Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01435 and HMPREF1078_RS01440 are separated by 128 nucleotides HMPREF1078_RS01440 and HMPREF1078_RS01445 are separated by 29 nucleotides HMPREF1078_RS01445 and HMPREF1078_RS01450 are separated by 130 nucleotides
HMPREF1078_RS01435: HMPREF1078_RS01435 - hypothetical protein, at 368,597 to 369,691
_RS01435
HMPREF1078_RS01440: HMPREF1078_RS01440 - hypothetical protein, at 369,820 to 370,581
_RS01440
HMPREF1078_RS01445: HMPREF1078_RS01445 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 370,611 to 374,606
_RS01445
HMPREF1078_RS01450: HMPREF1078_RS01450 - cytochrome c biogenesis protein CcsA, at 374,737 to 377,172
_RS01450
Position (kb) 370
371
372
373
374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 369.622 kb on - strand at 369.626 kb on + strand at 369.629 kb on - strand at 369.769 kb on + strand at 369.776 kb on + strand at 369.776 kb on + strand at 369.777 kb on - strand at 369.791 kb on + strand at 369.798 kb on - strand at 369.798 kb on - strand at 369.871 kb on - strand at 369.898 kb on - strand, within HMPREF1078_RS01440 at 369.909 kb on + strand, within HMPREF1078_RS01440 at 369.978 kb on + strand, within HMPREF1078_RS01440 at 369.978 kb on + strand, within HMPREF1078_RS01440 at 369.979 kb on - strand, within HMPREF1078_RS01440 at 369.990 kb on + strand, within HMPREF1078_RS01440 at 369.990 kb on + strand, within HMPREF1078_RS01440 at 370.006 kb on - strand, within HMPREF1078_RS01440 at 370.018 kb on + strand, within HMPREF1078_RS01440 at 370.030 kb on + strand, within HMPREF1078_RS01440 at 370.031 kb on - strand, within HMPREF1078_RS01440 at 370.031 kb on - strand, within HMPREF1078_RS01440 at 370.112 kb on - strand, within HMPREF1078_RS01440 at 370.188 kb on - strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.192 kb on - strand, within HMPREF1078_RS01440 at 370.231 kb on + strand, within HMPREF1078_RS01440 at 370.245 kb on + strand, within HMPREF1078_RS01440 at 370.245 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.345 kb on + strand, within HMPREF1078_RS01440 at 370.346 kb on - strand, within HMPREF1078_RS01440 at 370.433 kb on + strand, within HMPREF1078_RS01440 at 370.433 kb on + strand, within HMPREF1078_RS01440 at 370.434 kb on - strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.509 kb on + strand at 370.531 kb on + strand at 370.531 kb on + strand at 370.532 kb on - strand at 370.532 kb on - strand at 370.532 kb on - strand at 370.578 kb on - strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.582 kb on + strand at 370.583 kb on - strand at 370.586 kb on + strand at 370.586 kb on + strand at 370.587 kb on - strand at 370.598 kb on + strand at 370.621 kb on - strand at 370.624 kb on - strand at 370.633 kb on + strand at 370.634 kb on - strand at 370.773 kb on - strand at 370.773 kb on - strand at 370.788 kb on - strand at 370.788 kb on - strand at 370.833 kb on - strand at 370.876 kb on - strand at 370.876 kb on - strand at 370.888 kb on + strand at 370.889 kb on - strand at 370.951 kb on - strand at 371.001 kb on + strand at 371.002 kb on - strand at 371.002 kb on - strand at 371.074 kb on + strand, within HMPREF1078_RS01445 at 371.074 kb on + strand, within HMPREF1078_RS01445 at 371.074 kb on + strand, within HMPREF1078_RS01445 at 371.074 kb on + strand, within HMPREF1078_RS01445 at 371.076 kb on + strand, within HMPREF1078_RS01445 at 371.094 kb on + strand, within HMPREF1078_RS01445 at 371.094 kb on + strand, within HMPREF1078_RS01445 at 371.095 kb on - strand, within HMPREF1078_RS01445 at 371.130 kb on - strand, within HMPREF1078_RS01445 at 371.209 kb on - strand, within HMPREF1078_RS01445 at 371.226 kb on - strand, within HMPREF1078_RS01445 at 371.335 kb on - strand, within HMPREF1078_RS01445 at 371.381 kb on + strand, within HMPREF1078_RS01445 at 371.390 kb on - strand, within HMPREF1078_RS01445 at 371.419 kb on + strand, within HMPREF1078_RS01445 at 371.493 kb on - strand, within HMPREF1078_RS01445 at 371.527 kb on - strand, within HMPREF1078_RS01445 at 371.527 kb on - strand, within HMPREF1078_RS01445 at 371.552 kb on - strand, within HMPREF1078_RS01445 at 371.584 kb on - strand, within HMPREF1078_RS01445 at 371.833 kb on + strand, within HMPREF1078_RS01445 at 371.834 kb on - strand, within HMPREF1078_RS01445 at 371.834 kb on - strand, within HMPREF1078_RS01445 at 371.834 kb on - strand, within HMPREF1078_RS01445 at 371.836 kb on - strand, within HMPREF1078_RS01445 at 371.851 kb on - strand, within HMPREF1078_RS01445 at 371.851 kb on - strand, within HMPREF1078_RS01445 at 371.952 kb on + strand, within HMPREF1078_RS01445 at 372.021 kb on + strand, within HMPREF1078_RS01445 at 372.029 kb on + strand, within HMPREF1078_RS01445 at 372.116 kb on + strand, within HMPREF1078_RS01445 at 372.117 kb on - strand, within HMPREF1078_RS01445 at 372.219 kb on + strand, within HMPREF1078_RS01445 at 372.220 kb on - strand, within HMPREF1078_RS01445 at 372.234 kb on + strand, within HMPREF1078_RS01445 at 372.252 kb on + strand, within HMPREF1078_RS01445 at 372.309 kb on + strand, within HMPREF1078_RS01445 at 372.437 kb on - strand, within HMPREF1078_RS01445 at 372.456 kb on - strand, within HMPREF1078_RS01445 at 372.456 kb on - strand, within HMPREF1078_RS01445 at 372.541 kb on + strand, within HMPREF1078_RS01445 at 372.542 kb on - strand, within HMPREF1078_RS01445 at 372.630 kb on + strand, within HMPREF1078_RS01445 at 372.631 kb on - strand, within HMPREF1078_RS01445 at 372.646 kb on - strand, within HMPREF1078_RS01445 at 372.646 kb on - strand, within HMPREF1078_RS01445 at 372.687 kb on + strand, within HMPREF1078_RS01445 at 372.688 kb on - strand, within HMPREF1078_RS01445 at 372.688 kb on - strand, within HMPREF1078_RS01445 at 372.690 kb on - strand, within HMPREF1078_RS01445 at 372.789 kb on + strand, within HMPREF1078_RS01445 at 372.789 kb on + strand, within HMPREF1078_RS01445 at 372.853 kb on - strand, within HMPREF1078_RS01445 at 372.864 kb on + strand, within HMPREF1078_RS01445 at 372.864 kb on + strand, within HMPREF1078_RS01445 at 372.864 kb on + strand, within HMPREF1078_RS01445 at 372.865 kb on - strand, within HMPREF1078_RS01445 at 372.865 kb on - strand, within HMPREF1078_RS01445 at 372.865 kb on - strand, within HMPREF1078_RS01445 at 372.865 kb on - strand, within HMPREF1078_RS01445 at 372.868 kb on + strand, within HMPREF1078_RS01445 at 372.869 kb on - strand, within HMPREF1078_RS01445 at 372.869 kb on - strand, within HMPREF1078_RS01445 at 372.926 kb on + strand, within HMPREF1078_RS01445 at 372.927 kb on - strand, within HMPREF1078_RS01445 at 372.986 kb on + strand, within HMPREF1078_RS01445 at 372.986 kb on + strand, within HMPREF1078_RS01445 at 372.987 kb on - strand, within HMPREF1078_RS01445 at 373.083 kb on - strand, within HMPREF1078_RS01445 at 373.294 kb on + strand, within HMPREF1078_RS01445 at 373.294 kb on + strand, within HMPREF1078_RS01445 at 373.294 kb on + strand, within HMPREF1078_RS01445 at 373.311 kb on + strand, within HMPREF1078_RS01445 at 373.329 kb on + strand, within HMPREF1078_RS01445 at 373.330 kb on - strand, within HMPREF1078_RS01445 at 373.383 kb on + strand, within HMPREF1078_RS01445 at 373.384 kb on - strand, within HMPREF1078_RS01445 at 373.472 kb on + strand, within HMPREF1078_RS01445 at 373.485 kb on + strand, within HMPREF1078_RS01445 at 373.486 kb on - strand, within HMPREF1078_RS01445 at 373.522 kb on + strand, within HMPREF1078_RS01445 at 373.522 kb on + strand, within HMPREF1078_RS01445 at 373.523 kb on - strand, within HMPREF1078_RS01445 at 373.539 kb on + strand, within HMPREF1078_RS01445 at 373.540 kb on - strand, within HMPREF1078_RS01445 at 373.587 kb on + strand, within HMPREF1078_RS01445 at 373.587 kb on + strand, within HMPREF1078_RS01445 at 373.588 kb on - strand, within HMPREF1078_RS01445 at 373.641 kb on + strand, within HMPREF1078_RS01445 at 373.854 kb on - strand, within HMPREF1078_RS01445 at 374.181 kb on + strand, within HMPREF1078_RS01445 at 374.261 kb on - strand at 374.296 kb on - strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.304 kb on + strand at 374.305 kb on - strand at 374.306 kb on + strand at 374.307 kb on - strand at 374.371 kb on - strand at 374.394 kb on + strand at 374.395 kb on - strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.440 kb on + strand at 374.440 kb on + strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.505 kb on + strand at 374.506 kb on - strand at 374.507 kb on + strand at 374.524 kb on - strand at 374.551 kb on - strand at 374.620 kb on + strand at 374.620 kb on + strand at 374.621 kb on - strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.628 kb on - strand at 374.690 kb on + strand at 374.699 kb on + strand at 374.700 kb on - strand at 374.700 kb on - strand at 374.723 kb on + strand at 374.724 kb on - strand at 374.800 kb on + strand at 374.800 kb on + strand at 374.848 kb on - strand at 374.873 kb on - strand at 374.923 kb on - strand at 375.118 kb on - strand, within HMPREF1078_RS01450 at 375.257 kb on + strand, within HMPREF1078_RS01450 at 375.362 kb on - strand, within HMPREF1078_RS01450 at 375.412 kb on - strand, within HMPREF1078_RS01450 at 375.426 kb on + strand, within HMPREF1078_RS01450 at 375.474 kb on - strand, within HMPREF1078_RS01450 at 375.515 kb on + strand, within HMPREF1078_RS01450
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 369,622 - -1.0 369,626 + -1.0 369,629 - -1.0 369,769 + -0.4 369,776 + -2.2 369,776 + -1.2 369,777 - -1.8 369,791 + +0.3 369,798 - +0.0 369,798 - +0.6 369,871 - -2.2 369,898 - HMPREF1078_RS01440 0.10 -1.0 369,909 + HMPREF1078_RS01440 0.12 +0.4 369,978 + HMPREF1078_RS01440 0.21 -1.1 369,978 + HMPREF1078_RS01440 0.21 -2.7 369,979 - HMPREF1078_RS01440 0.21 -2.2 369,990 + HMPREF1078_RS01440 0.22 -0.4 369,990 + HMPREF1078_RS01440 0.22 -0.9 370,006 - HMPREF1078_RS01440 0.24 +0.4 370,018 + HMPREF1078_RS01440 0.26 -2.2 370,030 + HMPREF1078_RS01440 0.28 +1.6 370,031 - HMPREF1078_RS01440 0.28 -2.6 370,031 - HMPREF1078_RS01440 0.28 +1.9 370,112 - HMPREF1078_RS01440 0.38 -1.8 370,188 - HMPREF1078_RS01440 0.48 +0.0 370,191 + HMPREF1078_RS01440 0.49 -0.8 370,191 + HMPREF1078_RS01440 0.49 -0.8 370,191 + HMPREF1078_RS01440 0.49 -0.7 370,192 - HMPREF1078_RS01440 0.49 -1.3 370,231 + HMPREF1078_RS01440 0.54 -1.2 370,245 + HMPREF1078_RS01440 0.56 +1.1 370,245 + HMPREF1078_RS01440 0.56 +0.0 370,249 + HMPREF1078_RS01440 0.56 -0.6 370,249 + HMPREF1078_RS01440 0.56 -1.8 370,249 + HMPREF1078_RS01440 0.56 -0.7 370,345 + HMPREF1078_RS01440 0.69 -1.2 370,346 - HMPREF1078_RS01440 0.69 -0.7 370,433 + HMPREF1078_RS01440 0.80 -1.8 370,433 + HMPREF1078_RS01440 0.80 +0.6 370,434 - HMPREF1078_RS01440 0.81 -1.2 370,442 + HMPREF1078_RS01440 0.82 +0.4 370,442 + HMPREF1078_RS01440 0.82 -1.2 370,442 + HMPREF1078_RS01440 0.82 -1.4 370,442 + HMPREF1078_RS01440 0.82 -1.3 370,442 + HMPREF1078_RS01440 0.82 -1.8 370,442 + HMPREF1078_RS01440 0.82 -0.8 370,485 + HMPREF1078_RS01440 0.87 +0.6 370,485 + HMPREF1078_RS01440 0.87 -0.4 370,485 + HMPREF1078_RS01440 0.87 -1.0 370,509 + -1.7 370,531 + -0.8 370,531 + +0.7 370,532 - -1.6 370,532 - +1.3 370,532 - -0.2 370,578 - -1.2 370,579 + +0.6 370,579 + +0.0 370,579 + -0.1 370,579 + -1.4 370,580 - +0.0 370,580 - -0.1 370,580 - -0.4 370,580 - -0.8 370,582 + -2.7 370,583 - -0.3 370,586 + -1.9 370,586 + +1.3 370,587 - -1.4 370,598 + +1.6 370,621 - -1.3 370,624 - +0.6 370,633 + +0.9 370,634 - -0.7 370,773 - +0.0 370,773 - +1.6 370,788 - +1.9 370,788 - -0.4 370,833 - -1.8 370,876 - -1.0 370,876 - -0.7 370,888 + +1.2 370,889 - -1.0 370,951 - -3.0 371,001 + -2.1 371,002 - +1.0 371,002 - -2.3 371,074 + HMPREF1078_RS01445 0.12 +0.7 371,074 + HMPREF1078_RS01445 0.12 +2.4 371,074 + HMPREF1078_RS01445 0.12 +0.4 371,074 + HMPREF1078_RS01445 0.12 -1.4 371,076 + HMPREF1078_RS01445 0.12 -1.3 371,094 + HMPREF1078_RS01445 0.12 +0.3 371,094 + HMPREF1078_RS01445 0.12 -0.9 371,095 - HMPREF1078_RS01445 0.12 -1.4 371,130 - HMPREF1078_RS01445 0.13 -1.8 371,209 - HMPREF1078_RS01445 0.15 +1.0 371,226 - HMPREF1078_RS01445 0.15 -1.0 371,335 - HMPREF1078_RS01445 0.18 -0.7 371,381 + HMPREF1078_RS01445 0.19 -0.6 371,390 - HMPREF1078_RS01445 0.19 -1.2 371,419 + HMPREF1078_RS01445 0.20 +1.5 371,493 - HMPREF1078_RS01445 0.22 -1.8 371,527 - HMPREF1078_RS01445 0.23 -1.0 371,527 - HMPREF1078_RS01445 0.23 -1.8 371,552 - HMPREF1078_RS01445 0.24 -0.1 371,584 - HMPREF1078_RS01445 0.24 -1.6 371,833 + HMPREF1078_RS01445 0.31 -2.6 371,834 - HMPREF1078_RS01445 0.31 +0.3 371,834 - HMPREF1078_RS01445 0.31 -0.2 371,834 - HMPREF1078_RS01445 0.31 +1.6 371,836 - HMPREF1078_RS01445 0.31 +0.9 371,851 - HMPREF1078_RS01445 0.31 +0.7 371,851 - HMPREF1078_RS01445 0.31 +0.1 371,952 + HMPREF1078_RS01445 0.34 -2.3 372,021 + HMPREF1078_RS01445 0.35 +0.6 372,029 + HMPREF1078_RS01445 0.35 -0.4 372,116 + HMPREF1078_RS01445 0.38 +0.3 372,117 - HMPREF1078_RS01445 0.38 +1.9 372,219 + HMPREF1078_RS01445 0.40 +0.6 372,220 - HMPREF1078_RS01445 0.40 +0.2 372,234 + HMPREF1078_RS01445 0.41 -1.7 372,252 + HMPREF1078_RS01445 0.41 -2.5 372,309 + HMPREF1078_RS01445 0.42 -0.8 372,437 - HMPREF1078_RS01445 0.46 -0.3 372,456 - HMPREF1078_RS01445 0.46 -1.4 372,456 - HMPREF1078_RS01445 0.46 +1.2 372,541 + HMPREF1078_RS01445 0.48 -0.8 372,542 - HMPREF1078_RS01445 0.48 -2.8 372,630 + HMPREF1078_RS01445 0.51 +0.0 372,631 - HMPREF1078_RS01445 0.51 -0.4 372,646 - HMPREF1078_RS01445 0.51 -1.6 372,646 - HMPREF1078_RS01445 0.51 +0.9 372,687 + HMPREF1078_RS01445 0.52 -1.2 372,688 - HMPREF1078_RS01445 0.52 +0.6 372,688 - HMPREF1078_RS01445 0.52 +0.0 372,690 - HMPREF1078_RS01445 0.52 +1.4 372,789 + HMPREF1078_RS01445 0.55 -1.0 372,789 + HMPREF1078_RS01445 0.55 +0.6 372,853 - HMPREF1078_RS01445 0.56 -1.2 372,864 + HMPREF1078_RS01445 0.56 +0.1 372,864 + HMPREF1078_RS01445 0.56 -0.4 372,864 + HMPREF1078_RS01445 0.56 -0.2 372,865 - HMPREF1078_RS01445 0.56 -2.3 372,865 - HMPREF1078_RS01445 0.56 -1.0 372,865 - HMPREF1078_RS01445 0.56 +0.8 372,865 - HMPREF1078_RS01445 0.56 +0.5 372,868 + HMPREF1078_RS01445 0.56 -0.8 372,869 - HMPREF1078_RS01445 0.57 +0.5 372,869 - HMPREF1078_RS01445 0.57 +0.6 372,926 + HMPREF1078_RS01445 0.58 +0.0 372,927 - HMPREF1078_RS01445 0.58 -0.3 372,986 + HMPREF1078_RS01445 0.59 +0.5 372,986 + HMPREF1078_RS01445 0.59 -0.4 372,987 - HMPREF1078_RS01445 0.59 +1.6 373,083 - HMPREF1078_RS01445 0.62 +0.3 373,294 + HMPREF1078_RS01445 0.67 -0.7 373,294 + HMPREF1078_RS01445 0.67 +0.6 373,294 + HMPREF1078_RS01445 0.67 +2.6 373,311 + HMPREF1078_RS01445 0.68 -0.2 373,329 + HMPREF1078_RS01445 0.68 -0.6 373,330 - HMPREF1078_RS01445 0.68 +1.8 373,383 + HMPREF1078_RS01445 0.69 +0.6 373,384 - HMPREF1078_RS01445 0.69 +0.0 373,472 + HMPREF1078_RS01445 0.72 -0.7 373,485 + HMPREF1078_RS01445 0.72 -0.4 373,486 - HMPREF1078_RS01445 0.72 -2.6 373,522 + HMPREF1078_RS01445 0.73 -0.4 373,522 + HMPREF1078_RS01445 0.73 -0.7 373,523 - HMPREF1078_RS01445 0.73 -0.6 373,539 + HMPREF1078_RS01445 0.73 -0.2 373,540 - HMPREF1078_RS01445 0.73 +0.6 373,587 + HMPREF1078_RS01445 0.74 +0.2 373,587 + HMPREF1078_RS01445 0.74 -0.6 373,588 - HMPREF1078_RS01445 0.74 -1.0 373,641 + HMPREF1078_RS01445 0.76 -1.4 373,854 - HMPREF1078_RS01445 0.81 -0.8 374,181 + HMPREF1078_RS01445 0.89 +0.9 374,261 - +0.6 374,296 - +1.2 374,301 + -0.7 374,301 + +0.5 374,304 + +0.8 374,305 - +0.6 374,306 + -1.0 374,307 - -0.7 374,371 - +0.7 374,394 + +0.6 374,395 - +0.8 374,436 + +0.0 374,436 + +1.6 374,436 + +1.4 374,440 + -0.3 374,440 + -0.0 374,441 - -2.5 374,441 - -0.9 374,441 - -0.4 374,441 - -0.4 374,505 + +0.6 374,506 - +1.3 374,507 + -2.6 374,524 - +1.0 374,551 - +0.0 374,620 + -1.1 374,620 + -0.2 374,621 - +0.4 374,627 + +0.0 374,627 + +1.3 374,627 + -1.0 374,628 - +1.2 374,690 + +1.6 374,699 + -1.2 374,700 - -1.6 374,700 - -1.2 374,723 + +0.0 374,724 - +0.6 374,800 + -1.8 374,800 + -2.9 374,848 - -2.0 374,873 - -1.0 374,923 - -3.0 375,118 - HMPREF1078_RS01450 0.16 -2.2 375,257 + HMPREF1078_RS01450 0.21 -3.9 375,362 - HMPREF1078_RS01450 0.26 -2.8 375,412 - HMPREF1078_RS01450 0.28 -0.4 375,426 + HMPREF1078_RS01450 0.28 -0.7 375,474 - HMPREF1078_RS01450 0.30 -1.9 375,515 + HMPREF1078_RS01450 0.32 +0.0
Or see this region's nucleotide sequence