Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07305 and HMPREF1078_RS07310 are separated by 63 nucleotides HMPREF1078_RS07310 and HMPREF1078_RS07315 are separated by 59 nucleotides
HMPREF1078_RS07305: HMPREF1078_RS07305 - InlB B-repeat-containing protein, at 886,631 to 890,473
_RS07305
HMPREF1078_RS07310: HMPREF1078_RS07310 - methionine--tRNA ligase, at 890,537 to 892,576
_RS07310
HMPREF1078_RS07315: HMPREF1078_RS07315 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 892,636 to 893,802
_RS07315
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 889.594 kb on - strand, within HMPREF1078_RS07305 at 889.594 kb on - strand, within HMPREF1078_RS07305 at 889.659 kb on + strand, within HMPREF1078_RS07305 at 889.659 kb on + strand, within HMPREF1078_RS07305 at 889.660 kb on - strand, within HMPREF1078_RS07305 at 889.691 kb on - strand, within HMPREF1078_RS07305 at 889.766 kb on + strand, within HMPREF1078_RS07305 at 889.779 kb on + strand, within HMPREF1078_RS07305 at 889.780 kb on - strand, within HMPREF1078_RS07305 at 889.780 kb on - strand, within HMPREF1078_RS07305 at 889.818 kb on + strand, within HMPREF1078_RS07305 at 889.880 kb on + strand, within HMPREF1078_RS07305 at 889.880 kb on + strand, within HMPREF1078_RS07305 at 889.881 kb on - strand, within HMPREF1078_RS07305 at 889.881 kb on - strand, within HMPREF1078_RS07305 at 889.882 kb on + strand, within HMPREF1078_RS07305 at 889.974 kb on - strand, within HMPREF1078_RS07305 at 890.036 kb on + strand, within HMPREF1078_RS07305 at 890.036 kb on + strand, within HMPREF1078_RS07305 at 890.036 kb on + strand, within HMPREF1078_RS07305 at 890.037 kb on - strand, within HMPREF1078_RS07305 at 890.037 kb on - strand, within HMPREF1078_RS07305 at 890.037 kb on - strand, within HMPREF1078_RS07305 at 890.037 kb on - strand, within HMPREF1078_RS07305 at 890.037 kb on - strand, within HMPREF1078_RS07305 at 890.080 kb on + strand, within HMPREF1078_RS07305 at 890.097 kb on + strand at 890.098 kb on - strand at 890.146 kb on + strand at 890.146 kb on + strand at 890.146 kb on + strand at 890.146 kb on + strand at 890.147 kb on - strand at 890.147 kb on - strand at 890.147 kb on - strand at 890.147 kb on - strand at 890.147 kb on - strand at 890.193 kb on - strand at 890.212 kb on + strand at 890.280 kb on + strand at 890.280 kb on + strand at 890.281 kb on - strand at 890.281 kb on - strand at 890.281 kb on - strand at 890.285 kb on - strand at 890.285 kb on - strand at 890.350 kb on + strand at 890.403 kb on - strand at 890.423 kb on + strand at 890.463 kb on + strand at 890.477 kb on - strand at 890.477 kb on - strand at 890.477 kb on - strand at 890.477 kb on - strand at 890.477 kb on - strand at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.230 kb on - strand, within HMPREF1078_RS07310 at 892.551 kb on + strand at 892.551 kb on + strand at 892.610 kb on + strand at 892.629 kb on + strand at 892.630 kb on - strand at 892.630 kb on - strand at 892.632 kb on + strand at 892.632 kb on + strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.634 kb on + strand at 892.634 kb on + strand at 892.635 kb on - strand at 892.635 kb on - strand at 892.653 kb on - strand at 892.653 kb on - strand at 892.678 kb on + strand at 892.679 kb on - strand at 892.679 kb on - strand at 892.787 kb on - strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.886 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.901 kb on - strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.977 kb on + strand, within HMPREF1078_RS07315 at 892.978 kb on - strand, within HMPREF1078_RS07315 at 893.074 kb on - strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.105 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.317 kb on + strand, within HMPREF1078_RS07315 at 893.318 kb on - strand, within HMPREF1078_RS07315 at 893.507 kb on - strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.528 kb on + strand, within HMPREF1078_RS07315
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 889,594 - HMPREF1078_RS07305 0.77 +0.5 889,594 - HMPREF1078_RS07305 0.77 -1.4 889,659 + HMPREF1078_RS07305 0.79 -0.3 889,659 + HMPREF1078_RS07305 0.79 -0.3 889,660 - HMPREF1078_RS07305 0.79 +2.8 889,691 - HMPREF1078_RS07305 0.80 -1.6 889,766 + HMPREF1078_RS07305 0.82 -0.5 889,779 + HMPREF1078_RS07305 0.82 +1.4 889,780 - HMPREF1078_RS07305 0.82 -0.7 889,780 - HMPREF1078_RS07305 0.82 +0.3 889,818 + HMPREF1078_RS07305 0.83 -1.1 889,880 + HMPREF1078_RS07305 0.85 +0.1 889,880 + HMPREF1078_RS07305 0.85 +0.1 889,881 - HMPREF1078_RS07305 0.85 +0.5 889,881 - HMPREF1078_RS07305 0.85 -0.1 889,882 + HMPREF1078_RS07305 0.85 -0.0 889,974 - HMPREF1078_RS07305 0.87 -0.0 890,036 + HMPREF1078_RS07305 0.89 +0.7 890,036 + HMPREF1078_RS07305 0.89 -0.9 890,036 + HMPREF1078_RS07305 0.89 -2.7 890,037 - HMPREF1078_RS07305 0.89 -0.2 890,037 - HMPREF1078_RS07305 0.89 -1.8 890,037 - HMPREF1078_RS07305 0.89 -0.7 890,037 - HMPREF1078_RS07305 0.89 -0.4 890,037 - HMPREF1078_RS07305 0.89 -0.2 890,080 + HMPREF1078_RS07305 0.90 +0.9 890,097 + +0.2 890,098 - -0.2 890,146 + -2.8 890,146 + -1.0 890,146 + +0.0 890,146 + -1.0 890,147 - -0.6 890,147 - -0.2 890,147 - +2.1 890,147 - -0.1 890,147 - +0.5 890,193 - -0.4 890,212 + -2.1 890,280 + +0.7 890,280 + -2.4 890,281 - -2.2 890,281 - -0.6 890,281 - -1.1 890,285 - +1.5 890,285 - +0.1 890,350 + -0.5 890,403 - -1.5 890,423 + -0.9 890,463 + -1.9 890,477 - -1.9 890,477 - -1.8 890,477 - +0.2 890,477 - -1.3 890,477 - -0.5 892,229 + HMPREF1078_RS07310 0.83 -2.8 892,229 + HMPREF1078_RS07310 0.83 -3.8 892,229 + HMPREF1078_RS07310 0.83 -1.8 892,229 + HMPREF1078_RS07310 0.83 -2.1 892,229 + HMPREF1078_RS07310 0.83 -2.5 892,230 - HMPREF1078_RS07310 0.83 -3.2 892,551 + -3.6 892,551 + -4.3 892,610 + +0.8 892,629 + -0.4 892,630 - -1.2 892,630 - -3.6 892,632 + +0.0 892,632 + -2.6 892,633 - -4.1 892,633 - -1.8 892,633 - -2.4 892,633 - -2.9 892,633 - -2.7 892,634 + -1.3 892,634 + -0.0 892,635 - +0.4 892,635 - -0.2 892,653 - -1.9 892,653 - -3.1 892,678 + -1.6 892,679 - -3.1 892,679 - -2.1 892,787 - HMPREF1078_RS07315 0.13 +1.0 892,801 + HMPREF1078_RS07315 0.14 -0.9 892,801 + HMPREF1078_RS07315 0.14 -2.5 892,886 + HMPREF1078_RS07315 0.21 -1.3 892,900 + HMPREF1078_RS07315 0.23 -2.1 892,900 + HMPREF1078_RS07315 0.23 -1.3 892,900 + HMPREF1078_RS07315 0.23 -2.6 892,901 - HMPREF1078_RS07315 0.23 +0.1 892,902 + HMPREF1078_RS07315 0.23 -1.5 892,902 + HMPREF1078_RS07315 0.23 -0.2 892,902 + HMPREF1078_RS07315 0.23 -1.6 892,903 - HMPREF1078_RS07315 0.23 -1.4 892,903 - HMPREF1078_RS07315 0.23 -3.9 892,903 - HMPREF1078_RS07315 0.23 -4.2 892,903 - HMPREF1078_RS07315 0.23 -0.2 892,969 - HMPREF1078_RS07315 0.29 -1.4 892,969 - HMPREF1078_RS07315 0.29 -4.0 892,977 + HMPREF1078_RS07315 0.29 -1.5 892,978 - HMPREF1078_RS07315 0.29 -2.2 893,074 - HMPREF1078_RS07315 0.38 -3.1 893,101 + HMPREF1078_RS07315 0.40 -0.5 893,101 + HMPREF1078_RS07315 0.40 -3.0 893,101 + HMPREF1078_RS07315 0.40 -1.6 893,101 + HMPREF1078_RS07315 0.40 -2.0 893,101 + HMPREF1078_RS07315 0.40 -0.7 893,101 + HMPREF1078_RS07315 0.40 -1.5 893,101 - HMPREF1078_RS07315 0.40 -2.6 893,102 - HMPREF1078_RS07315 0.40 -0.9 893,102 - HMPREF1078_RS07315 0.40 -1.4 893,102 - HMPREF1078_RS07315 0.40 -4.0 893,105 + HMPREF1078_RS07315 0.40 -2.7 893,187 + HMPREF1078_RS07315 0.47 -3.0 893,187 + HMPREF1078_RS07315 0.47 -3.2 893,317 + HMPREF1078_RS07315 0.58 -1.9 893,318 - HMPREF1078_RS07315 0.58 -2.4 893,507 - HMPREF1078_RS07315 0.75 -0.9 893,517 + HMPREF1078_RS07315 0.75 -2.0 893,517 + HMPREF1078_RS07315 0.75 -1.8 893,528 + HMPREF1078_RS07315 0.76 -1.9
Or see this region's nucleotide sequence