Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03225 and HMPREF1078_RS03230 are separated by 30 nucleotides HMPREF1078_RS03230 and HMPREF1078_RS03235 overlap by 17 nucleotides HMPREF1078_RS03235 and HMPREF1078_RS03240 are separated by 29 nucleotides
HMPREF1078_RS03225: HMPREF1078_RS03225 - toprim domain-containing protein, at 764,989 to 766,176
_RS03225
HMPREF1078_RS03230: HMPREF1078_RS03230 - zincin-like metallopeptidase domain-containing protein, at 766,207 to 767,532
_RS03230
HMPREF1078_RS03235: HMPREF1078_RS03235 - hypothetical protein, at 767,516 to 767,746
_RS03235
HMPREF1078_RS03240: HMPREF1078_RS03240 - DNA mismatch repair protein MutS, at 767,776 to 769,095
_RS03240
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.293 kb on - strand, within HMPREF1078_RS03225 at 765.365 kb on - strand, within HMPREF1078_RS03225 at 765.487 kb on + strand, within HMPREF1078_RS03225 at 765.487 kb on + strand, within HMPREF1078_RS03225 at 765.487 kb on + strand, within HMPREF1078_RS03225 at 765.488 kb on - strand, within HMPREF1078_RS03225 at 765.621 kb on + strand, within HMPREF1078_RS03225 at 765.622 kb on - strand, within HMPREF1078_RS03225 at 765.641 kb on + strand, within HMPREF1078_RS03225 at 765.641 kb on + strand, within HMPREF1078_RS03225 at 765.673 kb on + strand, within HMPREF1078_RS03225 at 765.673 kb on + strand, within HMPREF1078_RS03225 at 765.673 kb on + strand, within HMPREF1078_RS03225 at 765.674 kb on + strand, within HMPREF1078_RS03225 at 765.819 kb on + strand, within HMPREF1078_RS03225 at 765.820 kb on - strand, within HMPREF1078_RS03225 at 766.113 kb on - strand at 766.113 kb on - strand at 766.189 kb on - strand at 766.196 kb on + strand at 766.196 kb on + strand at 766.196 kb on + strand at 766.199 kb on - strand at 766.212 kb on + strand at 766.213 kb on - strand at 766.225 kb on - strand at 766.251 kb on + strand at 766.251 kb on + strand at 766.252 kb on - strand at 766.252 kb on - strand at 766.254 kb on + strand at 766.269 kb on - strand at 766.331 kb on + strand at 766.385 kb on + strand, within HMPREF1078_RS03230 at 766.385 kb on + strand, within HMPREF1078_RS03230 at 766.403 kb on + strand, within HMPREF1078_RS03230 at 766.404 kb on - strand, within HMPREF1078_RS03230 at 766.404 kb on - strand, within HMPREF1078_RS03230 at 766.496 kb on + strand, within HMPREF1078_RS03230 at 766.609 kb on + strand, within HMPREF1078_RS03230 at 766.631 kb on + strand, within HMPREF1078_RS03230 at 766.632 kb on - strand, within HMPREF1078_RS03230 at 766.817 kb on + strand, within HMPREF1078_RS03230 at 766.818 kb on - strand, within HMPREF1078_RS03230 at 766.835 kb on + strand, within HMPREF1078_RS03230 at 766.893 kb on + strand, within HMPREF1078_RS03230 at 766.893 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 767.001 kb on + strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.099 kb on + strand, within HMPREF1078_RS03230 at 767.100 kb on - strand, within HMPREF1078_RS03230 at 767.100 kb on - strand, within HMPREF1078_RS03230 at 767.215 kb on - strand, within HMPREF1078_RS03230 at 767.222 kb on + strand, within HMPREF1078_RS03230 at 767.222 kb on + strand, within HMPREF1078_RS03230 at 767.223 kb on - strand, within HMPREF1078_RS03230 at 767.223 kb on - strand, within HMPREF1078_RS03230 at 767.271 kb on + strand, within HMPREF1078_RS03230 at 767.455 kb on - strand at 767.532 kb on + strand at 767.533 kb on - strand at 767.533 kb on - strand at 767.590 kb on - strand, within HMPREF1078_RS03235 at 767.590 kb on - strand, within HMPREF1078_RS03235 at 767.691 kb on - strand, within HMPREF1078_RS03235 at 767.746 kb on + strand at 767.746 kb on + strand at 767.748 kb on + strand at 767.749 kb on - strand at 767.755 kb on + strand at 767.756 kb on - strand at 767.760 kb on + strand at 767.760 kb on + strand at 767.773 kb on - strand at 767.773 kb on - strand at 767.818 kb on - strand at 767.818 kb on - strand at 767.853 kb on - strand at 767.853 kb on - strand at 768.191 kb on + strand, within HMPREF1078_RS03240 at 768.230 kb on + strand, within HMPREF1078_RS03240 at 768.231 kb on - strand, within HMPREF1078_RS03240 at 768.469 kb on - strand, within HMPREF1078_RS03240
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 765,293 - HMPREF1078_RS03225 0.26 +1.5 765,365 - HMPREF1078_RS03225 0.32 -1.8 765,487 + HMPREF1078_RS03225 0.42 -1.3 765,487 + HMPREF1078_RS03225 0.42 -0.2 765,487 + HMPREF1078_RS03225 0.42 +1.8 765,488 - HMPREF1078_RS03225 0.42 +0.5 765,621 + HMPREF1078_RS03225 0.53 -1.7 765,622 - HMPREF1078_RS03225 0.53 +0.3 765,641 + HMPREF1078_RS03225 0.55 -2.1 765,641 + HMPREF1078_RS03225 0.55 -0.1 765,673 + HMPREF1078_RS03225 0.58 -3.2 765,673 + HMPREF1078_RS03225 0.58 -1.0 765,673 + HMPREF1078_RS03225 0.58 -0.8 765,674 + HMPREF1078_RS03225 0.58 -1.2 765,819 + HMPREF1078_RS03225 0.70 -0.8 765,820 - HMPREF1078_RS03225 0.70 -1.2 766,113 - -0.1 766,113 - +0.4 766,189 - -2.1 766,196 + -1.1 766,196 + +2.0 766,196 + -1.5 766,199 - +1.5 766,212 + -0.5 766,213 - -0.7 766,225 - -0.7 766,251 + -1.8 766,251 + +2.0 766,252 - +1.8 766,252 - -0.5 766,254 + +0.4 766,269 - +1.1 766,331 + +0.0 766,385 + HMPREF1078_RS03230 0.13 -1.6 766,385 + HMPREF1078_RS03230 0.13 -1.6 766,403 + HMPREF1078_RS03230 0.15 -0.7 766,404 - HMPREF1078_RS03230 0.15 +1.9 766,404 - HMPREF1078_RS03230 0.15 +0.5 766,496 + HMPREF1078_RS03230 0.22 +1.7 766,609 + HMPREF1078_RS03230 0.30 +1.5 766,631 + HMPREF1078_RS03230 0.32 +0.1 766,632 - HMPREF1078_RS03230 0.32 +0.5 766,817 + HMPREF1078_RS03230 0.46 -0.9 766,818 - HMPREF1078_RS03230 0.46 +2.5 766,835 + HMPREF1078_RS03230 0.47 -1.5 766,893 + HMPREF1078_RS03230 0.52 -1.7 766,893 + HMPREF1078_RS03230 0.52 +2.5 766,997 + HMPREF1078_RS03230 0.60 -1.5 766,997 + HMPREF1078_RS03230 0.60 +0.4 766,997 + HMPREF1078_RS03230 0.60 +1.5 766,997 + HMPREF1078_RS03230 0.60 +0.7 767,001 + HMPREF1078_RS03230 0.60 +1.6 767,002 - HMPREF1078_RS03230 0.60 -1.8 767,002 - HMPREF1078_RS03230 0.60 -0.6 767,002 - HMPREF1078_RS03230 0.60 -1.4 767,099 + HMPREF1078_RS03230 0.67 +0.5 767,100 - HMPREF1078_RS03230 0.67 -0.8 767,100 - HMPREF1078_RS03230 0.67 -0.1 767,215 - HMPREF1078_RS03230 0.76 -0.5 767,222 + HMPREF1078_RS03230 0.77 +1.0 767,222 + HMPREF1078_RS03230 0.77 -1.3 767,223 - HMPREF1078_RS03230 0.77 -0.7 767,223 - HMPREF1078_RS03230 0.77 -1.4 767,271 + HMPREF1078_RS03230 0.80 +1.6 767,455 - -1.5 767,532 + +1.0 767,533 - -1.0 767,533 - +0.7 767,590 - HMPREF1078_RS03235 0.32 +0.9 767,590 - HMPREF1078_RS03235 0.32 +0.2 767,691 - HMPREF1078_RS03235 0.76 -0.5 767,746 + -1.5 767,746 + -0.1 767,748 + -1.5 767,749 - -1.2 767,755 + -0.5 767,756 - -2.5 767,760 + -1.3 767,760 + +0.8 767,773 - -0.5 767,773 - -1.5 767,818 - +0.1 767,818 - +1.1 767,853 - -2.4 767,853 - +0.6 768,191 + HMPREF1078_RS03240 0.31 -2.9 768,230 + HMPREF1078_RS03240 0.34 +1.8 768,231 - HMPREF1078_RS03240 0.34 -2.7 768,469 - HMPREF1078_RS03240 0.53 +0.6
Or see this region's nucleotide sequence