Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04155

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04145 and HMPREF1078_RS04150 are separated by 11 nucleotidesHMPREF1078_RS04150 and HMPREF1078_RS04155 are separated by 6 nucleotidesHMPREF1078_RS04155 and HMPREF1078_RS04160 overlap by 4 nucleotides HMPREF1078_RS04145: HMPREF1078_RS04145 - peptide chain release factor 3, at 42,677 to 44,257 _RS04145 HMPREF1078_RS04150: HMPREF1078_RS04150 - dTDP-4-dehydrorhamnose reductase, at 44,269 to 45,135 _RS04150 HMPREF1078_RS04155: HMPREF1078_RS04155 - DUF4924 family protein, at 45,142 to 45,690 _RS04155 HMPREF1078_RS04160: HMPREF1078_RS04160 - Mur ligase family protein, at 45,687 to 46,613 _RS04160 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1at 44.188 kb on + strandat 44.209 kb on + strandat 44.210 kb on - strandat 44.212 kb on + strandat 44.212 kb on + strandat 44.261 kb on + strandat 44.266 kb on - strandat 44.290 kb on - strandat 45.144 kb on - strandat 45.387 kb on - strand, within HMPREF1078_RS04155at 45.387 kb on - strand, within HMPREF1078_RS04155at 45.387 kb on - strand, within HMPREF1078_RS04155at 45.466 kb on - strand, within HMPREF1078_RS04155at 45.466 kb on - strand, within HMPREF1078_RS04155at 45.466 kb on - strand, within HMPREF1078_RS04155at 45.509 kb on - strand, within HMPREF1078_RS04155at 45.542 kb on - strand, within HMPREF1078_RS04155at 45.544 kb on - strand, within HMPREF1078_RS04155at 45.604 kb on - strand, within HMPREF1078_RS04155at 45.614 kb on - strand, within HMPREF1078_RS04155at 45.614 kb on - strand, within HMPREF1078_RS04155at 45.614 kb on - strand, within HMPREF1078_RS04155at 45.614 kb on - strand, within HMPREF1078_RS04155at 45.614 kb on - strand, within HMPREF1078_RS04155at 45.639 kb on - strandat 45.639 kb on - strandat 45.639 kb on - strandat 45.648 kb on - strandat 45.648 kb on - strandat 45.702 kb on + strandat 45.703 kb on - strandat 45.707 kb on + strandat 45.708 kb on - strandat 45.708 kb on - strandat 45.708 kb on - strandat 45.809 kb on + strand, within HMPREF1078_RS04160at 45.845 kb on - strand, within HMPREF1078_RS04160at 45.884 kb on - strand, within HMPREF1078_RS04160at 45.992 kb on + strand, within HMPREF1078_RS04160at 46.064 kb on + strand, within HMPREF1078_RS04160at 46.120 kb on - strand, within HMPREF1078_RS04160at 46.120 kb on - strand, within HMPREF1078_RS04160at 46.120 kb on - strand, within HMPREF1078_RS04160at 46.160 kb on - strand, within HMPREF1078_RS04160at 46.350 kb on + strand, within HMPREF1078_RS04160at 46.350 kb on + strand, within HMPREF1078_RS04160at 46.351 kb on - strand, within HMPREF1078_RS04160at 46.371 kb on + strand, within HMPREF1078_RS04160at 46.371 kb on + strand, within HMPREF1078_RS04160at 46.371 kb on + strand, within HMPREF1078_RS04160at 46.372 kb on - strand, within HMPREF1078_RS04160at 46.407 kb on + strand, within HMPREF1078_RS04160at 46.411 kb on - strand, within HMPREF1078_RS04160at 46.422 kb on + strand, within HMPREF1078_RS04160at 46.423 kb on - strand, within HMPREF1078_RS04160at 46.424 kb on + strand, within HMPREF1078_RS04160at 46.425 kb on - strand, within HMPREF1078_RS04160at 46.430 kb on + strand, within HMPREF1078_RS04160at 46.430 kb on + strand, within HMPREF1078_RS04160at 46.435 kb on - strand, within HMPREF1078_RS04160at 46.435 kb on - strand, within HMPREF1078_RS04160at 46.435 kb on - strand, within HMPREF1078_RS04160at 46.435 kb on - strand, within HMPREF1078_RS04160at 46.470 kb on - strand, within HMPREF1078_RS04160at 46.503 kb on - strand, within HMPREF1078_RS04160at 46.524 kb on + strandat 46.531 kb on - strandat 46.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
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44,188 + -2.2
44,209 + -1.2
44,210 - -1.1
44,212 + +0.2
44,212 + -1.4
44,261 + +0.2
44,266 - -0.2
44,290 - -2.3
45,144 - +0.7
45,387 - HMPREF1078_RS04155 0.45 -1.5
45,387 - HMPREF1078_RS04155 0.45 +1.0
45,387 - HMPREF1078_RS04155 0.45 -1.2
45,466 - HMPREF1078_RS04155 0.59 -1.4
45,466 - HMPREF1078_RS04155 0.59 +0.9
45,466 - HMPREF1078_RS04155 0.59 -1.5
45,509 - HMPREF1078_RS04155 0.67 -0.3
45,542 - HMPREF1078_RS04155 0.73 +0.3
45,544 - HMPREF1078_RS04155 0.73 -0.9
45,604 - HMPREF1078_RS04155 0.84 -2.2
45,614 - HMPREF1078_RS04155 0.86 -0.1
45,614 - HMPREF1078_RS04155 0.86 -0.9
45,614 - HMPREF1078_RS04155 0.86 -2.0
45,614 - HMPREF1078_RS04155 0.86 +1.5
45,614 - HMPREF1078_RS04155 0.86 -1.0
45,639 - -2.4
45,639 - +0.1
45,639 - -0.1
45,648 - -1.0
45,648 - -2.6
45,702 + -0.8
45,703 - -0.5
45,707 + -1.1
45,708 - -1.8
45,708 - -0.5
45,708 - +0.3
45,809 + HMPREF1078_RS04160 0.13 +0.5
45,845 - HMPREF1078_RS04160 0.17 -0.8
45,884 - HMPREF1078_RS04160 0.21 -2.4
45,992 + HMPREF1078_RS04160 0.33 -0.1
46,064 + HMPREF1078_RS04160 0.41 +0.8
46,120 - HMPREF1078_RS04160 0.47 -1.0
46,120 - HMPREF1078_RS04160 0.47 +0.5
46,120 - HMPREF1078_RS04160 0.47 +0.2
46,160 - HMPREF1078_RS04160 0.51 -2.8
46,350 + HMPREF1078_RS04160 0.72 -1.1
46,350 + HMPREF1078_RS04160 0.72 -0.1
46,351 - HMPREF1078_RS04160 0.72 +0.5
46,371 + HMPREF1078_RS04160 0.74 -0.5
46,371 + HMPREF1078_RS04160 0.74 +0.6
46,371 + HMPREF1078_RS04160 0.74 -1.7
46,372 - HMPREF1078_RS04160 0.74 -1.1
46,407 + HMPREF1078_RS04160 0.78 -0.8
46,411 - HMPREF1078_RS04160 0.78 -0.1
46,422 + HMPREF1078_RS04160 0.79 -1.0
46,423 - HMPREF1078_RS04160 0.79 -0.8
46,424 + HMPREF1078_RS04160 0.80 +0.5
46,425 - HMPREF1078_RS04160 0.80 +1.0
46,430 + HMPREF1078_RS04160 0.80 +1.5
46,430 + HMPREF1078_RS04160 0.80 -2.2
46,435 - HMPREF1078_RS04160 0.81 -0.7
46,435 - HMPREF1078_RS04160 0.81 -0.7
46,435 - HMPREF1078_RS04160 0.81 -0.5
46,435 - HMPREF1078_RS04160 0.81 -1.7
46,470 - HMPREF1078_RS04160 0.84 -0.1
46,503 - HMPREF1078_RS04160 0.88 -2.5
46,524 + +0.4
46,531 - -0.1
46,564 - +0.7

Or see this region's nucleotide sequence