Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14540 and HMPREF1078_RS14545 are separated by 312 nucleotides HMPREF1078_RS14545 and HMPREF1078_RS14550 are separated by 8 nucleotides HMPREF1078_RS14550 and HMPREF1078_RS14555 are separated by 7 nucleotides
HMPREF1078_RS14540: HMPREF1078_RS14540 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 408,269 to 409,369
_RS14540
HMPREF1078_RS14545: HMPREF1078_RS14545 - adenylyltransferase/cytidyltransferase family protein, at 409,682 to 410,152
_RS14545
HMPREF1078_RS14550: HMPREF1078_RS14550 - SDR family oxidoreductase, at 410,161 to 410,889
_RS14550
HMPREF1078_RS14555: HMPREF1078_RS14555 - CDP-alcohol phosphatidyltransferase family protein, at 410,897 to 411,784
_RS14555
Position (kb) 409
410
411 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 408.752 kb on - strand, within HMPREF1078_RS14540 at 408.752 kb on - strand, within HMPREF1078_RS14540 at 408.781 kb on + strand, within HMPREF1078_RS14540 at 408.781 kb on + strand, within HMPREF1078_RS14540 at 408.781 kb on + strand, within HMPREF1078_RS14540 at 408.781 kb on + strand, within HMPREF1078_RS14540 at 408.782 kb on - strand, within HMPREF1078_RS14540 at 408.824 kb on - strand, within HMPREF1078_RS14540 at 408.824 kb on - strand, within HMPREF1078_RS14540 at 408.859 kb on + strand, within HMPREF1078_RS14540 at 408.859 kb on + strand, within HMPREF1078_RS14540 at 408.889 kb on + strand, within HMPREF1078_RS14540 at 408.891 kb on + strand, within HMPREF1078_RS14540 at 408.891 kb on + strand, within HMPREF1078_RS14540 at 408.891 kb on + strand, within HMPREF1078_RS14540 at 408.891 kb on + strand, within HMPREF1078_RS14540 at 408.892 kb on - strand, within HMPREF1078_RS14540 at 408.936 kb on + strand, within HMPREF1078_RS14540 at 408.941 kb on - strand, within HMPREF1078_RS14540 at 408.941 kb on - strand, within HMPREF1078_RS14540 at 408.961 kb on + strand, within HMPREF1078_RS14540 at 408.962 kb on - strand, within HMPREF1078_RS14540 at 408.996 kb on + strand, within HMPREF1078_RS14540 at 408.996 kb on + strand, within HMPREF1078_RS14540 at 408.996 kb on + strand, within HMPREF1078_RS14540 at 408.996 kb on + strand, within HMPREF1078_RS14540 at 408.996 kb on + strand, within HMPREF1078_RS14540 at 408.997 kb on - strand, within HMPREF1078_RS14540 at 408.997 kb on - strand, within HMPREF1078_RS14540 at 409.013 kb on + strand, within HMPREF1078_RS14540 at 409.014 kb on - strand, within HMPREF1078_RS14540 at 409.014 kb on - strand, within HMPREF1078_RS14540 at 409.014 kb on - strand, within HMPREF1078_RS14540 at 409.047 kb on - strand, within HMPREF1078_RS14540 at 409.073 kb on - strand, within HMPREF1078_RS14540 at 409.076 kb on + strand, within HMPREF1078_RS14540 at 409.076 kb on + strand, within HMPREF1078_RS14540 at 409.076 kb on + strand, within HMPREF1078_RS14540 at 409.076 kb on + strand, within HMPREF1078_RS14540 at 409.077 kb on - strand, within HMPREF1078_RS14540 at 409.077 kb on - strand, within HMPREF1078_RS14540 at 409.102 kb on + strand, within HMPREF1078_RS14540 at 409.129 kb on + strand, within HMPREF1078_RS14540 at 409.133 kb on + strand, within HMPREF1078_RS14540 at 409.134 kb on - strand, within HMPREF1078_RS14540 at 409.134 kb on - strand, within HMPREF1078_RS14540 at 409.134 kb on - strand, within HMPREF1078_RS14540 at 409.146 kb on + strand, within HMPREF1078_RS14540 at 409.147 kb on - strand, within HMPREF1078_RS14540 at 409.156 kb on - strand, within HMPREF1078_RS14540 at 409.156 kb on - strand, within HMPREF1078_RS14540 at 409.184 kb on + strand, within HMPREF1078_RS14540 at 409.184 kb on + strand, within HMPREF1078_RS14540 at 409.184 kb on + strand, within HMPREF1078_RS14540 at 409.185 kb on - strand, within HMPREF1078_RS14540 at 409.185 kb on - strand, within HMPREF1078_RS14540 at 409.189 kb on + strand, within HMPREF1078_RS14540 at 409.190 kb on - strand, within HMPREF1078_RS14540 at 409.236 kb on + strand, within HMPREF1078_RS14540 at 409.236 kb on + strand, within HMPREF1078_RS14540 at 409.236 kb on + strand, within HMPREF1078_RS14540 at 409.237 kb on - strand, within HMPREF1078_RS14540 at 409.237 kb on - strand, within HMPREF1078_RS14540 at 409.238 kb on + strand, within HMPREF1078_RS14540 at 409.239 kb on - strand, within HMPREF1078_RS14540 at 409.239 kb on - strand, within HMPREF1078_RS14540 at 409.310 kb on + strand at 409.311 kb on - strand at 409.395 kb on - strand at 409.468 kb on - strand at 409.478 kb on + strand at 409.479 kb on - strand at 409.513 kb on - strand at 409.535 kb on + strand at 409.540 kb on + strand at 409.545 kb on - strand at 409.545 kb on - strand at 409.548 kb on + strand at 409.549 kb on - strand at 409.549 kb on - strand at 409.549 kb on - strand at 409.550 kb on + strand at 409.552 kb on + strand at 409.649 kb on + strand at 409.674 kb on + strand at 409.674 kb on + strand at 409.678 kb on + strand at 409.706 kb on + strand at 409.706 kb on + strand at 409.708 kb on + strand at 409.709 kb on - strand at 409.726 kb on + strand at 409.726 kb on + strand at 409.726 kb on + strand at 409.726 kb on + strand at 409.756 kb on - strand, within HMPREF1078_RS14545 at 409.801 kb on + strand, within HMPREF1078_RS14545 at 409.823 kb on + strand, within HMPREF1078_RS14545 at 409.849 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.909 kb on + strand, within HMPREF1078_RS14545 at 409.910 kb on - strand, within HMPREF1078_RS14545 at 409.910 kb on - strand, within HMPREF1078_RS14545 at 409.910 kb on - strand, within HMPREF1078_RS14545 at 409.985 kb on + strand, within HMPREF1078_RS14545 at 409.985 kb on + strand, within HMPREF1078_RS14545 at 409.985 kb on + strand, within HMPREF1078_RS14545 at 409.985 kb on + strand, within HMPREF1078_RS14545 at 409.992 kb on - strand, within HMPREF1078_RS14545 at 410.081 kb on + strand, within HMPREF1078_RS14545 at 410.081 kb on + strand, within HMPREF1078_RS14545 at 410.081 kb on + strand, within HMPREF1078_RS14545 at 410.081 kb on + strand, within HMPREF1078_RS14545 at 410.082 kb on - strand, within HMPREF1078_RS14545 at 410.082 kb on - strand, within HMPREF1078_RS14545 at 410.150 kb on + strand at 410.150 kb on + strand at 410.150 kb on + strand at 410.201 kb on + strand at 410.239 kb on + strand, within HMPREF1078_RS14550 at 410.239 kb on + strand, within HMPREF1078_RS14550 at 410.257 kb on + strand, within HMPREF1078_RS14550 at 410.257 kb on + strand, within HMPREF1078_RS14550 at 410.257 kb on + strand, within HMPREF1078_RS14550 at 410.311 kb on + strand, within HMPREF1078_RS14550 at 410.312 kb on - strand, within HMPREF1078_RS14550 at 410.329 kb on - strand, within HMPREF1078_RS14550 at 410.329 kb on - strand, within HMPREF1078_RS14550 at 410.372 kb on + strand, within HMPREF1078_RS14550 at 410.398 kb on - strand, within HMPREF1078_RS14550 at 410.398 kb on - strand, within HMPREF1078_RS14550 at 410.465 kb on + strand, within HMPREF1078_RS14550 at 410.465 kb on + strand, within HMPREF1078_RS14550 at 410.466 kb on - strand, within HMPREF1078_RS14550 at 410.466 kb on - strand, within HMPREF1078_RS14550 at 410.468 kb on + strand, within HMPREF1078_RS14550 at 410.468 kb on + strand, within HMPREF1078_RS14550 at 410.468 kb on + strand, within HMPREF1078_RS14550 at 410.468 kb on + strand, within HMPREF1078_RS14550 at 410.541 kb on + strand, within HMPREF1078_RS14550 at 410.545 kb on - strand, within HMPREF1078_RS14550 at 410.611 kb on + strand, within HMPREF1078_RS14550 at 410.652 kb on + strand, within HMPREF1078_RS14550 at 410.674 kb on + strand, within HMPREF1078_RS14550 at 410.754 kb on + strand, within HMPREF1078_RS14550 at 410.755 kb on - strand, within HMPREF1078_RS14550 at 410.757 kb on + strand, within HMPREF1078_RS14550 at 410.759 kb on + strand, within HMPREF1078_RS14550 at 410.760 kb on - strand, within HMPREF1078_RS14550 at 410.825 kb on + strand at 410.839 kb on + strand at 410.840 kb on - strand at 410.884 kb on - strand at 410.887 kb on + strand at 410.887 kb on + strand at 410.887 kb on + strand at 410.895 kb on - strand at 410.918 kb on + strand at 410.918 kb on + strand at 410.918 kb on + strand at 410.973 kb on - strand at 411.001 kb on + strand, within HMPREF1078_RS14555 at 411.001 kb on + strand, within HMPREF1078_RS14555 at 411.002 kb on - strand, within HMPREF1078_RS14555 at 411.019 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.023 kb on - strand, within HMPREF1078_RS14555 at 411.023 kb on - strand, within HMPREF1078_RS14555 at 411.031 kb on + strand, within HMPREF1078_RS14555 at 411.031 kb on + strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.130 kb on - strand, within HMPREF1078_RS14555
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 408,752 - HMPREF1078_RS14540 0.44 -0.5 408,752 - HMPREF1078_RS14540 0.44 -1.6 408,781 + HMPREF1078_RS14540 0.47 -1.7 408,781 + HMPREF1078_RS14540 0.47 -2.1 408,781 + HMPREF1078_RS14540 0.47 -1.1 408,781 + HMPREF1078_RS14540 0.47 -1.1 408,782 - HMPREF1078_RS14540 0.47 -0.5 408,824 - HMPREF1078_RS14540 0.50 -1.5 408,824 - HMPREF1078_RS14540 0.50 +0.5 408,859 + HMPREF1078_RS14540 0.54 -1.4 408,859 + HMPREF1078_RS14540 0.54 -3.2 408,889 + HMPREF1078_RS14540 0.56 -3.4 408,891 + HMPREF1078_RS14540 0.56 -1.1 408,891 + HMPREF1078_RS14540 0.56 -1.3 408,891 + HMPREF1078_RS14540 0.56 -2.6 408,891 + HMPREF1078_RS14540 0.56 -3.0 408,892 - HMPREF1078_RS14540 0.57 -2.6 408,936 + HMPREF1078_RS14540 0.61 -3.5 408,941 - HMPREF1078_RS14540 0.61 -1.8 408,941 - HMPREF1078_RS14540 0.61 -2.3 408,961 + HMPREF1078_RS14540 0.63 -2.8 408,962 - HMPREF1078_RS14540 0.63 +0.5 408,996 + HMPREF1078_RS14540 0.66 -2.6 408,996 + HMPREF1078_RS14540 0.66 -2.1 408,996 + HMPREF1078_RS14540 0.66 +0.0 408,996 + HMPREF1078_RS14540 0.66 -0.6 408,996 + HMPREF1078_RS14540 0.66 -2.4 408,997 - HMPREF1078_RS14540 0.66 -3.5 408,997 - HMPREF1078_RS14540 0.66 -1.6 409,013 + HMPREF1078_RS14540 0.68 -1.8 409,014 - HMPREF1078_RS14540 0.68 -2.5 409,014 - HMPREF1078_RS14540 0.68 -1.5 409,014 - HMPREF1078_RS14540 0.68 -3.9 409,047 - HMPREF1078_RS14540 0.71 -1.8 409,073 - HMPREF1078_RS14540 0.73 -0.1 409,076 + HMPREF1078_RS14540 0.73 -2.5 409,076 + HMPREF1078_RS14540 0.73 -2.7 409,076 + HMPREF1078_RS14540 0.73 -1.8 409,076 + HMPREF1078_RS14540 0.73 -1.9 409,077 - HMPREF1078_RS14540 0.73 -1.1 409,077 - HMPREF1078_RS14540 0.73 -1.3 409,102 + HMPREF1078_RS14540 0.76 -3.2 409,129 + HMPREF1078_RS14540 0.78 -3.2 409,133 + HMPREF1078_RS14540 0.78 -2.4 409,134 - HMPREF1078_RS14540 0.79 -1.1 409,134 - HMPREF1078_RS14540 0.79 -3.4 409,134 - HMPREF1078_RS14540 0.79 -2.2 409,146 + HMPREF1078_RS14540 0.80 -3.5 409,147 - HMPREF1078_RS14540 0.80 -1.5 409,156 - HMPREF1078_RS14540 0.81 -3.4 409,156 - HMPREF1078_RS14540 0.81 -1.6 409,184 + HMPREF1078_RS14540 0.83 -1.5 409,184 + HMPREF1078_RS14540 0.83 -2.6 409,184 + HMPREF1078_RS14540 0.83 -3.1 409,185 - HMPREF1078_RS14540 0.83 -3.4 409,185 - HMPREF1078_RS14540 0.83 -3.9 409,189 + HMPREF1078_RS14540 0.84 -1.3 409,190 - HMPREF1078_RS14540 0.84 -2.9 409,236 + HMPREF1078_RS14540 0.88 -1.3 409,236 + HMPREF1078_RS14540 0.88 -0.8 409,236 + HMPREF1078_RS14540 0.88 +1.5 409,237 - HMPREF1078_RS14540 0.88 -1.7 409,237 - HMPREF1078_RS14540 0.88 -2.2 409,238 + HMPREF1078_RS14540 0.88 +1.5 409,239 - HMPREF1078_RS14540 0.88 -2.4 409,239 - HMPREF1078_RS14540 0.88 -0.1 409,310 + -0.9 409,311 - -1.6 409,395 - -1.2 409,468 - -0.6 409,478 + -0.3 409,479 - +0.5 409,513 - -0.4 409,535 + -1.2 409,540 + +0.5 409,545 - -3.8 409,545 - -0.5 409,548 + -1.7 409,549 - -0.8 409,549 - +0.7 409,549 - -0.8 409,550 + -1.4 409,552 + -0.2 409,649 + -0.6 409,674 + -0.8 409,674 + -1.5 409,678 + -2.9 409,706 + -1.1 409,706 + +1.5 409,708 + -1.9 409,709 - +0.5 409,726 + -2.2 409,726 + -2.5 409,726 + -2.6 409,726 + -0.5 409,756 - HMPREF1078_RS14545 0.16 +1.5 409,801 + HMPREF1078_RS14545 0.25 -2.4 409,823 + HMPREF1078_RS14545 0.30 -1.9 409,849 + HMPREF1078_RS14545 0.35 -2.7 409,909 + HMPREF1078_RS14545 0.48 -1.8 409,909 + HMPREF1078_RS14545 0.48 -0.8 409,909 + HMPREF1078_RS14545 0.48 -1.5 409,909 + HMPREF1078_RS14545 0.48 -1.6 409,909 + HMPREF1078_RS14545 0.48 -1.8 409,909 + HMPREF1078_RS14545 0.48 -0.8 409,910 - HMPREF1078_RS14545 0.48 +0.5 409,910 - HMPREF1078_RS14545 0.48 +1.5 409,910 - HMPREF1078_RS14545 0.48 -1.3 409,985 + HMPREF1078_RS14545 0.64 -0.5 409,985 + HMPREF1078_RS14545 0.64 +1.5 409,985 + HMPREF1078_RS14545 0.64 +0.5 409,985 + HMPREF1078_RS14545 0.64 -2.1 409,992 - HMPREF1078_RS14545 0.66 -0.8 410,081 + HMPREF1078_RS14545 0.85 -2.1 410,081 + HMPREF1078_RS14545 0.85 -1.8 410,081 + HMPREF1078_RS14545 0.85 -1.1 410,081 + HMPREF1078_RS14545 0.85 -2.4 410,082 - HMPREF1078_RS14545 0.85 +0.5 410,082 - HMPREF1078_RS14545 0.85 -0.1 410,150 + -1.6 410,150 + +0.2 410,150 + +1.1 410,201 + -2.7 410,239 + HMPREF1078_RS14550 0.11 -3.6 410,239 + HMPREF1078_RS14550 0.11 -1.3 410,257 + HMPREF1078_RS14550 0.13 -1.6 410,257 + HMPREF1078_RS14550 0.13 -1.5 410,257 + HMPREF1078_RS14550 0.13 -1.6 410,311 + HMPREF1078_RS14550 0.21 -1.1 410,312 - HMPREF1078_RS14550 0.21 +0.5 410,329 - HMPREF1078_RS14550 0.23 -0.5 410,329 - HMPREF1078_RS14550 0.23 +0.5 410,372 + HMPREF1078_RS14550 0.29 -3.8 410,398 - HMPREF1078_RS14550 0.33 +0.5 410,398 - HMPREF1078_RS14550 0.33 -2.2 410,465 + HMPREF1078_RS14550 0.42 -0.1 410,465 + HMPREF1078_RS14550 0.42 -1.3 410,466 - HMPREF1078_RS14550 0.42 +0.5 410,466 - HMPREF1078_RS14550 0.42 -1.9 410,468 + HMPREF1078_RS14550 0.42 -0.4 410,468 + HMPREF1078_RS14550 0.42 -2.5 410,468 + HMPREF1078_RS14550 0.42 -0.9 410,468 + HMPREF1078_RS14550 0.42 -2.3 410,541 + HMPREF1078_RS14550 0.52 +1.0 410,545 - HMPREF1078_RS14550 0.53 -0.1 410,611 + HMPREF1078_RS14550 0.62 -1.2 410,652 + HMPREF1078_RS14550 0.67 -0.5 410,674 + HMPREF1078_RS14550 0.70 -2.6 410,754 + HMPREF1078_RS14550 0.81 -2.2 410,755 - HMPREF1078_RS14550 0.81 -0.8 410,757 + HMPREF1078_RS14550 0.82 -0.5 410,759 + HMPREF1078_RS14550 0.82 +0.4 410,760 - HMPREF1078_RS14550 0.82 +0.5 410,825 + -1.1 410,839 + -0.9 410,840 - -2.3 410,884 - -1.5 410,887 + -1.5 410,887 + -0.1 410,887 + -1.1 410,895 - -0.8 410,918 + -1.6 410,918 + -1.8 410,918 + -0.8 410,973 - +1.5 411,001 + HMPREF1078_RS14555 0.12 -1.5 411,001 + HMPREF1078_RS14555 0.12 -1.3 411,002 - HMPREF1078_RS14555 0.12 -0.5 411,019 + HMPREF1078_RS14555 0.14 -2.2 411,022 + HMPREF1078_RS14555 0.14 -1.5 411,022 + HMPREF1078_RS14555 0.14 -1.1 411,022 + HMPREF1078_RS14555 0.14 -0.5 411,023 - HMPREF1078_RS14555 0.14 -0.5 411,023 - HMPREF1078_RS14555 0.14 +0.5 411,031 + HMPREF1078_RS14555 0.15 +0.5 411,031 + HMPREF1078_RS14555 0.15 -1.8 411,032 - HMPREF1078_RS14555 0.15 -0.1 411,032 - HMPREF1078_RS14555 0.15 -1.1 411,032 - HMPREF1078_RS14555 0.15 -0.1 411,130 - HMPREF1078_RS14555 0.26 -0.8
Or see this region's nucleotide sequence