Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04450 and HMPREF1078_RS04455 are separated by 361 nucleotides HMPREF1078_RS04455 and HMPREF1078_RS04460 are separated by 185 nucleotides HMPREF1078_RS04460 and HMPREF1078_RS04465 are separated by 309 nucleotides HMPREF1078_RS04465 and HMPREF1078_RS04470 are separated by 81 nucleotides
HMPREF1078_RS04450: HMPREF1078_RS04450 - DUF6383 domain-containing protein, at 121,747 to 124,929
_RS04450
HMPREF1078_RS04455: HMPREF1078_RS04455 - hypothetical protein, at 125,291 to 125,626
_RS04455
HMPREF1078_RS04460: HMPREF1078_RS04460 - DUF3987 domain-containing protein, at 125,812 to 128,079
_RS04460
HMPREF1078_RS04465: HMPREF1078_RS04465 - HU family DNA-binding protein, at 128,389 to 128,835
_RS04465
HMPREF1078_RS04470: HMPREF1078_RS04470 - DUF4248 domain-containing protein, at 128,917 to 129,141
_RS04470
Position (kb) 125
126
127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 124.823 kb on + strand at 124.823 kb on + strand at 124.824 kb on - strand at 124.827 kb on + strand at 124.828 kb on - strand at 124.877 kb on + strand at 124.877 kb on + strand at 124.878 kb on - strand at 124.878 kb on - strand at 124.878 kb on - strand at 124.881 kb on - strand at 124.881 kb on - strand at 124.944 kb on + strand at 124.948 kb on - strand at 124.948 kb on - strand at 124.952 kb on + strand at 124.978 kb on + strand at 124.978 kb on + strand at 124.979 kb on - strand at 124.992 kb on + strand at 125.035 kb on + strand at 125.070 kb on + strand at 125.071 kb on - strand at 125.073 kb on + strand at 125.073 kb on + strand at 125.080 kb on - strand at 125.082 kb on + strand at 125.082 kb on + strand at 125.083 kb on - strand at 125.088 kb on - strand at 125.088 kb on - strand at 125.098 kb on + strand at 125.098 kb on + strand at 125.138 kb on + strand at 125.138 kb on + strand at 125.138 kb on + strand at 125.139 kb on - strand at 125.216 kb on - strand at 125.217 kb on + strand at 125.294 kb on + strand at 125.295 kb on - strand at 125.321 kb on - strand at 125.321 kb on - strand at 125.329 kb on - strand, within HMPREF1078_RS04455 at 125.388 kb on + strand, within HMPREF1078_RS04455 at 125.427 kb on + strand, within HMPREF1078_RS04455 at 125.433 kb on + strand, within HMPREF1078_RS04455 at 125.434 kb on - strand, within HMPREF1078_RS04455 at 125.478 kb on + strand, within HMPREF1078_RS04455 at 125.588 kb on + strand, within HMPREF1078_RS04455 at 125.592 kb on - strand, within HMPREF1078_RS04455 at 125.683 kb on - strand at 125.705 kb on + strand at 125.705 kb on + strand at 125.706 kb on - strand at 125.803 kb on - strand at 125.825 kb on + strand at 126.033 kb on + strand at 126.033 kb on + strand at 126.034 kb on - strand at 126.055 kb on + strand, within HMPREF1078_RS04460 at 126.056 kb on - strand, within HMPREF1078_RS04460 at 126.328 kb on + strand, within HMPREF1078_RS04460 at 126.595 kb on - strand, within HMPREF1078_RS04460 at 126.614 kb on - strand, within HMPREF1078_RS04460 at 126.614 kb on - strand, within HMPREF1078_RS04460 at 126.614 kb on - strand, within HMPREF1078_RS04460 at 126.680 kb on + strand, within HMPREF1078_RS04460 at 126.980 kb on - strand, within HMPREF1078_RS04460 at 127.443 kb on + strand, within HMPREF1078_RS04460 at 127.443 kb on + strand, within HMPREF1078_RS04460 at 127.443 kb on + strand, within HMPREF1078_RS04460 at 127.444 kb on - strand, within HMPREF1078_RS04460 at 127.942 kb on + strand at 127.996 kb on + strand at 127.999 kb on - strand at 128.027 kb on + strand at 128.145 kb on + strand at 128.146 kb on - strand at 128.146 kb on - strand at 128.187 kb on + strand at 128.210 kb on - strand at 128.238 kb on + strand at 128.239 kb on - strand at 128.336 kb on + strand at 128.345 kb on + strand at 128.370 kb on - strand at 128.388 kb on + strand at 128.401 kb on + strand at 128.461 kb on + strand, within HMPREF1078_RS04465 at 128.756 kb on - strand, within HMPREF1078_RS04465 at 128.869 kb on - strand at 128.946 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 129.073 kb on - strand, within HMPREF1078_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 124,823 + -0.3 124,823 + -1.1 124,824 - +0.0 124,827 + +0.1 124,828 - -0.5 124,877 + +1.1 124,877 + -0.4 124,878 - +0.1 124,878 - -2.0 124,878 - +1.6 124,881 - +1.5 124,881 - -1.5 124,944 + +2.8 124,948 - -0.7 124,948 - +0.1 124,952 + +1.4 124,978 + -0.6 124,978 + +1.2 124,979 - -0.5 124,992 + +1.1 125,035 + -0.1 125,070 + +2.5 125,071 - -0.5 125,073 + +0.9 125,073 + +1.2 125,080 - -1.5 125,082 + -1.6 125,082 + +2.8 125,083 - -0.8 125,088 - -1.0 125,088 - -0.8 125,098 + -1.5 125,098 + +0.9 125,138 + +2.2 125,138 + -0.5 125,138 + -0.1 125,139 - -0.4 125,216 - +0.2 125,217 + -0.8 125,294 + +0.1 125,295 - +0.8 125,321 - -1.3 125,321 - -0.3 125,329 - HMPREF1078_RS04455 0.11 +1.3 125,388 + HMPREF1078_RS04455 0.29 -0.8 125,427 + HMPREF1078_RS04455 0.40 -1.5 125,433 + HMPREF1078_RS04455 0.42 -2.1 125,434 - HMPREF1078_RS04455 0.43 +0.9 125,478 + HMPREF1078_RS04455 0.56 -0.1 125,588 + HMPREF1078_RS04455 0.88 +1.3 125,592 - HMPREF1078_RS04455 0.90 +0.2 125,683 - +1.1 125,705 + +0.0 125,705 + +0.9 125,706 - -0.5 125,803 - -0.5 125,825 + +0.2 126,033 + -1.5 126,033 + -1.1 126,034 - -0.3 126,055 + HMPREF1078_RS04460 0.11 -2.4 126,056 - HMPREF1078_RS04460 0.11 +0.3 126,328 + HMPREF1078_RS04460 0.23 -0.9 126,595 - HMPREF1078_RS04460 0.35 -3.0 126,614 - HMPREF1078_RS04460 0.35 -2.5 126,614 - HMPREF1078_RS04460 0.35 +0.5 126,614 - HMPREF1078_RS04460 0.35 +0.3 126,680 + HMPREF1078_RS04460 0.38 -1.1 126,980 - HMPREF1078_RS04460 0.51 -1.3 127,443 + HMPREF1078_RS04460 0.72 +1.1 127,443 + HMPREF1078_RS04460 0.72 -2.0 127,443 + HMPREF1078_RS04460 0.72 +0.6 127,444 - HMPREF1078_RS04460 0.72 +0.1 127,942 + +1.3 127,996 + +1.4 127,999 - -0.1 128,027 + -0.1 128,145 + -2.0 128,146 - +0.6 128,146 - +1.7 128,187 + -0.1 128,210 - +2.4 128,238 + -1.2 128,239 - -0.8 128,336 + -1.3 128,345 + -0.1 128,370 - +0.4 128,388 + -0.4 128,401 + +0.1 128,461 + HMPREF1078_RS04465 0.16 -1.4 128,756 - HMPREF1078_RS04465 0.82 +0.4 128,869 - +1.4 128,946 - HMPREF1078_RS04470 0.13 +1.5 128,970 - HMPREF1078_RS04470 0.24 -1.3 128,970 - HMPREF1078_RS04470 0.24 -0.8 129,073 - HMPREF1078_RS04470 0.69 -0.8
Or see this region's nucleotide sequence