Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07000 and HMPREF1078_RS07005 are separated by 51 nucleotides HMPREF1078_RS07005 and HMPREF1078_RS07010 are separated by 115 nucleotides
HMPREF1078_RS07000: HMPREF1078_RS07000 - FAD-dependent oxidoreductase, at 809,871 to 812,873
_RS07000
HMPREF1078_RS07005: HMPREF1078_RS07005 - FAD-dependent oxidoreductase, at 812,925 to 814,925
_RS07005
HMPREF1078_RS07010: HMPREF1078_RS07010 - RagB/SusD family nutrient uptake outer membrane protein, at 815,041 to 816,879
_RS07010
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 811.926 kb on + strand, within HMPREF1078_RS07000 at 812.003 kb on - strand, within HMPREF1078_RS07000 at 812.070 kb on + strand, within HMPREF1078_RS07000 at 812.122 kb on + strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.143 kb on - strand, within HMPREF1078_RS07000 at 812.153 kb on + strand, within HMPREF1078_RS07000 at 812.154 kb on - strand, within HMPREF1078_RS07000 at 812.154 kb on - strand, within HMPREF1078_RS07000 at 812.253 kb on + strand, within HMPREF1078_RS07000 at 812.259 kb on - strand, within HMPREF1078_RS07000 at 812.261 kb on - strand, within HMPREF1078_RS07000 at 812.294 kb on + strand, within HMPREF1078_RS07000 at 812.311 kb on - strand, within HMPREF1078_RS07000 at 812.436 kb on + strand, within HMPREF1078_RS07000 at 812.436 kb on + strand, within HMPREF1078_RS07000 at 812.440 kb on + strand, within HMPREF1078_RS07000 at 812.441 kb on - strand, within HMPREF1078_RS07000 at 812.441 kb on - strand, within HMPREF1078_RS07000 at 812.460 kb on + strand, within HMPREF1078_RS07000 at 812.500 kb on - strand, within HMPREF1078_RS07000 at 812.501 kb on + strand, within HMPREF1078_RS07000 at 812.585 kb on - strand at 812.601 kb on + strand at 812.602 kb on - strand at 812.624 kb on + strand at 812.624 kb on + strand at 812.624 kb on + strand at 812.625 kb on - strand at 812.625 kb on - strand at 812.626 kb on + strand at 812.716 kb on - strand at 812.739 kb on - strand at 812.814 kb on + strand at 812.868 kb on - strand at 812.868 kb on - strand at 812.877 kb on - strand at 812.877 kb on - strand at 812.877 kb on - strand at 812.910 kb on - strand at 812.940 kb on + strand at 812.940 kb on + strand at 812.941 kb on - strand at 812.945 kb on + strand at 812.949 kb on - strand at 812.996 kb on + strand at 813.028 kb on + strand at 813.028 kb on + strand at 813.028 kb on + strand at 813.029 kb on - strand at 813.037 kb on - strand at 813.078 kb on + strand at 813.079 kb on - strand at 813.079 kb on - strand at 813.079 kb on - strand at 813.158 kb on - strand, within HMPREF1078_RS07005 at 813.173 kb on - strand, within HMPREF1078_RS07005 at 813.176 kb on + strand, within HMPREF1078_RS07005 at 813.254 kb on + strand, within HMPREF1078_RS07005 at 813.325 kb on - strand, within HMPREF1078_RS07005 at 813.387 kb on + strand, within HMPREF1078_RS07005 at 813.500 kb on + strand, within HMPREF1078_RS07005 at 813.500 kb on + strand, within HMPREF1078_RS07005 at 813.519 kb on + strand, within HMPREF1078_RS07005 at 813.520 kb on - strand, within HMPREF1078_RS07005 at 813.536 kb on + strand, within HMPREF1078_RS07005 at 813.561 kb on - strand, within HMPREF1078_RS07005 at 813.601 kb on + strand, within HMPREF1078_RS07005 at 813.625 kb on - strand, within HMPREF1078_RS07005 at 813.644 kb on + strand, within HMPREF1078_RS07005 at 813.657 kb on - strand, within HMPREF1078_RS07005 at 813.737 kb on + strand, within HMPREF1078_RS07005 at 813.740 kb on - strand, within HMPREF1078_RS07005 at 813.772 kb on + strand, within HMPREF1078_RS07005 at 813.772 kb on + strand, within HMPREF1078_RS07005 at 813.773 kb on - strand, within HMPREF1078_RS07005 at 813.901 kb on + strand, within HMPREF1078_RS07005 at 813.901 kb on + strand, within HMPREF1078_RS07005 at 813.906 kb on + strand, within HMPREF1078_RS07005 at 813.907 kb on - strand, within HMPREF1078_RS07005 at 813.907 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.977 kb on + strand, within HMPREF1078_RS07005 at 813.987 kb on + strand, within HMPREF1078_RS07005 at 814.012 kb on + strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.020 kb on - strand, within HMPREF1078_RS07005 at 814.032 kb on - strand, within HMPREF1078_RS07005 at 814.040 kb on + strand, within HMPREF1078_RS07005 at 814.044 kb on + strand, within HMPREF1078_RS07005 at 814.052 kb on - strand, within HMPREF1078_RS07005 at 814.055 kb on + strand, within HMPREF1078_RS07005 at 814.055 kb on + strand, within HMPREF1078_RS07005 at 814.056 kb on - strand, within HMPREF1078_RS07005 at 814.056 kb on - strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.095 kb on + strand, within HMPREF1078_RS07005 at 814.102 kb on + strand, within HMPREF1078_RS07005 at 814.102 kb on + strand, within HMPREF1078_RS07005 at 814.117 kb on + strand, within HMPREF1078_RS07005 at 814.184 kb on - strand, within HMPREF1078_RS07005 at 814.191 kb on + strand, within HMPREF1078_RS07005 at 814.191 kb on + strand, within HMPREF1078_RS07005 at 814.229 kb on + strand, within HMPREF1078_RS07005 at 814.229 kb on + strand, within HMPREF1078_RS07005 at 814.275 kb on + strand, within HMPREF1078_RS07005 at 814.279 kb on + strand, within HMPREF1078_RS07005 at 814.279 kb on + strand, within HMPREF1078_RS07005 at 814.411 kb on + strand, within HMPREF1078_RS07005 at 814.411 kb on + strand, within HMPREF1078_RS07005 at 814.412 kb on - strand, within HMPREF1078_RS07005 at 814.446 kb on + strand, within HMPREF1078_RS07005 at 814.446 kb on + strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.537 kb on + strand, within HMPREF1078_RS07005 at 814.540 kb on + strand, within HMPREF1078_RS07005 at 814.541 kb on - strand, within HMPREF1078_RS07005 at 814.552 kb on - strand, within HMPREF1078_RS07005 at 814.629 kb on - strand, within HMPREF1078_RS07005 at 814.630 kb on + strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.681 kb on + strand, within HMPREF1078_RS07005 at 814.718 kb on + strand, within HMPREF1078_RS07005 at 814.719 kb on - strand, within HMPREF1078_RS07005 at 814.719 kb on - strand, within HMPREF1078_RS07005 at 814.724 kb on + strand, within HMPREF1078_RS07005 at 814.731 kb on + strand at 814.767 kb on - strand at 814.794 kb on + strand at 814.794 kb on + strand at 814.819 kb on + strand at 814.853 kb on + strand at 814.884 kb on + strand at 814.892 kb on + strand at 814.902 kb on - strand at 814.912 kb on - strand at 814.917 kb on - strand at 814.934 kb on + strand at 815.145 kb on + strand at 815.146 kb on - strand at 815.146 kb on - strand at 815.151 kb on + strand at 815.152 kb on - strand at 815.152 kb on - strand at 815.152 kb on - strand at 815.153 kb on + strand at 815.153 kb on + strand at 815.154 kb on - strand at 815.169 kb on + strand at 815.225 kb on + strand, within HMPREF1078_RS07010 at 815.226 kb on - strand, within HMPREF1078_RS07010 at 815.257 kb on + strand, within HMPREF1078_RS07010 at 815.258 kb on - strand, within HMPREF1078_RS07010 at 815.345 kb on + strand, within HMPREF1078_RS07010 at 815.346 kb on - strand, within HMPREF1078_RS07010 at 815.346 kb on - strand, within HMPREF1078_RS07010 at 815.480 kb on - strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.560 kb on - strand, within HMPREF1078_RS07010 at 815.560 kb on - strand, within HMPREF1078_RS07010 at 815.591 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.621 kb on + strand, within HMPREF1078_RS07010 at 815.651 kb on + strand, within HMPREF1078_RS07010 at 815.652 kb on - strand, within HMPREF1078_RS07010 at 815.708 kb on + strand, within HMPREF1078_RS07010 at 815.709 kb on - strand, within HMPREF1078_RS07010 at 815.774 kb on + strand, within HMPREF1078_RS07010 at 815.774 kb on + strand, within HMPREF1078_RS07010 at 815.775 kb on - strand, within HMPREF1078_RS07010 at 815.776 kb on + strand, within HMPREF1078_RS07010 at 815.781 kb on + strand, within HMPREF1078_RS07010 at 815.816 kb on - strand, within HMPREF1078_RS07010 at 815.816 kb on - strand, within HMPREF1078_RS07010 at 815.825 kb on + strand, within HMPREF1078_RS07010 at 815.826 kb on - strand, within HMPREF1078_RS07010 at 815.883 kb on - strand, within HMPREF1078_RS07010 at 815.883 kb on - strand, within HMPREF1078_RS07010 at 815.894 kb on + strand, within HMPREF1078_RS07010
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 811,926 + HMPREF1078_RS07000 0.68 -2.4 812,003 - HMPREF1078_RS07000 0.71 +1.0 812,070 + HMPREF1078_RS07000 0.73 -1.2 812,122 + HMPREF1078_RS07000 0.75 -0.9 812,123 - HMPREF1078_RS07000 0.75 -0.3 812,123 - HMPREF1078_RS07000 0.75 +0.4 812,123 - HMPREF1078_RS07000 0.75 -0.2 812,143 - HMPREF1078_RS07000 0.76 +0.7 812,153 + HMPREF1078_RS07000 0.76 +0.4 812,154 - HMPREF1078_RS07000 0.76 -0.4 812,154 - HMPREF1078_RS07000 0.76 +0.5 812,253 + HMPREF1078_RS07000 0.79 -0.6 812,259 - HMPREF1078_RS07000 0.80 -1.8 812,261 - HMPREF1078_RS07000 0.80 +0.9 812,294 + HMPREF1078_RS07000 0.81 +0.0 812,311 - HMPREF1078_RS07000 0.81 +0.4 812,436 + HMPREF1078_RS07000 0.85 +1.8 812,436 + HMPREF1078_RS07000 0.85 -2.5 812,440 + HMPREF1078_RS07000 0.86 +1.2 812,441 - HMPREF1078_RS07000 0.86 +0.9 812,441 - HMPREF1078_RS07000 0.86 -1.9 812,460 + HMPREF1078_RS07000 0.86 -0.1 812,500 - HMPREF1078_RS07000 0.88 +0.2 812,501 + HMPREF1078_RS07000 0.88 +0.1 812,585 - -0.6 812,601 + +0.2 812,602 - +0.3 812,624 + -1.9 812,624 + -0.7 812,624 + +1.8 812,625 - -0.3 812,625 - -1.3 812,626 + +2.4 812,716 - -1.4 812,739 - -0.0 812,814 + +0.2 812,868 - -0.7 812,868 - -1.9 812,877 - +0.6 812,877 - -1.2 812,877 - -0.7 812,910 - -0.6 812,940 + +0.4 812,940 + +0.4 812,941 - -0.4 812,945 + +3.0 812,949 - -0.2 812,996 + -0.7 813,028 + +0.4 813,028 + -0.9 813,028 + -1.8 813,029 - -1.4 813,037 - -0.6 813,078 + -0.8 813,079 - -0.5 813,079 - -1.1 813,079 - -1.8 813,158 - HMPREF1078_RS07005 0.12 -0.4 813,173 - HMPREF1078_RS07005 0.12 +1.1 813,176 + HMPREF1078_RS07005 0.13 -1.3 813,254 + HMPREF1078_RS07005 0.16 -0.2 813,325 - HMPREF1078_RS07005 0.20 +3.0 813,387 + HMPREF1078_RS07005 0.23 +0.4 813,500 + HMPREF1078_RS07005 0.29 -1.2 813,500 + HMPREF1078_RS07005 0.29 +1.4 813,519 + HMPREF1078_RS07005 0.30 +0.4 813,520 - HMPREF1078_RS07005 0.30 -0.8 813,536 + HMPREF1078_RS07005 0.31 -0.0 813,561 - HMPREF1078_RS07005 0.32 -0.7 813,601 + HMPREF1078_RS07005 0.34 +1.1 813,625 - HMPREF1078_RS07005 0.35 -2.9 813,644 + HMPREF1078_RS07005 0.36 -0.3 813,657 - HMPREF1078_RS07005 0.37 -1.0 813,737 + HMPREF1078_RS07005 0.41 +0.2 813,740 - HMPREF1078_RS07005 0.41 +2.0 813,772 + HMPREF1078_RS07005 0.42 -0.2 813,772 + HMPREF1078_RS07005 0.42 -0.8 813,773 - HMPREF1078_RS07005 0.42 -1.4 813,901 + HMPREF1078_RS07005 0.49 +1.3 813,901 + HMPREF1078_RS07005 0.49 -2.2 813,906 + HMPREF1078_RS07005 0.49 -1.9 813,907 - HMPREF1078_RS07005 0.49 -1.6 813,907 - HMPREF1078_RS07005 0.49 -0.1 813,941 - HMPREF1078_RS07005 0.51 -0.2 813,941 - HMPREF1078_RS07005 0.51 -0.4 813,941 - HMPREF1078_RS07005 0.51 -2.1 813,977 + HMPREF1078_RS07005 0.53 +0.1 813,987 + HMPREF1078_RS07005 0.53 -0.3 814,012 + HMPREF1078_RS07005 0.54 -1.4 814,017 - HMPREF1078_RS07005 0.55 -1.2 814,017 - HMPREF1078_RS07005 0.55 +1.0 814,017 - HMPREF1078_RS07005 0.55 -1.9 814,017 - HMPREF1078_RS07005 0.55 -0.7 814,020 - HMPREF1078_RS07005 0.55 -0.9 814,032 - HMPREF1078_RS07005 0.55 +0.4 814,040 + HMPREF1078_RS07005 0.56 -1.4 814,044 + HMPREF1078_RS07005 0.56 -2.4 814,052 - HMPREF1078_RS07005 0.56 -1.3 814,055 + HMPREF1078_RS07005 0.56 +0.8 814,055 + HMPREF1078_RS07005 0.56 -1.2 814,056 - HMPREF1078_RS07005 0.57 -0.7 814,056 - HMPREF1078_RS07005 0.57 +0.8 814,059 + HMPREF1078_RS07005 0.57 +0.1 814,059 + HMPREF1078_RS07005 0.57 +0.7 814,059 + HMPREF1078_RS07005 0.57 -0.5 814,095 + HMPREF1078_RS07005 0.58 -0.8 814,102 + HMPREF1078_RS07005 0.59 -1.4 814,102 + HMPREF1078_RS07005 0.59 -0.2 814,117 + HMPREF1078_RS07005 0.60 +0.6 814,184 - HMPREF1078_RS07005 0.63 -2.5 814,191 + HMPREF1078_RS07005 0.63 +1.4 814,191 + HMPREF1078_RS07005 0.63 +0.2 814,229 + HMPREF1078_RS07005 0.65 -0.6 814,229 + HMPREF1078_RS07005 0.65 -1.2 814,275 + HMPREF1078_RS07005 0.67 -0.9 814,279 + HMPREF1078_RS07005 0.68 +1.3 814,279 + HMPREF1078_RS07005 0.68 -0.7 814,411 + HMPREF1078_RS07005 0.74 -1.9 814,411 + HMPREF1078_RS07005 0.74 -0.3 814,412 - HMPREF1078_RS07005 0.74 -0.9 814,446 + HMPREF1078_RS07005 0.76 -1.1 814,446 + HMPREF1078_RS07005 0.76 -1.8 814,447 - HMPREF1078_RS07005 0.76 -0.9 814,447 - HMPREF1078_RS07005 0.76 -0.9 814,447 - HMPREF1078_RS07005 0.76 -1.2 814,537 + HMPREF1078_RS07005 0.81 -2.2 814,540 + HMPREF1078_RS07005 0.81 -1.9 814,541 - HMPREF1078_RS07005 0.81 +0.6 814,552 - HMPREF1078_RS07005 0.81 +0.4 814,629 - HMPREF1078_RS07005 0.85 -1.4 814,630 + HMPREF1078_RS07005 0.85 +1.6 814,631 - HMPREF1078_RS07005 0.85 -0.5 814,631 - HMPREF1078_RS07005 0.85 -3.0 814,631 - HMPREF1078_RS07005 0.85 +2.2 814,681 + HMPREF1078_RS07005 0.88 +0.4 814,718 + HMPREF1078_RS07005 0.90 +1.1 814,719 - HMPREF1078_RS07005 0.90 +1.1 814,719 - HMPREF1078_RS07005 0.90 +1.0 814,724 + HMPREF1078_RS07005 0.90 -1.2 814,731 + -1.8 814,767 - +1.4 814,794 + -0.3 814,794 + +3.0 814,819 + +0.0 814,853 + +0.8 814,884 + -1.9 814,892 + -0.3 814,902 - -0.0 814,912 - +0.6 814,917 - -1.2 814,934 + +0.4 815,145 + -1.2 815,146 - +1.0 815,146 - -3.7 815,151 + +0.1 815,152 - -0.2 815,152 - -0.5 815,152 - -0.3 815,153 + +0.2 815,153 + +3.4 815,154 - -0.6 815,169 + -0.4 815,225 + HMPREF1078_RS07010 0.10 +0.4 815,226 - HMPREF1078_RS07010 0.10 -1.0 815,257 + HMPREF1078_RS07010 0.12 -1.2 815,258 - HMPREF1078_RS07010 0.12 +1.4 815,345 + HMPREF1078_RS07010 0.17 -1.8 815,346 - HMPREF1078_RS07010 0.17 -1.3 815,346 - HMPREF1078_RS07010 0.17 -0.8 815,480 - HMPREF1078_RS07010 0.24 +0.8 815,559 + HMPREF1078_RS07010 0.28 -0.2 815,559 + HMPREF1078_RS07010 0.28 -0.2 815,559 + HMPREF1078_RS07010 0.28 -0.4 815,559 + HMPREF1078_RS07010 0.28 +0.1 815,560 - HMPREF1078_RS07010 0.28 -1.8 815,560 - HMPREF1078_RS07010 0.28 -0.2 815,591 + HMPREF1078_RS07010 0.30 +1.6 815,617 + HMPREF1078_RS07010 0.31 -1.9 815,617 + HMPREF1078_RS07010 0.31 -0.7 815,617 + HMPREF1078_RS07010 0.31 -1.3 815,617 + HMPREF1078_RS07010 0.31 -1.6 815,617 + HMPREF1078_RS07010 0.31 +0.4 815,618 - HMPREF1078_RS07010 0.31 +1.9 815,618 - HMPREF1078_RS07010 0.31 +0.3 815,618 - HMPREF1078_RS07010 0.31 -0.7 815,618 - HMPREF1078_RS07010 0.31 +0.4 815,621 + HMPREF1078_RS07010 0.32 +0.7 815,651 + HMPREF1078_RS07010 0.33 +0.2 815,652 - HMPREF1078_RS07010 0.33 -0.3 815,708 + HMPREF1078_RS07010 0.36 -1.3 815,709 - HMPREF1078_RS07010 0.36 +0.9 815,774 + HMPREF1078_RS07010 0.40 +1.1 815,774 + HMPREF1078_RS07010 0.40 -0.2 815,775 - HMPREF1078_RS07010 0.40 +0.5 815,776 + HMPREF1078_RS07010 0.40 +1.4 815,781 + HMPREF1078_RS07010 0.40 -1.8 815,816 - HMPREF1078_RS07010 0.42 -0.4 815,816 - HMPREF1078_RS07010 0.42 +0.7 815,825 + HMPREF1078_RS07010 0.43 -3.2 815,826 - HMPREF1078_RS07010 0.43 +0.6 815,883 - HMPREF1078_RS07010 0.46 -0.2 815,883 - HMPREF1078_RS07010 0.46 -1.8 815,894 + HMPREF1078_RS07010 0.46 -0.5
Or see this region's nucleotide sequence