Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides HMPREF1078_RS04485 and HMPREF1078_RS04490 are separated by 126 nucleotides HMPREF1078_RS04490 and HMPREF1078_RS04495 are separated by 283 nucleotides
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
HMPREF1078_RS04495: HMPREF1078_RS04495 - cytochrome d ubiquinol oxidase subunit II, at 131,740 to 132,894
_RS04495
Position (kb) 130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.270 kb on + strand, within HMPREF1078_RS04485 at 130.271 kb on - strand, within HMPREF1078_RS04485 at 130.401 kb on - strand at 130.415 kb on + strand at 130.416 kb on - strand at 130.418 kb on - strand at 130.418 kb on - strand at 130.436 kb on - strand at 130.464 kb on + strand at 130.478 kb on + strand at 130.631 kb on - strand at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490 at 131.282 kb on + strand, within HMPREF1078_RS04490 at 131.355 kb on - strand, within HMPREF1078_RS04490 at 131.356 kb on + strand, within HMPREF1078_RS04490 at 131.433 kb on + strand at 131.433 kb on + strand at 131.434 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.481 kb on + strand at 131.482 kb on - strand at 131.490 kb on + strand at 131.558 kb on - strand at 131.558 kb on - strand at 131.565 kb on - strand at 131.567 kb on - strand at 131.583 kb on + strand at 131.592 kb on + strand at 131.606 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.638 kb on + strand at 131.660 kb on + strand at 131.675 kb on + strand at 131.744 kb on + strand at 131.821 kb on - strand at 131.855 kb on + strand at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.932 kb on - strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.940 kb on - strand, within HMPREF1078_RS04495 at 131.946 kb on + strand, within HMPREF1078_RS04495 at 132.030 kb on + strand, within HMPREF1078_RS04495 at 132.060 kb on - strand, within HMPREF1078_RS04495 at 132.124 kb on - strand, within HMPREF1078_RS04495 at 132.128 kb on + strand, within HMPREF1078_RS04495 at 132.133 kb on - strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.145 kb on - strand, within HMPREF1078_RS04495 at 132.146 kb on + strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 129,581 + HMPREF1078_RS04475 0.73 +0.3 129,584 - HMPREF1078_RS04475 0.74 +1.5 129,584 - HMPREF1078_RS04475 0.74 +1.5 129,699 + +2.9 129,962 + HMPREF1078_RS04480 0.66 +1.7 129,962 + HMPREF1078_RS04480 0.66 +3.1 129,962 + HMPREF1078_RS04480 0.66 +1.0 129,962 + HMPREF1078_RS04480 0.66 -1.2 129,963 - HMPREF1078_RS04480 0.67 +0.3 129,963 - HMPREF1078_RS04480 0.67 -1.2 129,963 - HMPREF1078_RS04480 0.67 -2.2 129,964 + HMPREF1078_RS04480 0.67 +1.3 129,965 - HMPREF1078_RS04480 0.67 +0.5 129,965 - HMPREF1078_RS04480 0.67 +0.2 130,046 + -1.3 130,132 + HMPREF1078_RS04485 0.14 -0.9 130,132 + HMPREF1078_RS04485 0.14 -0.5 130,133 - HMPREF1078_RS04485 0.14 -3.0 130,133 - HMPREF1078_RS04485 0.14 -0.1 130,133 - HMPREF1078_RS04485 0.14 -2.7 130,133 - HMPREF1078_RS04485 0.14 -3.3 130,133 - HMPREF1078_RS04485 0.14 -3.4 130,135 + HMPREF1078_RS04485 0.15 +0.2 130,135 + HMPREF1078_RS04485 0.15 -0.5 130,157 + HMPREF1078_RS04485 0.22 -1.3 130,157 + HMPREF1078_RS04485 0.22 -0.5 130,157 + HMPREF1078_RS04485 0.22 +2.1 130,158 - HMPREF1078_RS04485 0.22 -3.3 130,158 - HMPREF1078_RS04485 0.22 -4.0 130,158 - HMPREF1078_RS04485 0.22 -2.6 130,206 + HMPREF1078_RS04485 0.36 -0.6 130,206 + HMPREF1078_RS04485 0.36 -1.1 130,270 + HMPREF1078_RS04485 0.56 -2.9 130,271 - HMPREF1078_RS04485 0.56 +0.0 130,401 - -2.0 130,415 + -0.1 130,416 - -2.4 130,418 - +1.5 130,418 - -1.3 130,436 - -0.8 130,464 + -0.1 130,478 + -0.7 130,631 - -0.4 130,810 + HMPREF1078_RS04490 0.29 +1.7 130,811 - HMPREF1078_RS04490 0.29 -3.0 130,811 - HMPREF1078_RS04490 0.29 +0.3 130,904 - HMPREF1078_RS04490 0.40 +1.5 130,904 - HMPREF1078_RS04490 0.40 +0.1 130,922 + HMPREF1078_RS04490 0.42 -0.5 130,922 + HMPREF1078_RS04490 0.42 +0.9 130,923 - HMPREF1078_RS04490 0.42 +0.2 130,977 - HMPREF1078_RS04490 0.48 -2.2 131,009 - HMPREF1078_RS04490 0.51 +0.8 131,282 + HMPREF1078_RS04490 0.81 -0.1 131,355 - HMPREF1078_RS04490 0.89 -2.0 131,356 + HMPREF1078_RS04490 0.89 -0.2 131,433 + -1.8 131,433 + -0.5 131,434 - +0.0 131,440 - -1.5 131,440 - +1.2 131,440 - -0.0 131,481 + -0.3 131,482 - -1.7 131,490 + -2.1 131,558 - -1.2 131,558 - +0.3 131,565 - -0.7 131,567 - -0.1 131,583 + +0.2 131,592 + +0.2 131,606 - -2.4 131,632 - -1.3 131,632 - -0.6 131,632 - -0.2 131,638 + -0.2 131,660 + -0.0 131,675 + +0.5 131,744 + +0.3 131,821 - -2.2 131,855 + -0.8 131,856 - HMPREF1078_RS04495 0.10 -2.1 131,856 - HMPREF1078_RS04495 0.10 -0.9 131,856 - HMPREF1078_RS04495 0.10 -0.9 131,856 - HMPREF1078_RS04495 0.10 -0.6 131,932 - HMPREF1078_RS04495 0.17 +1.5 131,939 + HMPREF1078_RS04495 0.17 -2.5 131,939 + HMPREF1078_RS04495 0.17 -0.6 131,940 - HMPREF1078_RS04495 0.17 +0.4 131,946 + HMPREF1078_RS04495 0.18 -1.5 132,030 + HMPREF1078_RS04495 0.25 +0.5 132,060 - HMPREF1078_RS04495 0.28 +0.5 132,124 - HMPREF1078_RS04495 0.33 -0.3 132,128 + HMPREF1078_RS04495 0.34 -1.3 132,133 - HMPREF1078_RS04495 0.34 +0.5 132,144 + HMPREF1078_RS04495 0.35 -0.8 132,144 + HMPREF1078_RS04495 0.35 -0.9 132,145 - HMPREF1078_RS04495 0.35 -1.2 132,146 + HMPREF1078_RS04495 0.35 -1.8 132,147 - HMPREF1078_RS04495 0.35 -1.3 132,147 - HMPREF1078_RS04495 0.35 -0.1 132,147 - HMPREF1078_RS04495 0.35 -0.1 132,353 - HMPREF1078_RS04495 0.53 -1.2 132,353 - HMPREF1078_RS04495 0.53 +0.3
Or see this region's nucleotide sequence