Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05500 and HMPREF1078_RS05505 are separated by 88 nucleotides HMPREF1078_RS05505 and HMPREF1078_RS05510 are separated by 6 nucleotides
HMPREF1078_RS05500: HMPREF1078_RS05500 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 388,890 to 390,317
_RS05500
HMPREF1078_RS05505: HMPREF1078_RS05505 - gliding motility protein GldL, at 390,406 to 391,437
_RS05505
HMPREF1078_RS05510: HMPREF1078_RS05510 - gliding motility protein GldM, at 391,444 to 393,012
_RS05510
Position (kb) 390
391
392 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 389.419 kb on - strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.478 kb on - strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.624 kb on + strand, within HMPREF1078_RS05500 at 389.625 kb on - strand, within HMPREF1078_RS05500 at 389.629 kb on - strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.694 kb on + strand, within HMPREF1078_RS05500 at 389.695 kb on - strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.768 kb on - strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.892 kb on + strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on - strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.969 kb on + strand, within HMPREF1078_RS05500 at 389.970 kb on - strand, within HMPREF1078_RS05500 at 390.127 kb on - strand, within HMPREF1078_RS05500 at 390.150 kb on + strand, within HMPREF1078_RS05500 at 390.172 kb on + strand, within HMPREF1078_RS05500 at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.347 kb on - strand at 390.358 kb on - strand at 390.358 kb on - strand at 390.359 kb on + strand at 390.360 kb on - strand at 390.360 kb on - strand at 390.364 kb on + strand at 390.364 kb on + strand at 390.366 kb on + strand at 390.366 kb on + strand at 390.379 kb on + strand at 390.381 kb on + strand at 390.388 kb on + strand at 390.391 kb on - strand at 390.401 kb on + strand at 390.451 kb on + strand at 390.453 kb on + strand at 390.453 kb on + strand at 390.474 kb on + strand at 390.475 kb on - strand at 390.475 kb on - strand at 390.477 kb on + strand at 390.478 kb on - strand at 390.479 kb on + strand at 390.480 kb on - strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.565 kb on - strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.740 kb on + strand, within HMPREF1078_RS05505 at 390.820 kb on - strand, within HMPREF1078_RS05505 at 390.889 kb on + strand, within HMPREF1078_RS05505 at 390.890 kb on - strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.986 kb on - strand, within HMPREF1078_RS05505 at 390.988 kb on - strand, within HMPREF1078_RS05505 at 390.996 kb on + strand, within HMPREF1078_RS05505 at 391.098 kb on - strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.141 kb on - strand, within HMPREF1078_RS05505 at 391.175 kb on - strand, within HMPREF1078_RS05505 at 391.257 kb on - strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.279 kb on - strand, within HMPREF1078_RS05505 at 391.367 kb on - strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.417 kb on - strand at 391.435 kb on + strand at 391.461 kb on + strand at 391.461 kb on + strand at 391.501 kb on + strand at 391.502 kb on - strand at 391.502 kb on - strand at 391.584 kb on + strand at 391.585 kb on - strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.789 kb on - strand, within HMPREF1078_RS05510 at 391.792 kb on - strand, within HMPREF1078_RS05510 at 392.016 kb on + strand, within HMPREF1078_RS05510 at 392.038 kb on - strand, within HMPREF1078_RS05510 at 392.072 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.203 kb on - strand, within HMPREF1078_RS05510 at 392.210 kb on + strand, within HMPREF1078_RS05510 at 392.245 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.297 kb on + strand, within HMPREF1078_RS05510 at 392.332 kb on + strand, within HMPREF1078_RS05510 at 392.334 kb on + strand, within HMPREF1078_RS05510 at 392.389 kb on + strand, within HMPREF1078_RS05510 at 392.390 kb on - strand, within HMPREF1078_RS05510
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 389,419 - HMPREF1078_RS05500 0.37 -2.3 389,426 + HMPREF1078_RS05500 0.38 +0.4 389,426 + HMPREF1078_RS05500 0.38 -2.5 389,426 + HMPREF1078_RS05500 0.38 +1.4 389,426 + HMPREF1078_RS05500 0.38 -2.0 389,427 - HMPREF1078_RS05500 0.38 +0.4 389,427 - HMPREF1078_RS05500 0.38 -0.1 389,427 - HMPREF1078_RS05500 0.38 +0.4 389,478 - HMPREF1078_RS05500 0.41 -0.9 389,535 + HMPREF1078_RS05500 0.45 -2.6 389,535 + HMPREF1078_RS05500 0.45 -2.3 389,624 + HMPREF1078_RS05500 0.51 -0.1 389,625 - HMPREF1078_RS05500 0.51 -1.4 389,629 - HMPREF1078_RS05500 0.52 -1.9 389,682 + HMPREF1078_RS05500 0.55 +0.4 389,682 + HMPREF1078_RS05500 0.55 -0.1 389,682 + HMPREF1078_RS05500 0.55 -1.4 389,682 + HMPREF1078_RS05500 0.55 -1.1 389,683 - HMPREF1078_RS05500 0.56 -1.6 389,683 - HMPREF1078_RS05500 0.56 -1.6 389,684 + HMPREF1078_RS05500 0.56 -2.8 389,684 + HMPREF1078_RS05500 0.56 -0.9 389,684 + HMPREF1078_RS05500 0.56 -1.4 389,684 + HMPREF1078_RS05500 0.56 -1.4 389,685 - HMPREF1078_RS05500 0.56 -1.4 389,685 - HMPREF1078_RS05500 0.56 -0.9 389,685 - HMPREF1078_RS05500 0.56 -1.6 389,685 - HMPREF1078_RS05500 0.56 -2.0 389,690 + HMPREF1078_RS05500 0.56 -2.9 389,690 + HMPREF1078_RS05500 0.56 -1.4 389,690 + HMPREF1078_RS05500 0.56 -2.7 389,690 + HMPREF1078_RS05500 0.56 -1.1 389,690 + HMPREF1078_RS05500 0.56 -0.1 389,690 + HMPREF1078_RS05500 0.56 -2.0 389,690 + HMPREF1078_RS05500 0.56 -1.7 389,691 - HMPREF1078_RS05500 0.56 -0.9 389,691 - HMPREF1078_RS05500 0.56 -2.4 389,691 - HMPREF1078_RS05500 0.56 -0.9 389,691 - HMPREF1078_RS05500 0.56 -0.6 389,691 - HMPREF1078_RS05500 0.56 -0.9 389,691 - HMPREF1078_RS05500 0.56 +0.4 389,694 + HMPREF1078_RS05500 0.56 -0.6 389,695 - HMPREF1078_RS05500 0.56 -0.9 389,731 + HMPREF1078_RS05500 0.59 -0.6 389,731 + HMPREF1078_RS05500 0.59 -0.6 389,768 - HMPREF1078_RS05500 0.61 -0.9 389,859 + HMPREF1078_RS05500 0.68 -1.4 389,859 + HMPREF1078_RS05500 0.68 -2.6 389,892 + HMPREF1078_RS05500 0.70 -0.9 389,893 - HMPREF1078_RS05500 0.70 +0.4 389,893 - HMPREF1078_RS05500 0.70 -2.8 389,963 + HMPREF1078_RS05500 0.75 -2.0 389,963 + HMPREF1078_RS05500 0.75 -2.7 389,967 + HMPREF1078_RS05500 0.75 -1.4 389,967 + HMPREF1078_RS05500 0.75 -2.8 389,967 + HMPREF1078_RS05500 0.75 -1.9 389,967 - HMPREF1078_RS05500 0.75 -1.4 389,968 - HMPREF1078_RS05500 0.75 -0.6 389,968 - HMPREF1078_RS05500 0.75 -2.0 389,969 + HMPREF1078_RS05500 0.76 -3.8 389,970 - HMPREF1078_RS05500 0.76 -1.1 390,127 - HMPREF1078_RS05500 0.87 -1.6 390,150 + HMPREF1078_RS05500 0.88 -1.9 390,172 + HMPREF1078_RS05500 0.90 -1.6 390,255 + -2.4 390,255 + -0.1 390,255 + -1.1 390,255 + -1.6 390,256 - -1.4 390,256 - -1.1 390,256 - -1.6 390,256 - +1.4 390,347 - +1.4 390,358 - -0.1 390,358 - -1.6 390,359 + -2.4 390,360 - -1.6 390,360 - +1.4 390,364 + -3.0 390,364 + -1.7 390,366 + +1.4 390,366 + -2.6 390,379 + -2.0 390,381 + -2.1 390,388 + -0.6 390,391 - +1.4 390,401 + -2.0 390,451 + -1.7 390,453 + -1.6 390,453 + -2.0 390,474 + -0.6 390,475 - +1.4 390,475 - -0.9 390,477 + -2.0 390,478 - -1.7 390,479 + -1.4 390,480 - +0.4 390,500 + -2.0 390,500 + -1.9 390,500 + -1.6 390,565 - HMPREF1078_RS05505 0.15 -1.6 390,669 + HMPREF1078_RS05505 0.25 -2.6 390,669 + HMPREF1078_RS05505 0.25 -1.1 390,740 + HMPREF1078_RS05505 0.32 +0.4 390,820 - HMPREF1078_RS05505 0.40 -0.9 390,889 + HMPREF1078_RS05505 0.47 -1.1 390,890 - HMPREF1078_RS05505 0.47 -1.6 390,909 + HMPREF1078_RS05505 0.49 -2.4 390,909 + HMPREF1078_RS05505 0.49 -2.6 390,986 - HMPREF1078_RS05505 0.56 -1.1 390,988 - HMPREF1078_RS05505 0.56 -1.1 390,996 + HMPREF1078_RS05505 0.57 -2.1 391,098 - HMPREF1078_RS05505 0.67 -1.7 391,140 + HMPREF1078_RS05505 0.71 -1.6 391,140 + HMPREF1078_RS05505 0.71 -2.7 391,140 + HMPREF1078_RS05505 0.71 -1.4 391,140 + HMPREF1078_RS05505 0.71 -1.6 391,140 + HMPREF1078_RS05505 0.71 -2.3 391,141 - HMPREF1078_RS05505 0.71 -1.7 391,175 - HMPREF1078_RS05505 0.75 -0.6 391,257 - HMPREF1078_RS05505 0.82 -1.7 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,258 + HMPREF1078_RS05505 0.83 -0.9 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,259 - HMPREF1078_RS05505 0.83 -0.1 391,259 - HMPREF1078_RS05505 0.83 -0.1 391,279 - HMPREF1078_RS05505 0.85 +1.4 391,367 - -2.0 391,416 + -2.0 391,416 + +1.4 391,416 + -1.1 391,417 - -1.4 391,435 + -1.9 391,461 + -0.1 391,461 + -1.9 391,501 + -1.1 391,502 - -1.9 391,502 - -0.6 391,584 + -0.6 391,585 - -0.1 391,590 + -2.0 391,591 - -2.0 391,642 + HMPREF1078_RS05510 0.13 -2.0 391,642 + HMPREF1078_RS05510 0.13 -0.1 391,642 + HMPREF1078_RS05510 0.13 -1.7 391,642 + HMPREF1078_RS05510 0.13 -2.3 391,642 + HMPREF1078_RS05510 0.13 -1.6 391,642 + HMPREF1078_RS05510 0.13 -0.6 391,643 - HMPREF1078_RS05510 0.13 +0.4 391,643 - HMPREF1078_RS05510 0.13 +1.4 391,667 + HMPREF1078_RS05510 0.14 +1.4 391,667 + HMPREF1078_RS05510 0.14 -1.7 391,727 - HMPREF1078_RS05510 0.18 -1.1 391,727 - HMPREF1078_RS05510 0.18 -2.8 391,789 - HMPREF1078_RS05510 0.22 -0.6 391,792 - HMPREF1078_RS05510 0.22 +0.4 392,016 + HMPREF1078_RS05510 0.36 -1.7 392,038 - HMPREF1078_RS05510 0.38 -1.4 392,072 - HMPREF1078_RS05510 0.40 -0.1 392,192 - HMPREF1078_RS05510 0.48 -2.3 392,192 - HMPREF1078_RS05510 0.48 -2.0 392,203 - HMPREF1078_RS05510 0.48 +0.4 392,210 + HMPREF1078_RS05510 0.49 -1.7 392,245 + HMPREF1078_RS05510 0.51 -1.7 392,269 + HMPREF1078_RS05510 0.53 +1.4 392,269 + HMPREF1078_RS05510 0.53 -1.1 392,270 - HMPREF1078_RS05510 0.53 -0.9 392,270 - HMPREF1078_RS05510 0.53 -1.9 392,297 + HMPREF1078_RS05510 0.54 -1.1 392,332 + HMPREF1078_RS05510 0.57 -0.1 392,334 + HMPREF1078_RS05510 0.57 -1.1 392,389 + HMPREF1078_RS05510 0.60 -1.4 392,390 - HMPREF1078_RS05510 0.60 -2.5
Or see this region's nucleotide sequence