Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03055 and HMPREF1078_RS03060 are separated by 8 nucleotides HMPREF1078_RS03060 and HMPREF1078_RS03065 are separated by 135 nucleotides HMPREF1078_RS03065 and HMPREF1078_RS03070 are separated by 8 nucleotides HMPREF1078_RS03070 and HMPREF1078_RS03075 overlap by 4 nucleotides HMPREF1078_RS03075 and HMPREF1078_RS03080 are separated by 58 nucleotides
HMPREF1078_RS03055: HMPREF1078_RS03055 - hypothetical protein, at 730,949 to 732,049
_RS03055
HMPREF1078_RS03060: HMPREF1078_RS03060 - hypothetical protein, at 732,058 to 732,594
_RS03060
HMPREF1078_RS03065: HMPREF1078_RS03065 - hypothetical protein, at 732,730 to 733,029
_RS03065
HMPREF1078_RS03070: HMPREF1078_RS03070 - hypothetical protein, at 733,038 to 733,460
_RS03070
HMPREF1078_RS03075: HMPREF1078_RS03075 - hypothetical protein, at 733,457 to 733,930
_RS03075
HMPREF1078_RS03080: HMPREF1078_RS03080 - hypothetical protein, at 733,989 to 736,562
_RS03080
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 731.765 kb on + strand, within HMPREF1078_RS03055 at 731.858 kb on + strand, within HMPREF1078_RS03055 at 731.871 kb on - strand, within HMPREF1078_RS03055 at 731.872 kb on + strand, within HMPREF1078_RS03055 at 731.968 kb on + strand at 731.974 kb on + strand at 732.063 kb on + strand at 732.088 kb on + strand at 732.164 kb on + strand, within HMPREF1078_RS03060 at 732.252 kb on + strand, within HMPREF1078_RS03060 at 732.352 kb on + strand, within HMPREF1078_RS03060 at 732.396 kb on + strand, within HMPREF1078_RS03060 at 732.441 kb on + strand, within HMPREF1078_RS03060 at 732.455 kb on + strand, within HMPREF1078_RS03060 at 732.580 kb on + strand at 732.580 kb on + strand at 732.594 kb on + strand at 732.600 kb on + strand at 732.624 kb on + strand at 732.673 kb on + strand at 732.675 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.869 kb on + strand, within HMPREF1078_RS03065 at 732.888 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.902 kb on - strand, within HMPREF1078_RS03065 at 732.903 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.919 kb on + strand, within HMPREF1078_RS03065 at 732.920 kb on - strand, within HMPREF1078_RS03065 at 732.923 kb on + strand, within HMPREF1078_RS03065 at 732.924 kb on - strand, within HMPREF1078_RS03065 at 732.933 kb on + strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 733.027 kb on + strand at 733.027 kb on + strand at 733.032 kb on + strand at 733.033 kb on - strand at 733.037 kb on + strand at 733.038 kb on - strand at 733.038 kb on - strand at 733.104 kb on - strand, within HMPREF1078_RS03070 at 733.105 kb on + strand, within HMPREF1078_RS03070 at 733.105 kb on + strand, within HMPREF1078_RS03070 at 733.222 kb on - strand, within HMPREF1078_RS03070 at 733.222 kb on - strand, within HMPREF1078_RS03070 at 733.298 kb on - strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.393 kb on - strand, within HMPREF1078_RS03070 at 733.415 kb on + strand, within HMPREF1078_RS03070 at 733.418 kb on + strand at 733.603 kb on + strand, within HMPREF1078_RS03075 at 733.616 kb on + strand, within HMPREF1078_RS03075 at 733.618 kb on + strand, within HMPREF1078_RS03075 at 733.619 kb on - strand, within HMPREF1078_RS03075 at 733.775 kb on + strand, within HMPREF1078_RS03075 at 733.775 kb on + strand, within HMPREF1078_RS03075 at 733.776 kb on - strand, within HMPREF1078_RS03075 at 733.789 kb on + strand, within HMPREF1078_RS03075 at 733.790 kb on - strand, within HMPREF1078_RS03075 at 733.794 kb on + strand, within HMPREF1078_RS03075 at 733.796 kb on + strand, within HMPREF1078_RS03075 at 733.797 kb on - strand, within HMPREF1078_RS03075 at 733.797 kb on - strand, within HMPREF1078_RS03075 at 733.806 kb on - strand, within HMPREF1078_RS03075 at 733.845 kb on + strand, within HMPREF1078_RS03075 at 733.874 kb on - strand, within HMPREF1078_RS03075 at 733.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 731,765 + HMPREF1078_RS03055 0.74 -0.2 731,858 + HMPREF1078_RS03055 0.83 +2.2 731,871 - HMPREF1078_RS03055 0.84 +1.5 731,872 + HMPREF1078_RS03055 0.84 -1.2 731,968 + +0.9 731,974 + -1.9 732,063 + -0.0 732,088 + +1.2 732,164 + HMPREF1078_RS03060 0.20 +0.5 732,252 + HMPREF1078_RS03060 0.36 +0.8 732,352 + HMPREF1078_RS03060 0.55 +2.0 732,396 + HMPREF1078_RS03060 0.63 -0.8 732,441 + HMPREF1078_RS03060 0.71 +0.5 732,455 + HMPREF1078_RS03060 0.74 +2.3 732,580 + -2.2 732,580 + +1.2 732,594 + -0.5 732,600 + +0.7 732,624 + +2.5 732,673 + -1.1 732,675 + -2.5 732,729 + -0.8 732,729 + -0.3 732,729 + +4.0 732,729 + +0.8 732,729 + +0.5 732,729 + -1.9 732,729 + +0.5 732,869 + HMPREF1078_RS03065 0.46 -2.6 732,888 + HMPREF1078_RS03065 0.53 -0.6 732,901 + HMPREF1078_RS03065 0.57 -0.8 732,901 + HMPREF1078_RS03065 0.57 +0.5 732,902 - HMPREF1078_RS03065 0.57 -0.5 732,903 + HMPREF1078_RS03065 0.58 +0.2 732,914 + HMPREF1078_RS03065 0.61 +1.5 732,914 + HMPREF1078_RS03065 0.61 -1.5 732,919 + HMPREF1078_RS03065 0.63 -0.1 732,920 - HMPREF1078_RS03065 0.63 -0.1 732,923 + HMPREF1078_RS03065 0.64 +1.5 732,924 - HMPREF1078_RS03065 0.65 -0.1 732,933 + HMPREF1078_RS03065 0.68 -0.9 732,936 - HMPREF1078_RS03065 0.69 -0.5 732,936 - HMPREF1078_RS03065 0.69 +0.5 733,027 + -0.6 733,027 + -1.9 733,032 + +2.1 733,033 - +0.5 733,037 + -2.2 733,038 - -0.9 733,038 - +0.8 733,104 - HMPREF1078_RS03070 0.16 -1.9 733,105 + HMPREF1078_RS03070 0.16 +3.8 733,105 + HMPREF1078_RS03070 0.16 -1.1 733,222 - HMPREF1078_RS03070 0.43 +0.8 733,222 - HMPREF1078_RS03070 0.43 +1.5 733,298 - HMPREF1078_RS03070 0.61 -1.3 733,317 + HMPREF1078_RS03070 0.66 +0.7 733,317 + HMPREF1078_RS03070 0.66 -1.8 733,317 + HMPREF1078_RS03070 0.66 -0.9 733,317 + HMPREF1078_RS03070 0.66 +0.1 733,317 + HMPREF1078_RS03070 0.66 -0.1 733,393 - HMPREF1078_RS03070 0.84 +1.5 733,415 + HMPREF1078_RS03070 0.89 -0.7 733,418 + -0.5 733,603 + HMPREF1078_RS03075 0.31 +1.0 733,616 + HMPREF1078_RS03075 0.34 +1.5 733,618 + HMPREF1078_RS03075 0.34 -0.6 733,619 - HMPREF1078_RS03075 0.34 +0.7 733,775 + HMPREF1078_RS03075 0.67 +0.9 733,775 + HMPREF1078_RS03075 0.67 -0.5 733,776 - HMPREF1078_RS03075 0.67 +1.0 733,789 + HMPREF1078_RS03075 0.70 +0.8 733,790 - HMPREF1078_RS03075 0.70 +1.4 733,794 + HMPREF1078_RS03075 0.71 -0.5 733,796 + HMPREF1078_RS03075 0.72 -0.1 733,797 - HMPREF1078_RS03075 0.72 +0.3 733,797 - HMPREF1078_RS03075 0.72 -0.5 733,806 - HMPREF1078_RS03075 0.74 -1.5 733,845 + HMPREF1078_RS03075 0.82 +0.2 733,874 - HMPREF1078_RS03075 0.88 +0.5 733,976 - +0.5
Or see this region's nucleotide sequence