Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04535

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
139,044	+		HMPREF1078_RS04525	0.76	+1.5
139,045	-		HMPREF1078_RS04525	0.77	+0.7
139,045	-		HMPREF1078_RS04525	0.77	-0.8
139,046	+		HMPREF1078_RS04525	0.77	-0.0
139,046	+		HMPREF1078_RS04525	0.77	+1.5
139,046	+		HMPREF1078_RS04525	0.77	-1.0
139,046	+		HMPREF1078_RS04525	0.77	+0.6
139,046	+		HMPREF1078_RS04525	0.77	+0.6
139,046	+		HMPREF1078_RS04525	0.77	-0.6
139,047	-		HMPREF1078_RS04525	0.77	-0.1
139,047	-		HMPREF1078_RS04525	0.77	-2.1
139,047	-		HMPREF1078_RS04525	0.77	-1.1
139,047	-		HMPREF1078_RS04525	0.77	-0.5
139,047	-		HMPREF1078_RS04525	0.77	+1.2
139,047	-		HMPREF1078_RS04525	0.77	+0.8
139,047	-		HMPREF1078_RS04525	0.77	-2.0
139,048	+		HMPREF1078_RS04525	0.77	+0.7
139,048	+		HMPREF1078_RS04525	0.77	+0.0
139,048	+		HMPREF1078_RS04525	0.77	-1.5
139,048	+		HMPREF1078_RS04525	0.77	-1.5
139,048	+		HMPREF1078_RS04525	0.77	-1.7
139,048	+		HMPREF1078_RS04525	0.77	-0.1
139,049	-		HMPREF1078_RS04525	0.77	+0.5
139,115	-		HMPREF1078_RS04525	0.89	-0.8
139,190	+				-2.4
139,190	+				-0.4
139,190	+				-0.4
139,190	+				-1.7
139,191	-				-0.1
139,191	-				-1.2
139,191	-				-1.0
139,191	-				-0.3
139,194	-				+0.4
139,194	-				-0.6
139,194	-				-0.1
139,194	-				+0.3
139,203	-				-0.9
139,224	+		HMPREF1078_RS04530	0.11	+0.3
139,279	+		HMPREF1078_RS04530	0.21	+0.5
139,279	+		HMPREF1078_RS04530	0.21	+2.7
139,284	+		HMPREF1078_RS04530	0.22	-1.5
139,284	+		HMPREF1078_RS04530	0.22	-0.8
139,284	+		HMPREF1078_RS04530	0.22	-2.1
139,300	-		HMPREF1078_RS04530	0.25	-1.8
139,414	-		HMPREF1078_RS04530	0.46	-1.6
139,414	-		HMPREF1078_RS04530	0.46	+0.5
139,458	+		HMPREF1078_RS04530	0.54	-0.5
139,471	+		HMPREF1078_RS04530	0.56	-0.1
139,481	+		HMPREF1078_RS04530	0.58	-1.0
139,481	+		HMPREF1078_RS04530	0.58	-1.5
139,597	+		HMPREF1078_RS04530	0.79	+0.8
139,692	-				+1.2
139,692	-				-1.1
139,714	+				-1.1
139,716	+				-0.1
139,716	+				+1.1
139,717	-				-2.4
139,718	+				-0.1
139,718	+				-0.1
139,719	-				-0.6
139,719	-				-0.3
139,721	-				+0.5
139,801	+				+0.1
139,801	+				-0.5
139,824	-				+3.5
139,832	-				-0.5
139,851	-				-1.3
139,895	-				+0.3
139,915	-				+1.2
139,915	-				+1.5
139,931	-				+1.1
139,940	+				+1.4
139,940	+				+0.6
139,950	-				-1.7
140,054	+		HMPREF1078_RS04535	0.17	-0.5
140,121	-		HMPREF1078_RS04535	0.26	+0.3
140,140	+		HMPREF1078_RS04535	0.29	+2.3
140,163	+		HMPREF1078_RS04535	0.32	+0.2
140,197	+		HMPREF1078_RS04535	0.36	-0.5
140,213	-		HMPREF1078_RS04535	0.39	-0.3
140,213	-		HMPREF1078_RS04535	0.39	+0.5
140,228	+		HMPREF1078_RS04535	0.41	+0.2
140,228	+		HMPREF1078_RS04535	0.41	+0.4
140,228	+		HMPREF1078_RS04535	0.41	+0.5
140,229	-		HMPREF1078_RS04535	0.41	-0.9
140,229	-		HMPREF1078_RS04535	0.41	-1.3
140,229	-		HMPREF1078_RS04535	0.41	+0.4
140,229	-		HMPREF1078_RS04535	0.41	-0.5
140,229	-		HMPREF1078_RS04535	0.41	+2.1
140,229	-		HMPREF1078_RS04535	0.41	+1.5
140,229	-		HMPREF1078_RS04535	0.41	-0.8
140,229	-		HMPREF1078_RS04535	0.41	+1.7
140,229	-		HMPREF1078_RS04535	0.41	+1.6
140,230	+		HMPREF1078_RS04535	0.41	-0.5
140,230	+		HMPREF1078_RS04535	0.41	+0.9
140,231	-		HMPREF1078_RS04535	0.41	+0.7
140,259	-		HMPREF1078_RS04535	0.45	-0.4
140,291	+		HMPREF1078_RS04535	0.49	+2.2
140,291	+		HMPREF1078_RS04535	0.49	+2.5
140,303	-		HMPREF1078_RS04535	0.51	+0.9
140,303	-		HMPREF1078_RS04535	0.51	+1.7
140,367	+		HMPREF1078_RS04535	0.60	+0.8
140,417	+		HMPREF1078_RS04535	0.66	-0.3
140,417	+		HMPREF1078_RS04535	0.66	-1.4
140,417	+		HMPREF1078_RS04535	0.66	-1.5
140,417	+		HMPREF1078_RS04535	0.66	+0.5
140,418	-		HMPREF1078_RS04535	0.67	-1.5
140,418	-		HMPREF1078_RS04535	0.67	-1.0
140,418	-		HMPREF1078_RS04535	0.67	+0.2
140,418	-		HMPREF1078_RS04535	0.67	+0.3
140,418	-		HMPREF1078_RS04535	0.67	-1.0
140,418	-		HMPREF1078_RS04535	0.67	+1.2
140,418	-		HMPREF1078_RS04535	0.67	+1.3
140,418	-		HMPREF1078_RS04535	0.67	-0.5
140,419	+		HMPREF1078_RS04535	0.67	+1.7
140,419	+		HMPREF1078_RS04535	0.67	+0.1
140,420	-		HMPREF1078_RS04535	0.67	-1.1
140,420	-		HMPREF1078_RS04535	0.67	+1.0
140,420	-		HMPREF1078_RS04535	0.67	+1.1
140,420	-		HMPREF1078_RS04535	0.67	+2.5
140,421	+		HMPREF1078_RS04535	0.67	-2.7
140,421	+		HMPREF1078_RS04535	0.67	+1.0
140,421	+		HMPREF1078_RS04535	0.67	+2.4
140,422	-		HMPREF1078_RS04535	0.67	-0.5
140,422	-		HMPREF1078_RS04535	0.67	-1.1
140,423	+		HMPREF1078_RS04535	0.67	+0.5
140,423	+		HMPREF1078_RS04535	0.67	-0.4
140,424	-		HMPREF1078_RS04535	0.67	-0.2
140,462	-		HMPREF1078_RS04535	0.73	+1.1
140,462	-		HMPREF1078_RS04535	0.73	-1.7
140,487	-		HMPREF1078_RS04535	0.76	+0.2
140,504	+		HMPREF1078_RS04535	0.78	+1.8
140,504	+		HMPREF1078_RS04535	0.78	-4.1
140,504	+		HMPREF1078_RS04535	0.78	+2.1
140,504	+		HMPREF1078_RS04535	0.78	+0.6
140,505	-		HMPREF1078_RS04535	0.78	+0.5
140,505	-		HMPREF1078_RS04535	0.78	+0.9
140,506	+		HMPREF1078_RS04535	0.79	-1.6
140,506	+		HMPREF1078_RS04535	0.79	-2.5
140,506	+		HMPREF1078_RS04535	0.79	-1.8
140,506	+		HMPREF1078_RS04535	0.79	+0.1
140,507	-		HMPREF1078_RS04535	0.79	+2.3
140,507	-		HMPREF1078_RS04535	0.79	-0.1
140,510	-		HMPREF1078_RS04535	0.79	-1.9
140,510	-		HMPREF1078_RS04535	0.79	-0.5
140,516	+		HMPREF1078_RS04535	0.80	-1.1
140,517	-		HMPREF1078_RS04535	0.80	+1.0
140,532	+		HMPREF1078_RS04535	0.82	+2.1
140,538	+		HMPREF1078_RS04535	0.83	+0.7
140,539	-		HMPREF1078_RS04535	0.83	-0.2
140,555	+		HMPREF1078_RS04535	0.85	+2.2
140,555	+		HMPREF1078_RS04535	0.85	-0.5
140,556	-		HMPREF1078_RS04535	0.85	+1.4
140,556	-		HMPREF1078_RS04535	0.85	+1.8
140,575	+		HMPREF1078_RS04535	0.88	-0.8
140,576	-		HMPREF1078_RS04535	0.88	+0.0
140,613	-				+0.3
140,620	-				+1.0
140,637	+				-0.3
140,637	+				+0.5
140,643	-				+1.3
140,643	-				+1.1
140,663	+				+0.7
140,664	-				+0.5
140,664	-				-0.1
140,664	-				+1.5
140,670	+				-0.5
140,670	+				-0.1
140,670	+				-1.3
140,671	-				+3.1
140,671	-				+0.7
140,671	-				+1.5
140,674	-				+0.3
140,675	-				-0.8
140,741	+				+1.8