -0.5 57,419 - -0.8 57,419 - -0.5 57,420 + -3.8 57,425 + -2.2 57,425 + -1.6 57,425 + -1.1 57,426 - -2.4 57,460 + -0.5 57,510 + HMPREF1078_RS07610 0.11 -3.0 57,540 + HMPREF1078_RS07610 0.13 -2.4 57,540 + HMPREF1078_RS07610 0.13 -0.8 57,540 + HMPREF1078_RS07610 0.13 -0.8 57,541 - HMPREF1078_RS07610 0.13 +0.9 57,541 - HMPREF1078_RS07610 0.13 -1.3 57,541 - HMPREF1078_RS07610 0.13 -1.5 57,584 + HMPREF1078_RS07610 0.17 -1.5 57,584 + HMPREF1078_RS07610 0.17 -2.8 57,585 - HMPREF1078_RS07610 0.17 -1.5 57,785 + HMPREF1078_RS07610 0.35 +1.5 57,796 + HMPREF1078_RS07610 0.35 -1.8 57,815 + HMPREF1078_RS07610 0.37 -2.2 57,830 + HMPREF1078_RS07610 0.38 -1.6 57,831 - HMPREF1078_RS07610 0.39 -0.5 57,831 - HMPREF1078_RS07610 0.39 -2.4 57,865 - HMPREF1078_RS07610 0.41 -0.5 57,891 - HMPREF1078_RS07610 0.44 -1.8 57,893 + HMPREF1078_RS07610 0.44 -0.5 57,948 - HMPREF1078_RS07610 0.49 -0.6 57,948 - HMPREF1078_RS07610 0.49 -2.4 57,952 - HMPREF1078_RS07610 0.49 -0.6 57,981 + HMPREF1078_RS07610 0.51 -0.5 58,035 + HMPREF1078_RS07610 0.56 -1.6 58,036 - HMPREF1078_RS07610 0.56 -1.3 58,058 + HMPREF1078_RS07610 0.58 -3.1 58,299 - HMPREF1078_RS07610 0.79 -3.6
Or see this region's nucleotide sequence