Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02455 and HMPREF1078_RS02460 are separated by 285 nucleotides HMPREF1078_RS02460 and HMPREF1078_RS02465 are separated by 16 nucleotides HMPREF1078_RS02465 and HMPREF1078_RS02470 are separated by 0 nucleotides
HMPREF1078_RS02455: HMPREF1078_RS02455 - ATP phosphoribosyltransferase, at 602,553 to 603,404
_RS02455
HMPREF1078_RS02460: HMPREF1078_RS02460 - M1 family aminopeptidase, at 603,690 to 606,236
_RS02460
HMPREF1078_RS02465: HMPREF1078_RS02465 - DUF4268 domain-containing protein, at 606,253 to 606,708
_RS02465
HMPREF1078_RS02470: HMPREF1078_RS02470 - insulinase family protein, at 606,709 to 609,573
_RS02470
Position (kb) 603
604
605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.764 kb on - strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.855 kb on + strand, within HMPREF1078_RS02455 at 603.034 kb on + strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.210 kb on - strand, within HMPREF1078_RS02455 at 603.213 kb on + strand, within HMPREF1078_RS02455 at 603.214 kb on - strand, within HMPREF1078_RS02455 at 603.248 kb on + strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.308 kb on + strand, within HMPREF1078_RS02455 at 603.325 kb on - strand at 603.399 kb on + strand at 603.399 kb on + strand at 603.408 kb on + strand at 603.420 kb on - strand at 603.420 kb on - strand at 603.443 kb on - strand at 603.469 kb on - strand at 603.476 kb on + strand at 603.477 kb on - strand at 603.479 kb on - strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.491 kb on + strand at 603.491 kb on + strand at 603.492 kb on - strand at 603.492 kb on - strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.496 kb on - strand at 603.528 kb on - strand at 603.528 kb on - strand at 603.558 kb on + strand at 603.659 kb on + strand at 603.698 kb on - strand at 603.698 kb on - strand at 603.726 kb on - strand at 603.801 kb on - strand at 603.801 kb on - strand at 603.893 kb on + strand at 604.154 kb on + strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.213 kb on + strand, within HMPREF1078_RS02460 at 604.216 kb on - strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.371 kb on - strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.373 kb on - strand, within HMPREF1078_RS02460 at 604.420 kb on + strand, within HMPREF1078_RS02460 at 604.440 kb on - strand, within HMPREF1078_RS02460 at 604.488 kb on - strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.521 kb on - strand, within HMPREF1078_RS02460 at 604.583 kb on - strand, within HMPREF1078_RS02460 at 604.812 kb on + strand, within HMPREF1078_RS02460 at 604.813 kb on - strand, within HMPREF1078_RS02460 at 604.874 kb on + strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.876 kb on + strand, within HMPREF1078_RS02460 at 604.910 kb on + strand, within HMPREF1078_RS02460 at 604.911 kb on - strand, within HMPREF1078_RS02460 at 604.911 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 605.017 kb on + strand, within HMPREF1078_RS02460 at 605.019 kb on + strand, within HMPREF1078_RS02460 at 605.025 kb on - strand, within HMPREF1078_RS02460 at 605.025 kb on - strand, within HMPREF1078_RS02460 at 605.027 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.033 kb on - strand, within HMPREF1078_RS02460 at 605.033 kb on - strand, within HMPREF1078_RS02460 at 605.120 kb on + strand, within HMPREF1078_RS02460 at 605.176 kb on - strand, within HMPREF1078_RS02460 at 605.191 kb on + strand, within HMPREF1078_RS02460 at 605.192 kb on - strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.348 kb on + strand, within HMPREF1078_RS02460 at 605.349 kb on - strand, within HMPREF1078_RS02460 at 605.349 kb on - strand, within HMPREF1078_RS02460 at 605.351 kb on - strand, within HMPREF1078_RS02460 at 605.353 kb on - strand, within HMPREF1078_RS02460 at 605.367 kb on - strand, within HMPREF1078_RS02460 at 605.413 kb on + strand, within HMPREF1078_RS02460 at 605.414 kb on - strand, within HMPREF1078_RS02460 at 605.428 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.441 kb on + strand, within HMPREF1078_RS02460 at 605.442 kb on - strand, within HMPREF1078_RS02460 at 605.442 kb on - strand, within HMPREF1078_RS02460 at 605.444 kb on - strand, within HMPREF1078_RS02460 at 605.602 kb on + strand, within HMPREF1078_RS02460 at 605.802 kb on - strand, within HMPREF1078_RS02460 at 605.803 kb on + strand, within HMPREF1078_RS02460 at 605.804 kb on - strand, within HMPREF1078_RS02460 at 605.904 kb on - strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.923 kb on + strand, within HMPREF1078_RS02460 at 605.924 kb on - strand, within HMPREF1078_RS02460 at 605.935 kb on + strand, within HMPREF1078_RS02460 at 605.958 kb on + strand, within HMPREF1078_RS02460 at 605.958 kb on + strand, within HMPREF1078_RS02460 at 605.959 kb on - strand, within HMPREF1078_RS02460 at 605.985 kb on + strand at 606.012 kb on - strand at 606.022 kb on - strand at 606.164 kb on + strand at 606.165 kb on - strand at 606.165 kb on - strand at 606.165 kb on - strand at 606.187 kb on - strand at 606.194 kb on + strand at 606.195 kb on - strand at 606.195 kb on - strand at 606.208 kb on - strand at 606.208 kb on - strand at 606.275 kb on - strand at 606.303 kb on - strand, within HMPREF1078_RS02465 at 606.318 kb on + strand, within HMPREF1078_RS02465 at 606.380 kb on + strand, within HMPREF1078_RS02465 at 606.449 kb on + strand, within HMPREF1078_RS02465 at 606.463 kb on - strand, within HMPREF1078_RS02465 at 606.468 kb on + strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.471 kb on - strand, within HMPREF1078_RS02465 at 606.471 kb on - strand, within HMPREF1078_RS02465 at 606.517 kb on - strand, within HMPREF1078_RS02465 at 606.597 kb on - strand, within HMPREF1078_RS02465 at 606.598 kb on + strand, within HMPREF1078_RS02465 at 606.598 kb on + strand, within HMPREF1078_RS02465 at 606.629 kb on + strand, within HMPREF1078_RS02465 at 606.637 kb on + strand, within HMPREF1078_RS02465 at 606.702 kb on + strand at 606.704 kb on + strand at 606.705 kb on - strand at 606.705 kb on - strand at 606.714 kb on + strand at 606.716 kb on + strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.719 kb on - strand at 606.719 kb on - strand at 606.739 kb on + strand at 606.740 kb on - strand at 606.742 kb on + strand at 606.743 kb on - strand at 606.747 kb on + strand at 606.778 kb on - strand at 606.778 kb on - strand at 606.796 kb on - strand at 606.804 kb on - strand at 606.850 kb on - strand at 606.850 kb on - strand at 606.975 kb on + strand at 607.101 kb on + strand, within HMPREF1078_RS02470 at 607.187 kb on - strand, within HMPREF1078_RS02470 at 607.187 kb on - strand, within HMPREF1078_RS02470 at 607.212 kb on + strand, within HMPREF1078_RS02470 at 607.212 kb on + strand, within HMPREF1078_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 602,724 + HMPREF1078_RS02455 0.20 -1.5 602,724 + HMPREF1078_RS02455 0.20 -0.1 602,724 + HMPREF1078_RS02455 0.20 +1.5 602,763 + HMPREF1078_RS02455 0.25 -0.1 602,763 + HMPREF1078_RS02455 0.25 +0.7 602,763 + HMPREF1078_RS02455 0.25 -1.5 602,764 - HMPREF1078_RS02455 0.25 -1.6 602,767 + HMPREF1078_RS02455 0.25 -1.5 602,767 + HMPREF1078_RS02455 0.25 +0.5 602,767 + HMPREF1078_RS02455 0.25 +1.9 602,767 + HMPREF1078_RS02455 0.25 -1.8 602,767 - HMPREF1078_RS02455 0.25 -0.8 602,768 - HMPREF1078_RS02455 0.25 +0.4 602,768 - HMPREF1078_RS02455 0.25 +1.4 602,768 - HMPREF1078_RS02455 0.25 -2.7 602,855 + HMPREF1078_RS02455 0.35 -0.8 603,034 + HMPREF1078_RS02455 0.56 +1.5 603,035 - HMPREF1078_RS02455 0.57 +0.1 603,035 - HMPREF1078_RS02455 0.57 -0.5 603,190 + HMPREF1078_RS02455 0.75 +1.0 603,190 + HMPREF1078_RS02455 0.75 +0.5 603,210 - HMPREF1078_RS02455 0.77 -2.6 603,213 + HMPREF1078_RS02455 0.77 +0.5 603,214 - HMPREF1078_RS02455 0.78 -1.8 603,248 + HMPREF1078_RS02455 0.82 -1.1 603,268 - HMPREF1078_RS02455 0.84 -1.9 603,268 - HMPREF1078_RS02455 0.84 +0.7 603,308 + HMPREF1078_RS02455 0.89 -1.5 603,325 - -1.3 603,399 + -0.8 603,399 + +0.5 603,408 + +1.5 603,420 - -0.8 603,420 - -0.1 603,443 - +0.9 603,469 - +1.7 603,476 + +0.8 603,477 - +2.5 603,479 - -0.2 603,483 + -1.8 603,483 + +0.2 603,483 + -0.1 603,483 + +1.4 603,483 + -0.7 603,483 + -0.1 603,483 + -1.8 603,484 - -0.8 603,484 - -1.3 603,484 - +0.4 603,484 - +2.7 603,484 - +3.0 603,484 - +0.1 603,491 + -2.4 603,491 + +0.9 603,492 - -0.2 603,492 - +1.0 603,495 + -2.5 603,495 + +0.4 603,495 + -2.6 603,495 + -1.6 603,495 + -1.8 603,496 - +0.5 603,528 - -0.2 603,528 - +1.8 603,558 + -0.9 603,659 + -0.5 603,698 - -0.0 603,698 - -0.5 603,726 - +1.5 603,801 - +0.6 603,801 - -1.4 603,893 + +0.4 604,154 + HMPREF1078_RS02460 0.18 -1.1 604,155 - HMPREF1078_RS02460 0.18 -0.1 604,155 - HMPREF1078_RS02460 0.18 -0.6 604,155 - HMPREF1078_RS02460 0.18 -0.6 604,213 + HMPREF1078_RS02460 0.21 -0.6 604,216 - HMPREF1078_RS02460 0.21 -1.5 604,370 + HMPREF1078_RS02460 0.27 -0.1 604,370 + HMPREF1078_RS02460 0.27 +0.9 604,371 - HMPREF1078_RS02460 0.27 +0.2 604,372 + HMPREF1078_RS02460 0.27 -1.2 604,372 + HMPREF1078_RS02460 0.27 +0.5 604,373 - HMPREF1078_RS02460 0.27 -0.5 604,420 + HMPREF1078_RS02460 0.29 +1.5 604,440 - HMPREF1078_RS02460 0.29 +0.1 604,488 - HMPREF1078_RS02460 0.31 +0.6 604,520 + HMPREF1078_RS02460 0.33 +1.1 604,520 + HMPREF1078_RS02460 0.33 -1.5 604,520 + HMPREF1078_RS02460 0.33 +0.5 604,521 - HMPREF1078_RS02460 0.33 +2.0 604,583 - HMPREF1078_RS02460 0.35 +0.2 604,812 + HMPREF1078_RS02460 0.44 -1.2 604,813 - HMPREF1078_RS02460 0.44 +0.5 604,874 + HMPREF1078_RS02460 0.46 -0.8 604,875 - HMPREF1078_RS02460 0.47 +1.9 604,875 - HMPREF1078_RS02460 0.47 -1.1 604,875 - HMPREF1078_RS02460 0.47 -2.4 604,876 + HMPREF1078_RS02460 0.47 -0.1 604,910 + HMPREF1078_RS02460 0.48 +3.8 604,911 - HMPREF1078_RS02460 0.48 +1.5 604,911 - HMPREF1078_RS02460 0.48 +0.3 604,928 - HMPREF1078_RS02460 0.49 -0.5 604,928 - HMPREF1078_RS02460 0.49 -3.2 604,928 - HMPREF1078_RS02460 0.49 +0.6 605,017 + HMPREF1078_RS02460 0.52 -0.3 605,019 + HMPREF1078_RS02460 0.52 +0.5 605,025 - HMPREF1078_RS02460 0.52 +0.5 605,025 - HMPREF1078_RS02460 0.52 +0.8 605,027 + HMPREF1078_RS02460 0.52 +0.5 605,032 + HMPREF1078_RS02460 0.53 -0.8 605,032 + HMPREF1078_RS02460 0.53 +0.7 605,032 + HMPREF1078_RS02460 0.53 -0.5 605,032 + HMPREF1078_RS02460 0.53 -1.6 605,033 - HMPREF1078_RS02460 0.53 -0.6 605,033 - HMPREF1078_RS02460 0.53 -0.7 605,120 + HMPREF1078_RS02460 0.56 -1.3 605,176 - HMPREF1078_RS02460 0.58 +0.7 605,191 + HMPREF1078_RS02460 0.59 -1.1 605,192 - HMPREF1078_RS02460 0.59 -2.1 605,261 + HMPREF1078_RS02460 0.62 +1.5 605,261 + HMPREF1078_RS02460 0.62 -0.9 605,261 + HMPREF1078_RS02460 0.62 +0.4 605,348 + HMPREF1078_RS02460 0.65 +0.5 605,349 - HMPREF1078_RS02460 0.65 -1.1 605,349 - HMPREF1078_RS02460 0.65 +0.5 605,351 - HMPREF1078_RS02460 0.65 +0.9 605,353 - HMPREF1078_RS02460 0.65 -1.1 605,367 - HMPREF1078_RS02460 0.66 +0.7 605,413 + HMPREF1078_RS02460 0.68 +0.5 605,414 - HMPREF1078_RS02460 0.68 -1.5 605,428 + HMPREF1078_RS02460 0.68 -0.1 605,433 + HMPREF1078_RS02460 0.68 +0.7 605,433 + HMPREF1078_RS02460 0.68 +1.1 605,433 + HMPREF1078_RS02460 0.68 -1.8 605,433 + HMPREF1078_RS02460 0.68 +0.8 605,433 + HMPREF1078_RS02460 0.68 -1.1 605,434 - HMPREF1078_RS02460 0.68 -0.7 605,434 - HMPREF1078_RS02460 0.68 -1.4 605,434 - HMPREF1078_RS02460 0.68 -1.9 605,441 + HMPREF1078_RS02460 0.69 -0.1 605,442 - HMPREF1078_RS02460 0.69 +2.5 605,442 - HMPREF1078_RS02460 0.69 +1.9 605,444 - HMPREF1078_RS02460 0.69 -0.5 605,602 + HMPREF1078_RS02460 0.75 +0.7 605,802 - HMPREF1078_RS02460 0.83 +1.8 605,803 + HMPREF1078_RS02460 0.83 +0.4 605,804 - HMPREF1078_RS02460 0.83 +2.5 605,904 - HMPREF1078_RS02460 0.87 +0.1 605,921 + HMPREF1078_RS02460 0.88 -2.6 605,921 + HMPREF1078_RS02460 0.88 +0.4 605,921 + HMPREF1078_RS02460 0.88 -0.8 605,922 - HMPREF1078_RS02460 0.88 -2.2 605,922 - HMPREF1078_RS02460 0.88 -1.9 605,922 - HMPREF1078_RS02460 0.88 -0.7 605,923 + HMPREF1078_RS02460 0.88 +0.9 605,924 - HMPREF1078_RS02460 0.88 +2.8 605,935 + HMPREF1078_RS02460 0.88 +1.8 605,958 + HMPREF1078_RS02460 0.89 +2.5 605,958 + HMPREF1078_RS02460 0.89 -0.2 605,959 - HMPREF1078_RS02460 0.89 -1.0 605,985 + +0.5 606,012 - -2.3 606,022 - -0.5 606,164 + +0.6 606,165 - +0.3 606,165 - +0.9 606,165 - +0.0 606,187 - -0.8 606,194 + -0.6 606,195 - -0.8 606,195 - -0.6 606,208 - +0.0 606,208 - +1.2 606,275 - +0.2 606,303 - HMPREF1078_RS02465 0.11 -1.6 606,318 + HMPREF1078_RS02465 0.14 +0.5 606,380 + HMPREF1078_RS02465 0.28 -0.8 606,449 + HMPREF1078_RS02465 0.43 +2.5 606,463 - HMPREF1078_RS02465 0.46 +1.0 606,468 + HMPREF1078_RS02465 0.47 -1.6 606,469 - HMPREF1078_RS02465 0.47 +0.8 606,469 - HMPREF1078_RS02465 0.47 +0.2 606,469 - HMPREF1078_RS02465 0.47 +0.2 606,471 - HMPREF1078_RS02465 0.48 +0.2 606,471 - HMPREF1078_RS02465 0.48 -2.5 606,517 - HMPREF1078_RS02465 0.58 -0.2 606,597 - HMPREF1078_RS02465 0.75 +0.4 606,598 + HMPREF1078_RS02465 0.76 +0.3 606,598 + HMPREF1078_RS02465 0.76 +0.5 606,629 + HMPREF1078_RS02465 0.82 -1.1 606,637 + HMPREF1078_RS02465 0.84 -0.7 606,702 + +0.8 606,704 + -0.1 606,705 - +0.2 606,705 - +0.3 606,714 + -1.6 606,716 + +0.7 606,717 - +0.4 606,717 - -0.5 606,717 - +0.4 606,718 + +0.1 606,718 + +0.5 606,718 + -0.1 606,718 + +2.2 606,719 - +0.5 606,719 - +2.2 606,739 + -2.4 606,740 - +2.0 606,742 + -2.1 606,743 - +1.0 606,747 + -0.6 606,778 - -1.6 606,778 - +0.3 606,796 - +2.5 606,804 - -1.1 606,850 - -2.1 606,850 - -1.1 606,975 + +1.4 607,101 + HMPREF1078_RS02470 0.14 +1.6 607,187 - HMPREF1078_RS02470 0.17 +3.0 607,187 - HMPREF1078_RS02470 0.17 +1.0 607,212 + HMPREF1078_RS02470 0.18 +2.1 607,212 + HMPREF1078_RS02470 0.18 -0.2
Or see this region's nucleotide sequence