Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03425 and HMPREF1078_RS03430 are separated by 79 nucleotides HMPREF1078_RS03430 and HMPREF1078_RS03435 are separated by 14 nucleotides HMPREF1078_RS03435 and HMPREF1078_RS03440 are separated by 96 nucleotides
HMPREF1078_RS03425: HMPREF1078_RS03425 - acetate--CoA ligase, at 808,030 to 810,090
_RS03425
HMPREF1078_RS03430: HMPREF1078_RS03430 - GTP-binding protein, at 810,170 to 810,742
_RS03430
HMPREF1078_RS03435: HMPREF1078_RS03435 - hydrogenase maturation nickel metallochaperone HypA, at 810,757 to 811,098
_RS03435
HMPREF1078_RS03440: HMPREF1078_RS03440 - Sua5/YciO/YrdC/YwlC family protein, at 811,195 to 813,063
_RS03440
Position (kb) 810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 809.173 kb on - strand, within HMPREF1078_RS03425 at 809.208 kb on + strand, within HMPREF1078_RS03425 at 809.214 kb on + strand, within HMPREF1078_RS03425 at 809.215 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.408 kb on + strand, within HMPREF1078_RS03425 at 809.409 kb on - strand, within HMPREF1078_RS03425 at 809.419 kb on - strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.494 kb on - strand, within HMPREF1078_RS03425 at 809.495 kb on + strand, within HMPREF1078_RS03425 at 809.496 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.683 kb on - strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.819 kb on - strand, within HMPREF1078_RS03425 at 809.905 kb on - strand at 809.966 kb on + strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.968 kb on + strand at 809.968 kb on + strand at 809.969 kb on - strand at 809.979 kb on + strand at 809.982 kb on - strand at 809.982 kb on - strand at 809.992 kb on + strand at 809.995 kb on + strand at 809.996 kb on - strand at 810.028 kb on + strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.052 kb on + strand at 810.074 kb on - strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.148 kb on + strand at 810.149 kb on - strand at 810.172 kb on - strand at 810.252 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.367 kb on + strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.376 kb on - strand, within HMPREF1078_RS03430 at 810.489 kb on - strand, within HMPREF1078_RS03430 at 810.503 kb on + strand, within HMPREF1078_RS03430 at 810.555 kb on + strand, within HMPREF1078_RS03430 at 810.570 kb on + strand, within HMPREF1078_RS03430 at 810.571 kb on - strand, within HMPREF1078_RS03430 at 810.580 kb on + strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.599 kb on - strand, within HMPREF1078_RS03430 at 810.614 kb on - strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.742 kb on + strand at 810.742 kb on + strand at 810.743 kb on - strand at 810.764 kb on - strand at 810.765 kb on + strand at 810.805 kb on - strand, within HMPREF1078_RS03435 at 810.808 kb on + strand, within HMPREF1078_RS03435 at 810.809 kb on - strand, within HMPREF1078_RS03435 at 810.816 kb on - strand, within HMPREF1078_RS03435 at 810.828 kb on + strand, within HMPREF1078_RS03435 at 810.899 kb on - strand, within HMPREF1078_RS03435 at 810.903 kb on - strand, within HMPREF1078_RS03435 at 810.913 kb on + strand, within HMPREF1078_RS03435 at 810.981 kb on - strand, within HMPREF1078_RS03435 at 811.099 kb on - strand at 811.111 kb on - strand at 811.111 kb on - strand at 811.112 kb on + strand at 811.132 kb on + strand at 811.133 kb on - strand at 811.133 kb on - strand at 811.133 kb on - strand at 811.154 kb on + strand at 811.154 kb on + strand at 811.155 kb on - strand at 811.155 kb on - strand at 811.156 kb on + strand at 811.156 kb on + strand at 811.157 kb on - strand at 811.176 kb on + strand at 811.177 kb on - strand at 811.177 kb on - strand at 811.179 kb on - strand at 811.193 kb on + strand at 811.194 kb on - strand at 811.194 kb on - strand at 811.196 kb on + strand at 811.197 kb on - strand at 811.198 kb on + strand at 811.199 kb on - strand at 811.264 kb on + strand at 811.264 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.267 kb on - strand at 811.267 kb on - strand at 811.267 kb on - strand at 811.429 kb on - strand, within HMPREF1078_RS03440 at 811.486 kb on + strand, within HMPREF1078_RS03440 at 811.516 kb on - strand, within HMPREF1078_RS03440 at 811.532 kb on - strand, within HMPREF1078_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 809,173 - HMPREF1078_RS03425 0.55 -0.8 809,208 + HMPREF1078_RS03425 0.57 +0.0 809,214 + HMPREF1078_RS03425 0.57 -2.2 809,215 - HMPREF1078_RS03425 0.57 -1.5 809,231 - HMPREF1078_RS03425 0.58 -1.3 809,231 - HMPREF1078_RS03425 0.58 -3.0 809,408 + HMPREF1078_RS03425 0.67 +0.1 809,409 - HMPREF1078_RS03425 0.67 -0.8 809,419 - HMPREF1078_RS03425 0.67 -1.8 809,444 + HMPREF1078_RS03425 0.69 -1.7 809,444 + HMPREF1078_RS03425 0.69 -0.1 809,444 + HMPREF1078_RS03425 0.69 +1.5 809,494 - HMPREF1078_RS03425 0.71 -2.0 809,495 + HMPREF1078_RS03425 0.71 +0.5 809,496 - HMPREF1078_RS03425 0.71 -0.1 809,676 - HMPREF1078_RS03425 0.80 -0.1 809,676 - HMPREF1078_RS03425 0.80 -0.5 809,682 + HMPREF1078_RS03425 0.80 -1.1 809,682 + HMPREF1078_RS03425 0.80 -0.1 809,682 + HMPREF1078_RS03425 0.80 -0.5 809,683 - HMPREF1078_RS03425 0.80 -0.1 809,818 + HMPREF1078_RS03425 0.87 +1.5 809,818 + HMPREF1078_RS03425 0.87 -0.5 809,819 - HMPREF1078_RS03425 0.87 -0.8 809,905 - +0.5 809,966 + -0.1 809,967 - -2.2 809,967 - -0.3 809,967 - -1.7 809,967 - -1.8 809,968 + -1.7 809,968 + +0.5 809,969 - +0.9 809,979 + -2.3 809,982 - +0.9 809,982 - -0.3 809,992 + -0.1 809,995 + -3.1 809,996 - -3.2 810,028 + -1.5 810,029 - -0.8 810,029 - -2.2 810,029 - -1.5 810,052 + -0.3 810,074 - -1.1 810,129 + -1.1 810,129 + +2.3 810,129 + -1.3 810,129 + -1.0 810,129 + -0.8 810,130 - +0.7 810,130 - -1.3 810,130 - -1.4 810,148 + -0.8 810,149 - +0.6 810,172 - -0.7 810,252 - HMPREF1078_RS03430 0.14 +0.2 810,350 - HMPREF1078_RS03430 0.31 -2.7 810,350 - HMPREF1078_RS03430 0.31 -0.8 810,367 + HMPREF1078_RS03430 0.34 -0.4 810,368 - HMPREF1078_RS03430 0.35 +0.0 810,368 - HMPREF1078_RS03430 0.35 -1.5 810,368 - HMPREF1078_RS03430 0.35 -0.9 810,368 - HMPREF1078_RS03430 0.35 -0.8 810,368 - HMPREF1078_RS03430 0.35 -1.3 810,376 - HMPREF1078_RS03430 0.36 +0.7 810,489 - HMPREF1078_RS03430 0.56 +0.9 810,503 + HMPREF1078_RS03430 0.58 -1.1 810,555 + HMPREF1078_RS03430 0.67 +0.0 810,570 + HMPREF1078_RS03430 0.70 -0.4 810,571 - HMPREF1078_RS03430 0.70 +0.9 810,580 + HMPREF1078_RS03430 0.72 +0.0 810,581 - HMPREF1078_RS03430 0.72 -2.0 810,581 - HMPREF1078_RS03430 0.72 -1.7 810,599 - HMPREF1078_RS03430 0.75 -0.1 810,614 - HMPREF1078_RS03430 0.77 +0.5 810,632 + HMPREF1078_RS03430 0.81 -2.4 810,632 + HMPREF1078_RS03430 0.81 -1.3 810,742 + -0.1 810,742 + -1.3 810,743 - -1.4 810,764 - -1.0 810,765 + -2.4 810,805 - HMPREF1078_RS03435 0.14 -0.3 810,808 + HMPREF1078_RS03435 0.15 -0.8 810,809 - HMPREF1078_RS03435 0.15 -0.0 810,816 - HMPREF1078_RS03435 0.17 -0.2 810,828 + HMPREF1078_RS03435 0.21 -2.0 810,899 - HMPREF1078_RS03435 0.42 -1.3 810,903 - HMPREF1078_RS03435 0.43 -0.1 810,913 + HMPREF1078_RS03435 0.46 +1.1 810,981 - HMPREF1078_RS03435 0.65 +0.7 811,099 - +1.8 811,111 - +0.7 811,111 - -2.1 811,112 + +1.5 811,132 + +0.9 811,133 - +0.2 811,133 - -1.1 811,133 - -0.8 811,154 + +1.8 811,154 + +0.7 811,155 - -0.7 811,155 - +0.4 811,156 + -2.3 811,156 + -1.0 811,157 - +1.0 811,176 + +3.1 811,177 - +0.2 811,177 - +0.7 811,179 - +0.5 811,193 + +0.8 811,194 - -0.1 811,194 - -2.2 811,196 + +0.9 811,197 - +1.5 811,198 + +1.0 811,199 - -0.8 811,264 + -1.3 811,264 + -2.0 811,266 + -1.2 811,266 + +0.2 811,266 + +0.5 811,266 + -2.6 811,266 + -1.5 811,267 - +0.7 811,267 - +1.5 811,267 - +1.5 811,429 - HMPREF1078_RS03440 0.13 -1.6 811,486 + HMPREF1078_RS03440 0.16 -0.7 811,516 - HMPREF1078_RS03440 0.17 -1.6 811,532 - HMPREF1078_RS03440 0.18 -2.1
Or see this region's nucleotide sequence