Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00070 and HMPREF1078_RS00075 are separated by 5 nucleotides HMPREF1078_RS00075 and HMPREF1078_RS00080 overlap by 4 nucleotides
HMPREF1078_RS00070: HMPREF1078_RS00070 - glycosyltransferase, at 16,853 to 17,980
_RS00070
HMPREF1078_RS00075: HMPREF1078_RS00075 - glycosyltransferase, at 17,986 to 19,227
_RS00075
HMPREF1078_RS00080: HMPREF1078_RS00080 - polysaccharide deacetylase family protein, at 19,224 to 20,540
_RS00080
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.035 kb on + strand, within HMPREF1078_RS00070 at 17.066 kb on - strand, within HMPREF1078_RS00070 at 17.126 kb on - strand, within HMPREF1078_RS00070 at 17.138 kb on + strand, within HMPREF1078_RS00070 at 17.138 kb on + strand, within HMPREF1078_RS00070 at 17.154 kb on - strand, within HMPREF1078_RS00070 at 17.318 kb on - strand, within HMPREF1078_RS00070 at 17.318 kb on - strand, within HMPREF1078_RS00070 at 17.325 kb on - strand, within HMPREF1078_RS00070 at 17.334 kb on - strand, within HMPREF1078_RS00070 at 17.347 kb on - strand, within HMPREF1078_RS00070 at 17.347 kb on - strand, within HMPREF1078_RS00070 at 17.448 kb on + strand, within HMPREF1078_RS00070 at 17.449 kb on - strand, within HMPREF1078_RS00070 at 17.508 kb on + strand, within HMPREF1078_RS00070 at 17.589 kb on + strand, within HMPREF1078_RS00070 at 17.589 kb on + strand, within HMPREF1078_RS00070 at 17.656 kb on - strand, within HMPREF1078_RS00070 at 17.656 kb on - strand, within HMPREF1078_RS00070 at 17.658 kb on + strand, within HMPREF1078_RS00070 at 17.741 kb on + strand, within HMPREF1078_RS00070 at 17.741 kb on + strand, within HMPREF1078_RS00070 at 17.742 kb on - strand, within HMPREF1078_RS00070 at 17.742 kb on - strand, within HMPREF1078_RS00070 at 17.742 kb on - strand, within HMPREF1078_RS00070 at 17.747 kb on - strand, within HMPREF1078_RS00070 at 17.747 kb on - strand, within HMPREF1078_RS00070 at 17.761 kb on + strand, within HMPREF1078_RS00070 at 17.762 kb on + strand, within HMPREF1078_RS00070 at 17.762 kb on + strand, within HMPREF1078_RS00070 at 17.764 kb on + strand, within HMPREF1078_RS00070 at 17.764 kb on + strand, within HMPREF1078_RS00070 at 17.764 kb on + strand, within HMPREF1078_RS00070 at 17.764 kb on + strand, within HMPREF1078_RS00070 at 17.765 kb on - strand, within HMPREF1078_RS00070 at 17.765 kb on - strand, within HMPREF1078_RS00070 at 17.771 kb on - strand, within HMPREF1078_RS00070 at 17.771 kb on - strand, within HMPREF1078_RS00070 at 17.771 kb on - strand, within HMPREF1078_RS00070 at 17.774 kb on + strand, within HMPREF1078_RS00070 at 17.774 kb on + strand, within HMPREF1078_RS00070 at 17.774 kb on + strand, within HMPREF1078_RS00070 at 17.775 kb on - strand, within HMPREF1078_RS00070 at 17.783 kb on - strand, within HMPREF1078_RS00070 at 17.783 kb on - strand, within HMPREF1078_RS00070 at 17.793 kb on + strand, within HMPREF1078_RS00070 at 17.796 kb on + strand, within HMPREF1078_RS00070 at 17.861 kb on + strand, within HMPREF1078_RS00070 at 17.861 kb on + strand, within HMPREF1078_RS00070 at 17.862 kb on - strand, within HMPREF1078_RS00070 at 17.902 kb on + strand at 17.907 kb on + strand at 17.907 kb on + strand at 17.908 kb on - strand at 17.909 kb on + strand at 17.909 kb on + strand at 17.909 kb on + strand at 17.910 kb on - strand at 17.910 kb on - strand at 17.957 kb on + strand at 17.959 kb on + strand at 18.076 kb on + strand at 18.087 kb on - strand at 18.111 kb on - strand, within HMPREF1078_RS00075 at 18.183 kb on + strand, within HMPREF1078_RS00075 at 18.221 kb on - strand, within HMPREF1078_RS00075 at 18.264 kb on + strand, within HMPREF1078_RS00075 at 18.265 kb on - strand, within HMPREF1078_RS00075 at 18.359 kb on + strand, within HMPREF1078_RS00075 at 18.359 kb on + strand, within HMPREF1078_RS00075 at 18.376 kb on - strand, within HMPREF1078_RS00075 at 18.378 kb on - strand, within HMPREF1078_RS00075 at 18.554 kb on + strand, within HMPREF1078_RS00075 at 18.554 kb on + strand, within HMPREF1078_RS00075 at 18.637 kb on - strand, within HMPREF1078_RS00075 at 18.644 kb on + strand, within HMPREF1078_RS00075 at 18.644 kb on - strand, within HMPREF1078_RS00075 at 18.645 kb on - strand, within HMPREF1078_RS00075 at 18.645 kb on - strand, within HMPREF1078_RS00075 at 18.712 kb on - strand, within HMPREF1078_RS00075 at 18.725 kb on - strand, within HMPREF1078_RS00075 at 18.796 kb on - strand, within HMPREF1078_RS00075 at 18.796 kb on - strand, within HMPREF1078_RS00075 at 18.812 kb on + strand, within HMPREF1078_RS00075 at 18.824 kb on - strand, within HMPREF1078_RS00075 at 18.824 kb on - strand, within HMPREF1078_RS00075 at 18.869 kb on - strand, within HMPREF1078_RS00075 at 18.870 kb on + strand, within HMPREF1078_RS00075 at 18.871 kb on - strand, within HMPREF1078_RS00075 at 18.871 kb on - strand, within HMPREF1078_RS00075 at 18.871 kb on - strand, within HMPREF1078_RS00075 at 18.873 kb on - strand, within HMPREF1078_RS00075 at 18.980 kb on + strand, within HMPREF1078_RS00075 at 18.981 kb on - strand, within HMPREF1078_RS00075 at 19.006 kb on + strand, within HMPREF1078_RS00075 at 19.006 kb on + strand, within HMPREF1078_RS00075 at 19.006 kb on + strand, within HMPREF1078_RS00075 at 19.007 kb on - strand, within HMPREF1078_RS00075 at 19.012 kb on + strand, within HMPREF1078_RS00075 at 19.012 kb on + strand, within HMPREF1078_RS00075 at 19.015 kb on - strand, within HMPREF1078_RS00075 at 19.060 kb on + strand, within HMPREF1078_RS00075 at 19.061 kb on - strand, within HMPREF1078_RS00075 at 19.064 kb on + strand, within HMPREF1078_RS00075 at 19.064 kb on + strand, within HMPREF1078_RS00075 at 19.065 kb on - strand, within HMPREF1078_RS00075 at 19.065 kb on - strand, within HMPREF1078_RS00075 at 19.065 kb on - strand, within HMPREF1078_RS00075 at 19.065 kb on - strand, within HMPREF1078_RS00075 at 19.065 kb on - strand, within HMPREF1078_RS00075 at 19.112 kb on - strand at 19.156 kb on - strand at 19.165 kb on + strand at 19.166 kb on - strand at 19.203 kb on + strand at 19.203 kb on + strand at 19.210 kb on + strand at 19.211 kb on - strand at 19.211 kb on - strand at 19.211 kb on - strand at 19.213 kb on + strand at 19.219 kb on + strand at 19.219 kb on + strand at 19.220 kb on - strand at 19.319 kb on + strand at 19.381 kb on + strand, within HMPREF1078_RS00080 at 19.381 kb on + strand, within HMPREF1078_RS00080 at 19.412 kb on + strand, within HMPREF1078_RS00080 at 19.414 kb on + strand, within HMPREF1078_RS00080 at 19.415 kb on - strand, within HMPREF1078_RS00080 at 19.464 kb on - strand, within HMPREF1078_RS00080 at 19.476 kb on - strand, within HMPREF1078_RS00080 at 19.568 kb on + strand, within HMPREF1078_RS00080 at 19.569 kb on - strand, within HMPREF1078_RS00080 at 19.571 kb on + strand, within HMPREF1078_RS00080 at 19.572 kb on - strand, within HMPREF1078_RS00080 at 19.572 kb on - strand, within HMPREF1078_RS00080 at 19.590 kb on + strand, within HMPREF1078_RS00080 at 19.590 kb on + strand, within HMPREF1078_RS00080 at 19.590 kb on + strand, within HMPREF1078_RS00080 at 19.591 kb on - strand, within HMPREF1078_RS00080 at 19.591 kb on - strand, within HMPREF1078_RS00080 at 19.591 kb on - strand, within HMPREF1078_RS00080 at 19.595 kb on + strand, within HMPREF1078_RS00080 at 19.595 kb on + strand, within HMPREF1078_RS00080 at 19.595 kb on + strand, within HMPREF1078_RS00080 at 19.595 kb on + strand, within HMPREF1078_RS00080 at 19.595 kb on + strand, within HMPREF1078_RS00080 at 19.596 kb on - strand, within HMPREF1078_RS00080 at 19.596 kb on - strand, within HMPREF1078_RS00080 at 19.596 kb on - strand, within HMPREF1078_RS00080 at 19.596 kb on - strand, within HMPREF1078_RS00080 at 19.622 kb on - strand, within HMPREF1078_RS00080 at 19.622 kb on - strand, within HMPREF1078_RS00080 at 19.622 kb on - strand, within HMPREF1078_RS00080 at 19.636 kb on + strand, within HMPREF1078_RS00080 at 19.637 kb on - strand, within HMPREF1078_RS00080 at 19.715 kb on - strand, within HMPREF1078_RS00080 at 19.738 kb on - strand, within HMPREF1078_RS00080 at 19.794 kb on - strand, within HMPREF1078_RS00080 at 19.810 kb on + strand, within HMPREF1078_RS00080 at 19.879 kb on - strand, within HMPREF1078_RS00080 at 19.915 kb on + strand, within HMPREF1078_RS00080 at 19.915 kb on + strand, within HMPREF1078_RS00080 at 19.980 kb on - strand, within HMPREF1078_RS00080 at 20.031 kb on + strand, within HMPREF1078_RS00080 at 20.031 kb on + strand, within HMPREF1078_RS00080 at 20.059 kb on - strand, within HMPREF1078_RS00080 at 20.088 kb on + strand, within HMPREF1078_RS00080 at 20.088 kb on + strand, within HMPREF1078_RS00080 at 20.128 kb on + strand, within HMPREF1078_RS00080 at 20.212 kb on - strand, within HMPREF1078_RS00080
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 17,035 + HMPREF1078_RS00070 0.16 -1.0 17,066 - HMPREF1078_RS00070 0.19 -3.2 17,126 - HMPREF1078_RS00070 0.24 -2.9 17,138 + HMPREF1078_RS00070 0.25 -3.2 17,138 + HMPREF1078_RS00070 0.25 -2.0 17,154 - HMPREF1078_RS00070 0.27 -2.3 17,318 - HMPREF1078_RS00070 0.41 -1.3 17,318 - HMPREF1078_RS00070 0.41 -2.0 17,325 - HMPREF1078_RS00070 0.42 -2.0 17,334 - HMPREF1078_RS00070 0.43 -2.1 17,347 - HMPREF1078_RS00070 0.44 -3.2 17,347 - HMPREF1078_RS00070 0.44 -2.8 17,448 + HMPREF1078_RS00070 0.53 -3.1 17,449 - HMPREF1078_RS00070 0.53 -0.7 17,508 + HMPREF1078_RS00070 0.58 -0.3 17,589 + HMPREF1078_RS00070 0.65 +0.9 17,589 + HMPREF1078_RS00070 0.65 -0.7 17,656 - HMPREF1078_RS00070 0.71 -2.5 17,656 - HMPREF1078_RS00070 0.71 -1.7 17,658 + HMPREF1078_RS00070 0.71 +1.6 17,741 + HMPREF1078_RS00070 0.79 -0.4 17,741 + HMPREF1078_RS00070 0.79 -3.1 17,742 - HMPREF1078_RS00070 0.79 -1.4 17,742 - HMPREF1078_RS00070 0.79 -1.3 17,742 - HMPREF1078_RS00070 0.79 -0.9 17,747 - HMPREF1078_RS00070 0.79 +0.6 17,747 - HMPREF1078_RS00070 0.79 +0.5 17,761 + HMPREF1078_RS00070 0.80 -2.9 17,762 + HMPREF1078_RS00070 0.81 -2.0 17,762 + HMPREF1078_RS00070 0.81 -0.8 17,764 + HMPREF1078_RS00070 0.81 -1.6 17,764 + HMPREF1078_RS00070 0.81 -2.3 17,764 + HMPREF1078_RS00070 0.81 -1.6 17,764 + HMPREF1078_RS00070 0.81 -1.3 17,765 - HMPREF1078_RS00070 0.81 -1.0 17,765 - HMPREF1078_RS00070 0.81 -0.7 17,771 - HMPREF1078_RS00070 0.81 -1.6 17,771 - HMPREF1078_RS00070 0.81 -2.4 17,771 - HMPREF1078_RS00070 0.81 -0.9 17,774 + HMPREF1078_RS00070 0.82 +0.0 17,774 + HMPREF1078_RS00070 0.82 -2.5 17,774 + HMPREF1078_RS00070 0.82 -1.1 17,775 - HMPREF1078_RS00070 0.82 -2.2 17,783 - HMPREF1078_RS00070 0.82 -3.2 17,783 - HMPREF1078_RS00070 0.82 -1.2 17,793 + HMPREF1078_RS00070 0.83 -0.6 17,796 + HMPREF1078_RS00070 0.84 -1.4 17,861 + HMPREF1078_RS00070 0.89 -1.1 17,861 + HMPREF1078_RS00070 0.89 -2.0 17,862 - HMPREF1078_RS00070 0.89 -1.9 17,902 + -1.7 17,907 + -2.3 17,907 + -4.2 17,908 - -2.7 17,909 + -4.2 17,909 + -1.7 17,909 + -3.6 17,910 - -1.2 17,910 - -3.3 17,957 + -1.4 17,959 + -1.6 18,076 + -0.9 18,087 - -3.8 18,111 - HMPREF1078_RS00075 0.10 -1.6 18,183 + HMPREF1078_RS00075 0.16 -1.7 18,221 - HMPREF1078_RS00075 0.19 -1.7 18,264 + HMPREF1078_RS00075 0.22 +0.0 18,265 - HMPREF1078_RS00075 0.22 -1.7 18,359 + HMPREF1078_RS00075 0.30 -1.0 18,359 + HMPREF1078_RS00075 0.30 -2.3 18,376 - HMPREF1078_RS00075 0.31 +0.8 18,378 - HMPREF1078_RS00075 0.32 -2.6 18,554 + HMPREF1078_RS00075 0.46 -1.0 18,554 + HMPREF1078_RS00075 0.46 +0.0 18,637 - HMPREF1078_RS00075 0.52 -1.4 18,644 + HMPREF1078_RS00075 0.53 -2.2 18,644 - HMPREF1078_RS00075 0.53 -1.2 18,645 - HMPREF1078_RS00075 0.53 -1.2 18,645 - HMPREF1078_RS00075 0.53 -1.4 18,712 - HMPREF1078_RS00075 0.58 -3.3 18,725 - HMPREF1078_RS00075 0.60 -2.9 18,796 - HMPREF1078_RS00075 0.65 -2.4 18,796 - HMPREF1078_RS00075 0.65 +2.6 18,812 + HMPREF1078_RS00075 0.67 +0.6 18,824 - HMPREF1078_RS00075 0.67 -0.6 18,824 - HMPREF1078_RS00075 0.67 -1.7 18,869 - HMPREF1078_RS00075 0.71 -0.4 18,870 + HMPREF1078_RS00075 0.71 +1.6 18,871 - HMPREF1078_RS00075 0.71 -2.5 18,871 - HMPREF1078_RS00075 0.71 -1.5 18,871 - HMPREF1078_RS00075 0.71 -3.6 18,873 - HMPREF1078_RS00075 0.71 -1.2 18,980 + HMPREF1078_RS00075 0.80 -4.6 18,981 - HMPREF1078_RS00075 0.80 -1.7 19,006 + HMPREF1078_RS00075 0.82 +1.6 19,006 + HMPREF1078_RS00075 0.82 -2.0 19,006 + HMPREF1078_RS00075 0.82 +1.6 19,007 - HMPREF1078_RS00075 0.82 -0.4 19,012 + HMPREF1078_RS00075 0.83 -1.0 19,012 + HMPREF1078_RS00075 0.83 -1.7 19,015 - HMPREF1078_RS00075 0.83 -4.6 19,060 + HMPREF1078_RS00075 0.86 -3.3 19,061 - HMPREF1078_RS00075 0.87 -3.0 19,064 + HMPREF1078_RS00075 0.87 -1.2 19,064 + HMPREF1078_RS00075 0.87 -1.9 19,065 - HMPREF1078_RS00075 0.87 -2.3 19,065 - HMPREF1078_RS00075 0.87 -1.7 19,065 - HMPREF1078_RS00075 0.87 -3.3 19,065 - HMPREF1078_RS00075 0.87 -1.5 19,065 - HMPREF1078_RS00075 0.87 -2.7 19,112 - +0.0 19,156 - -3.3 19,165 + -2.7 19,166 - +0.0 19,203 + -0.9 19,203 + -1.0 19,210 + -2.9 19,211 - -1.0 19,211 - -0.7 19,211 - -1.3 19,213 + -3.2 19,219 + -1.2 19,219 + -3.3 19,220 - -2.7 19,319 + -1.7 19,381 + HMPREF1078_RS00080 0.12 -0.7 19,381 + HMPREF1078_RS00080 0.12 -1.0 19,412 + HMPREF1078_RS00080 0.14 -1.0 19,414 + HMPREF1078_RS00080 0.14 -2.3 19,415 - HMPREF1078_RS00080 0.15 -2.2 19,464 - HMPREF1078_RS00080 0.18 -0.7 19,476 - HMPREF1078_RS00080 0.19 -3.1 19,568 + HMPREF1078_RS00080 0.26 +0.6 19,569 - HMPREF1078_RS00080 0.26 -1.3 19,571 + HMPREF1078_RS00080 0.26 -3.3 19,572 - HMPREF1078_RS00080 0.26 -4.2 19,572 - HMPREF1078_RS00080 0.26 -1.5 19,590 + HMPREF1078_RS00080 0.28 -3.6 19,590 + HMPREF1078_RS00080 0.28 -1.6 19,590 + HMPREF1078_RS00080 0.28 +0.5 19,591 - HMPREF1078_RS00080 0.28 -1.9 19,591 - HMPREF1078_RS00080 0.28 -3.3 19,591 - HMPREF1078_RS00080 0.28 -1.2 19,595 + HMPREF1078_RS00080 0.28 -1.7 19,595 + HMPREF1078_RS00080 0.28 -3.0 19,595 + HMPREF1078_RS00080 0.28 +0.0 19,595 + HMPREF1078_RS00080 0.28 -2.2 19,595 + HMPREF1078_RS00080 0.28 -1.7 19,596 - HMPREF1078_RS00080 0.28 -2.3 19,596 - HMPREF1078_RS00080 0.28 -2.2 19,596 - HMPREF1078_RS00080 0.28 -2.5 19,596 - HMPREF1078_RS00080 0.28 -2.7 19,622 - HMPREF1078_RS00080 0.30 -1.1 19,622 - HMPREF1078_RS00080 0.30 -4.5 19,622 - HMPREF1078_RS00080 0.30 -2.6 19,636 + HMPREF1078_RS00080 0.31 +0.0 19,637 - HMPREF1078_RS00080 0.31 -1.0 19,715 - HMPREF1078_RS00080 0.37 -2.2 19,738 - HMPREF1078_RS00080 0.39 -3.2 19,794 - HMPREF1078_RS00080 0.43 -3.7 19,810 + HMPREF1078_RS00080 0.44 -1.2 19,879 - HMPREF1078_RS00080 0.50 -1.7 19,915 + HMPREF1078_RS00080 0.52 -1.6 19,915 + HMPREF1078_RS00080 0.52 -2.4 19,980 - HMPREF1078_RS00080 0.57 -3.8 20,031 + HMPREF1078_RS00080 0.61 -3.4 20,031 + HMPREF1078_RS00080 0.61 -1.0 20,059 - HMPREF1078_RS00080 0.63 -2.4 20,088 + HMPREF1078_RS00080 0.66 -1.1 20,088 + HMPREF1078_RS00080 0.66 -0.7 20,128 + HMPREF1078_RS00080 0.69 -3.1 20,212 - HMPREF1078_RS00080 0.75 -1.4
Or see this region's nucleotide sequence