Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03420 and HMPREF1078_RS03425 are separated by 267 nucleotides HMPREF1078_RS03425 and HMPREF1078_RS03430 are separated by 79 nucleotides HMPREF1078_RS03430 and HMPREF1078_RS03435 are separated by 14 nucleotides
HMPREF1078_RS03420: HMPREF1078_RS03420 - pyruvate, phosphate dikinase, at 805,039 to 807,762
_RS03420
HMPREF1078_RS03425: HMPREF1078_RS03425 - acetate--CoA ligase, at 808,030 to 810,090
_RS03425
HMPREF1078_RS03430: HMPREF1078_RS03430 - GTP-binding protein, at 810,170 to 810,742
_RS03430
HMPREF1078_RS03435: HMPREF1078_RS03435 - hydrogenase maturation nickel metallochaperone HypA, at 810,757 to 811,098
_RS03435
Position (kb) 808
809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 807.063 kb on - strand, within HMPREF1078_RS03420 at 807.262 kb on - strand, within HMPREF1078_RS03420 at 807.326 kb on + strand, within HMPREF1078_RS03420 at 807.348 kb on - strand, within HMPREF1078_RS03420 at 807.388 kb on + strand, within HMPREF1078_RS03420 at 807.419 kb on - strand, within HMPREF1078_RS03420 at 807.450 kb on + strand, within HMPREF1078_RS03420 at 807.450 kb on + strand, within HMPREF1078_RS03420 at 807.451 kb on - strand, within HMPREF1078_RS03420 at 807.451 kb on - strand, within HMPREF1078_RS03420 at 807.532 kb on - strand at 807.597 kb on - strand at 807.610 kb on + strand at 807.610 kb on + strand at 807.611 kb on - strand at 807.611 kb on - strand at 807.621 kb on + strand at 807.621 kb on + strand at 807.622 kb on - strand at 807.624 kb on + strand at 807.624 kb on + strand at 807.624 kb on + strand at 807.627 kb on + strand at 807.628 kb on - strand at 807.649 kb on + strand at 807.676 kb on - strand at 807.676 kb on - strand at 807.684 kb on + strand at 807.685 kb on - strand at 807.705 kb on + strand at 807.706 kb on - strand at 807.736 kb on + strand at 807.773 kb on - strand at 807.824 kb on - strand at 807.831 kb on - strand at 807.831 kb on - strand at 807.853 kb on + strand at 807.878 kb on + strand at 807.878 kb on + strand at 807.901 kb on - strand at 807.901 kb on - strand at 807.901 kb on - strand at 807.912 kb on - strand at 807.915 kb on + strand at 807.944 kb on + strand at 807.945 kb on - strand at 807.977 kb on - strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.007 kb on - strand at 808.045 kb on + strand at 808.047 kb on + strand at 808.047 kb on + strand at 808.057 kb on + strand at 808.057 kb on + strand at 808.058 kb on - strand at 808.150 kb on + strand at 808.151 kb on - strand at 808.204 kb on + strand at 808.204 kb on + strand at 808.204 kb on + strand at 808.205 kb on - strand at 808.207 kb on - strand at 808.209 kb on + strand at 808.209 kb on + strand at 808.210 kb on - strand at 808.241 kb on + strand, within HMPREF1078_RS03425 at 808.242 kb on - strand, within HMPREF1078_RS03425 at 808.254 kb on - strand, within HMPREF1078_RS03425 at 808.267 kb on + strand, within HMPREF1078_RS03425 at 808.274 kb on + strand, within HMPREF1078_RS03425 at 808.275 kb on - strand, within HMPREF1078_RS03425 at 808.275 kb on - strand, within HMPREF1078_RS03425 at 808.275 kb on - strand, within HMPREF1078_RS03425 at 808.350 kb on - strand, within HMPREF1078_RS03425 at 808.353 kb on + strand, within HMPREF1078_RS03425 at 808.353 kb on + strand, within HMPREF1078_RS03425 at 808.353 kb on + strand, within HMPREF1078_RS03425 at 808.354 kb on - strand, within HMPREF1078_RS03425 at 808.354 kb on - strand, within HMPREF1078_RS03425 at 808.360 kb on + strand, within HMPREF1078_RS03425 at 808.360 kb on + strand, within HMPREF1078_RS03425 at 808.361 kb on - strand, within HMPREF1078_RS03425 at 808.497 kb on + strand, within HMPREF1078_RS03425 at 808.497 kb on + strand, within HMPREF1078_RS03425 at 808.498 kb on - strand, within HMPREF1078_RS03425 at 808.498 kb on - strand, within HMPREF1078_RS03425 at 808.501 kb on + strand, within HMPREF1078_RS03425 at 808.501 kb on + strand, within HMPREF1078_RS03425 at 808.501 kb on + strand, within HMPREF1078_RS03425 at 808.502 kb on - strand, within HMPREF1078_RS03425 at 808.503 kb on + strand, within HMPREF1078_RS03425 at 808.514 kb on - strand, within HMPREF1078_RS03425 at 808.522 kb on + strand, within HMPREF1078_RS03425 at 808.537 kb on - strand, within HMPREF1078_RS03425 at 808.537 kb on - strand, within HMPREF1078_RS03425 at 808.537 kb on - strand, within HMPREF1078_RS03425 at 808.588 kb on + strand, within HMPREF1078_RS03425 at 808.601 kb on - strand, within HMPREF1078_RS03425 at 808.623 kb on + strand, within HMPREF1078_RS03425 at 808.674 kb on + strand, within HMPREF1078_RS03425 at 808.703 kb on + strand, within HMPREF1078_RS03425 at 808.703 kb on + strand, within HMPREF1078_RS03425 at 808.704 kb on - strand, within HMPREF1078_RS03425 at 808.711 kb on + strand, within HMPREF1078_RS03425 at 808.712 kb on - strand, within HMPREF1078_RS03425 at 808.712 kb on - strand, within HMPREF1078_RS03425 at 808.720 kb on - strand, within HMPREF1078_RS03425 at 808.835 kb on - strand, within HMPREF1078_RS03425 at 808.835 kb on - strand, within HMPREF1078_RS03425 at 808.887 kb on + strand, within HMPREF1078_RS03425 at 808.901 kb on + strand, within HMPREF1078_RS03425 at 808.901 kb on + strand, within HMPREF1078_RS03425 at 808.901 kb on + strand, within HMPREF1078_RS03425 at 808.901 kb on + strand, within HMPREF1078_RS03425 at 808.902 kb on - strand, within HMPREF1078_RS03425 at 808.902 kb on - strand, within HMPREF1078_RS03425 at 808.905 kb on + strand, within HMPREF1078_RS03425 at 808.911 kb on - strand, within HMPREF1078_RS03425 at 808.941 kb on + strand, within HMPREF1078_RS03425 at 808.942 kb on - strand, within HMPREF1078_RS03425 at 808.959 kb on + strand, within HMPREF1078_RS03425 at 809.014 kb on - strand, within HMPREF1078_RS03425 at 809.014 kb on - strand, within HMPREF1078_RS03425 at 809.028 kb on + strand, within HMPREF1078_RS03425 at 809.028 kb on + strand, within HMPREF1078_RS03425 at 809.028 kb on + strand, within HMPREF1078_RS03425 at 809.029 kb on - strand, within HMPREF1078_RS03425 at 809.029 kb on - strand, within HMPREF1078_RS03425 at 809.029 kb on - strand, within HMPREF1078_RS03425 at 809.033 kb on - strand, within HMPREF1078_RS03425 at 809.103 kb on + strand, within HMPREF1078_RS03425 at 809.104 kb on - strand, within HMPREF1078_RS03425 at 809.173 kb on - strand, within HMPREF1078_RS03425 at 809.208 kb on + strand, within HMPREF1078_RS03425 at 809.214 kb on + strand, within HMPREF1078_RS03425 at 809.215 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.408 kb on + strand, within HMPREF1078_RS03425 at 809.409 kb on - strand, within HMPREF1078_RS03425 at 809.419 kb on - strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.494 kb on - strand, within HMPREF1078_RS03425 at 809.495 kb on + strand, within HMPREF1078_RS03425 at 809.496 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.683 kb on - strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.819 kb on - strand, within HMPREF1078_RS03425 at 809.905 kb on - strand at 809.966 kb on + strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.968 kb on + strand at 809.968 kb on + strand at 809.969 kb on - strand at 809.979 kb on + strand at 809.982 kb on - strand at 809.982 kb on - strand at 809.992 kb on + strand at 809.995 kb on + strand at 809.996 kb on - strand at 810.028 kb on + strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.052 kb on + strand at 810.074 kb on - strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.148 kb on + strand at 810.149 kb on - strand at 810.172 kb on - strand at 810.252 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.367 kb on + strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.376 kb on - strand, within HMPREF1078_RS03430 at 810.489 kb on - strand, within HMPREF1078_RS03430 at 810.503 kb on + strand, within HMPREF1078_RS03430 at 810.555 kb on + strand, within HMPREF1078_RS03430 at 810.570 kb on + strand, within HMPREF1078_RS03430 at 810.571 kb on - strand, within HMPREF1078_RS03430 at 810.580 kb on + strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.599 kb on - strand, within HMPREF1078_RS03430 at 810.614 kb on - strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.742 kb on + strand at 810.742 kb on + strand at 810.743 kb on - strand at 810.764 kb on - strand at 810.765 kb on + strand at 810.805 kb on - strand, within HMPREF1078_RS03435 at 810.808 kb on + strand, within HMPREF1078_RS03435 at 810.809 kb on - strand, within HMPREF1078_RS03435 at 810.816 kb on - strand, within HMPREF1078_RS03435 at 810.828 kb on + strand, within HMPREF1078_RS03435 at 810.899 kb on - strand, within HMPREF1078_RS03435 at 810.903 kb on - strand, within HMPREF1078_RS03435 at 810.913 kb on + strand, within HMPREF1078_RS03435 at 810.981 kb on - strand, within HMPREF1078_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 807,063 - HMPREF1078_RS03420 0.74 -1.1 807,262 - HMPREF1078_RS03420 0.82 -0.1 807,326 + HMPREF1078_RS03420 0.84 -2.5 807,348 - HMPREF1078_RS03420 0.85 +1.2 807,388 + HMPREF1078_RS03420 0.86 +0.5 807,419 - HMPREF1078_RS03420 0.87 -1.2 807,450 + HMPREF1078_RS03420 0.89 -0.8 807,450 + HMPREF1078_RS03420 0.89 -1.6 807,451 - HMPREF1078_RS03420 0.89 +0.5 807,451 - HMPREF1078_RS03420 0.89 -2.4 807,532 - -0.8 807,597 - -1.3 807,610 + -1.7 807,610 + -0.1 807,611 - -1.4 807,611 - +0.5 807,621 + -2.9 807,621 + -1.7 807,622 - -0.1 807,624 + -0.5 807,624 + -2.6 807,624 + +0.5 807,627 + -1.2 807,628 - +0.2 807,649 + +0.9 807,676 - -1.4 807,676 - -0.5 807,684 + -1.5 807,685 - -2.4 807,705 + -1.8 807,706 - -2.0 807,736 + +0.7 807,773 - -0.8 807,824 - +0.9 807,831 - +0.5 807,831 - -1.5 807,853 + -0.5 807,878 + +1.5 807,878 + +2.3 807,901 - -0.5 807,901 - +0.3 807,901 - +2.5 807,912 - -0.1 807,915 + +0.8 807,944 + -0.7 807,945 - -2.1 807,977 - +0.4 808,003 + -1.9 808,003 + -2.5 808,003 + +0.0 808,007 - -1.4 808,045 + -1.1 808,047 + +0.5 808,047 + -0.8 808,057 + +0.5 808,057 + -1.3 808,058 - -2.1 808,150 + +0.3 808,151 - -1.8 808,204 + -0.8 808,204 + -0.5 808,204 + -1.1 808,205 - -0.1 808,207 - -1.3 808,209 + -1.3 808,209 + -1.1 808,210 - +1.5 808,241 + HMPREF1078_RS03425 0.10 -1.1 808,242 - HMPREF1078_RS03425 0.10 -0.1 808,254 - HMPREF1078_RS03425 0.11 -1.5 808,267 + HMPREF1078_RS03425 0.11 -0.5 808,274 + HMPREF1078_RS03425 0.12 -2.2 808,275 - HMPREF1078_RS03425 0.12 -1.7 808,275 - HMPREF1078_RS03425 0.12 -1.1 808,275 - HMPREF1078_RS03425 0.12 -1.8 808,350 - HMPREF1078_RS03425 0.16 -1.5 808,353 + HMPREF1078_RS03425 0.16 -1.1 808,353 + HMPREF1078_RS03425 0.16 -1.1 808,353 + HMPREF1078_RS03425 0.16 -0.8 808,354 - HMPREF1078_RS03425 0.16 +1.5 808,354 - HMPREF1078_RS03425 0.16 -2.6 808,360 + HMPREF1078_RS03425 0.16 +1.5 808,360 + HMPREF1078_RS03425 0.16 -1.3 808,361 - HMPREF1078_RS03425 0.16 -1.7 808,497 + HMPREF1078_RS03425 0.23 -0.1 808,497 + HMPREF1078_RS03425 0.23 +1.1 808,498 - HMPREF1078_RS03425 0.23 +1.9 808,498 - HMPREF1078_RS03425 0.23 -1.7 808,501 + HMPREF1078_RS03425 0.23 -2.3 808,501 + HMPREF1078_RS03425 0.23 +1.5 808,501 + HMPREF1078_RS03425 0.23 -0.5 808,502 - HMPREF1078_RS03425 0.23 -1.3 808,503 + HMPREF1078_RS03425 0.23 -1.5 808,514 - HMPREF1078_RS03425 0.23 +2.5 808,522 + HMPREF1078_RS03425 0.24 +1.5 808,537 - HMPREF1078_RS03425 0.25 -2.9 808,537 - HMPREF1078_RS03425 0.25 -0.5 808,537 - HMPREF1078_RS03425 0.25 -0.1 808,588 + HMPREF1078_RS03425 0.27 -0.8 808,601 - HMPREF1078_RS03425 0.28 -0.7 808,623 + HMPREF1078_RS03425 0.29 +0.8 808,674 + HMPREF1078_RS03425 0.31 +1.1 808,703 + HMPREF1078_RS03425 0.33 +0.7 808,703 + HMPREF1078_RS03425 0.33 -0.8 808,704 - HMPREF1078_RS03425 0.33 -0.1 808,711 + HMPREF1078_RS03425 0.33 -0.1 808,712 - HMPREF1078_RS03425 0.33 -2.8 808,712 - HMPREF1078_RS03425 0.33 -1.7 808,720 - HMPREF1078_RS03425 0.33 -2.0 808,835 - HMPREF1078_RS03425 0.39 +0.8 808,835 - HMPREF1078_RS03425 0.39 -0.5 808,887 + HMPREF1078_RS03425 0.42 -2.2 808,901 + HMPREF1078_RS03425 0.42 -0.1 808,901 + HMPREF1078_RS03425 0.42 +1.5 808,901 + HMPREF1078_RS03425 0.42 -0.5 808,901 + HMPREF1078_RS03425 0.42 -2.0 808,902 - HMPREF1078_RS03425 0.42 -1.1 808,902 - HMPREF1078_RS03425 0.42 -2.7 808,905 + HMPREF1078_RS03425 0.42 -2.1 808,911 - HMPREF1078_RS03425 0.43 -1.1 808,941 + HMPREF1078_RS03425 0.44 -1.1 808,942 - HMPREF1078_RS03425 0.44 -1.5 808,959 + HMPREF1078_RS03425 0.45 -2.3 809,014 - HMPREF1078_RS03425 0.48 -3.0 809,014 - HMPREF1078_RS03425 0.48 -1.4 809,028 + HMPREF1078_RS03425 0.48 -2.0 809,028 + HMPREF1078_RS03425 0.48 +1.5 809,028 + HMPREF1078_RS03425 0.48 +0.8 809,029 - HMPREF1078_RS03425 0.48 -0.5 809,029 - HMPREF1078_RS03425 0.48 -1.3 809,029 - HMPREF1078_RS03425 0.48 +1.2 809,033 - HMPREF1078_RS03425 0.49 -0.2 809,103 + HMPREF1078_RS03425 0.52 -1.4 809,104 - HMPREF1078_RS03425 0.52 -1.1 809,173 - HMPREF1078_RS03425 0.55 -0.8 809,208 + HMPREF1078_RS03425 0.57 +0.0 809,214 + HMPREF1078_RS03425 0.57 -2.2 809,215 - HMPREF1078_RS03425 0.57 -1.5 809,231 - HMPREF1078_RS03425 0.58 -1.3 809,231 - HMPREF1078_RS03425 0.58 -3.0 809,408 + HMPREF1078_RS03425 0.67 +0.1 809,409 - HMPREF1078_RS03425 0.67 -0.8 809,419 - HMPREF1078_RS03425 0.67 -1.8 809,444 + HMPREF1078_RS03425 0.69 -1.7 809,444 + HMPREF1078_RS03425 0.69 -0.1 809,444 + HMPREF1078_RS03425 0.69 +1.5 809,494 - HMPREF1078_RS03425 0.71 -2.0 809,495 + HMPREF1078_RS03425 0.71 +0.5 809,496 - HMPREF1078_RS03425 0.71 -0.1 809,676 - HMPREF1078_RS03425 0.80 -0.1 809,676 - HMPREF1078_RS03425 0.80 -0.5 809,682 + HMPREF1078_RS03425 0.80 -1.1 809,682 + HMPREF1078_RS03425 0.80 -0.1 809,682 + HMPREF1078_RS03425 0.80 -0.5 809,683 - HMPREF1078_RS03425 0.80 -0.1 809,818 + HMPREF1078_RS03425 0.87 +1.5 809,818 + HMPREF1078_RS03425 0.87 -0.5 809,819 - HMPREF1078_RS03425 0.87 -0.8 809,905 - +0.5 809,966 + -0.1 809,967 - -2.2 809,967 - -0.3 809,967 - -1.7 809,967 - -1.8 809,968 + -1.7 809,968 + +0.5 809,969 - +0.9 809,979 + -2.3 809,982 - +0.9 809,982 - -0.3 809,992 + -0.1 809,995 + -3.1 809,996 - -3.2 810,028 + -1.5 810,029 - -0.8 810,029 - -2.2 810,029 - -1.5 810,052 + -0.3 810,074 - -1.1 810,129 + -1.1 810,129 + +2.3 810,129 + -1.3 810,129 + -1.0 810,129 + -0.8 810,130 - +0.7 810,130 - -1.3 810,130 - -1.4 810,148 + -0.8 810,149 - +0.6 810,172 - -0.7 810,252 - HMPREF1078_RS03430 0.14 +0.2 810,350 - HMPREF1078_RS03430 0.31 -2.7 810,350 - HMPREF1078_RS03430 0.31 -0.8 810,367 + HMPREF1078_RS03430 0.34 -0.4 810,368 - HMPREF1078_RS03430 0.35 +0.0 810,368 - HMPREF1078_RS03430 0.35 -1.5 810,368 - HMPREF1078_RS03430 0.35 -0.9 810,368 - HMPREF1078_RS03430 0.35 -0.8 810,368 - HMPREF1078_RS03430 0.35 -1.3 810,376 - HMPREF1078_RS03430 0.36 +0.7 810,489 - HMPREF1078_RS03430 0.56 +0.9 810,503 + HMPREF1078_RS03430 0.58 -1.1 810,555 + HMPREF1078_RS03430 0.67 +0.0 810,570 + HMPREF1078_RS03430 0.70 -0.4 810,571 - HMPREF1078_RS03430 0.70 +0.9 810,580 + HMPREF1078_RS03430 0.72 +0.0 810,581 - HMPREF1078_RS03430 0.72 -2.0 810,581 - HMPREF1078_RS03430 0.72 -1.7 810,599 - HMPREF1078_RS03430 0.75 -0.1 810,614 - HMPREF1078_RS03430 0.77 +0.5 810,632 + HMPREF1078_RS03430 0.81 -2.4 810,632 + HMPREF1078_RS03430 0.81 -1.3 810,742 + -0.1 810,742 + -1.3 810,743 - -1.4 810,764 - -1.0 810,765 + -2.4 810,805 - HMPREF1078_RS03435 0.14 -0.3 810,808 + HMPREF1078_RS03435 0.15 -0.8 810,809 - HMPREF1078_RS03435 0.15 -0.0 810,816 - HMPREF1078_RS03435 0.17 -0.2 810,828 + HMPREF1078_RS03435 0.21 -2.0 810,899 - HMPREF1078_RS03435 0.42 -1.3 810,903 - HMPREF1078_RS03435 0.43 -0.1 810,913 + HMPREF1078_RS03435 0.46 +1.1 810,981 - HMPREF1078_RS03435 0.65 +0.7
Or see this region's nucleotide sequence