Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03565 and HMPREF1078_RS20060 are separated by 195 nucleotides HMPREF1078_RS20060 and HMPREF1078_RS03570 are separated by 495 nucleotides
HMPREF1078_RS03565: HMPREF1078_RS03565 - glycoside hydrolase family 127 protein, at 837,011 to 838,888
_RS03565
HMPREF1078_RS20060: HMPREF1078_RS20060 - hypothetical protein, at 839,084 to 839,218
_RS20060
HMPREF1078_RS03570: HMPREF1078_RS03570 - RNA polymerase sigma-70 factor, at 839,714 to 840,304
_RS03570
Position (kb) 839
840 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 838.198 kb on + strand, within HMPREF1078_RS03565 at 838.250 kb on - strand, within HMPREF1078_RS03565 at 838.250 kb on - strand, within HMPREF1078_RS03565 at 838.251 kb on + strand, within HMPREF1078_RS03565 at 838.251 kb on + strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.341 kb on + strand, within HMPREF1078_RS03565 at 838.450 kb on - strand, within HMPREF1078_RS03565 at 838.475 kb on - strand, within HMPREF1078_RS03565 at 838.476 kb on + strand, within HMPREF1078_RS03565 at 838.476 kb on + strand, within HMPREF1078_RS03565 at 838.477 kb on - strand, within HMPREF1078_RS03565 at 838.505 kb on + strand, within HMPREF1078_RS03565 at 838.505 kb on + strand, within HMPREF1078_RS03565 at 838.525 kb on - strand, within HMPREF1078_RS03565 at 838.767 kb on - strand at 838.771 kb on - strand at 838.793 kb on + strand at 838.812 kb on - strand at 838.888 kb on + strand at 838.909 kb on + strand at 838.943 kb on + strand at 838.944 kb on - strand at 838.964 kb on + strand at 838.980 kb on + strand at 838.996 kb on + strand at 838.999 kb on + strand at 839.000 kb on - strand at 839.049 kb on - strand at 839.054 kb on + strand at 839.055 kb on - strand at 839.056 kb on + strand at 839.070 kb on - strand at 839.072 kb on + strand at 839.073 kb on - strand at 839.079 kb on + strand at 839.079 kb on + strand at 839.094 kb on - strand at 839.094 kb on - strand at 839.094 kb on - strand at 839.122 kb on + strand, within HMPREF1078_RS20060 at 839.123 kb on - strand, within HMPREF1078_RS20060 at 839.149 kb on - strand, within HMPREF1078_RS20060 at 839.162 kb on + strand, within HMPREF1078_RS20060 at 839.162 kb on + strand, within HMPREF1078_RS20060 at 839.163 kb on - strand, within HMPREF1078_RS20060 at 839.163 kb on - strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.176 kb on + strand, within HMPREF1078_RS20060 at 839.177 kb on - strand, within HMPREF1078_RS20060 at 839.180 kb on - strand, within HMPREF1078_RS20060 at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.259 kb on + strand at 839.260 kb on - strand at 839.260 kb on - strand at 839.260 kb on - strand at 839.272 kb on + strand at 839.282 kb on - strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.284 kb on - strand at 839.284 kb on - strand at 839.284 kb on - strand at 839.296 kb on - strand at 839.296 kb on - strand at 839.299 kb on + strand at 839.299 kb on + strand at 839.300 kb on - strand at 839.300 kb on - strand at 839.300 kb on - strand at 839.316 kb on - strand at 839.331 kb on - strand at 839.331 kb on - strand at 839.350 kb on - strand at 839.360 kb on + strand at 839.360 kb on + strand at 839.399 kb on - strand at 839.399 kb on - strand at 839.424 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.673 kb on + strand at 839.683 kb on + strand at 839.690 kb on + strand at 839.796 kb on + strand, within HMPREF1078_RS03570 at 839.959 kb on - strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.972 kb on - strand, within HMPREF1078_RS03570 at 839.978 kb on + strand, within HMPREF1078_RS03570 at 840.024 kb on + strand, within HMPREF1078_RS03570 at 840.053 kb on - strand, within HMPREF1078_RS03570 at 840.053 kb on - strand, within HMPREF1078_RS03570 at 840.057 kb on - strand, within HMPREF1078_RS03570 at 840.057 kb on - strand, within HMPREF1078_RS03570 at 840.100 kb on + strand, within HMPREF1078_RS03570 at 840.101 kb on - strand, within HMPREF1078_RS03570 at 840.158 kb on + strand, within HMPREF1078_RS03570 at 840.159 kb on - strand, within HMPREF1078_RS03570 at 840.159 kb on - strand, within HMPREF1078_RS03570 at 840.160 kb on + strand, within HMPREF1078_RS03570 at 840.161 kb on - strand, within HMPREF1078_RS03570 at 840.186 kb on + strand, within HMPREF1078_RS03570 at 840.212 kb on - strand, within HMPREF1078_RS03570 at 840.213 kb on + strand, within HMPREF1078_RS03570 at 840.213 kb on + strand, within HMPREF1078_RS03570 at 840.214 kb on - strand, within HMPREF1078_RS03570 at 840.217 kb on + strand, within HMPREF1078_RS03570 at 840.218 kb on - strand, within HMPREF1078_RS03570 at 840.218 kb on - strand, within HMPREF1078_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 838,198 + HMPREF1078_RS03565 0.63 +0.6 838,250 - HMPREF1078_RS03565 0.66 +1.2 838,250 - HMPREF1078_RS03565 0.66 +1.2 838,251 + HMPREF1078_RS03565 0.66 -1.6 838,251 + HMPREF1078_RS03565 0.66 -0.0 838,252 - HMPREF1078_RS03565 0.66 +1.7 838,252 - HMPREF1078_RS03565 0.66 -1.4 838,252 - HMPREF1078_RS03565 0.66 +1.6 838,299 + HMPREF1078_RS03565 0.69 -0.4 838,299 + HMPREF1078_RS03565 0.69 -1.9 838,299 + HMPREF1078_RS03565 0.69 -0.0 838,300 - HMPREF1078_RS03565 0.69 +0.6 838,300 - HMPREF1078_RS03565 0.69 +1.8 838,300 - HMPREF1078_RS03565 0.69 -1.2 838,300 - HMPREF1078_RS03565 0.69 -1.1 838,341 + HMPREF1078_RS03565 0.71 -1.2 838,450 - HMPREF1078_RS03565 0.77 -1.7 838,475 - HMPREF1078_RS03565 0.78 -2.3 838,476 + HMPREF1078_RS03565 0.78 -1.6 838,476 + HMPREF1078_RS03565 0.78 -1.0 838,477 - HMPREF1078_RS03565 0.78 -1.4 838,505 + HMPREF1078_RS03565 0.80 +2.8 838,505 + HMPREF1078_RS03565 0.80 -0.0 838,525 - HMPREF1078_RS03565 0.81 +0.6 838,767 - +1.0 838,771 - -4.4 838,793 + +1.6 838,812 - -1.0 838,888 + -1.4 838,909 + +0.8 838,943 + -1.2 838,944 - -1.2 838,964 + +0.5 838,980 + +0.1 838,996 + +0.1 838,999 + +0.3 839,000 - -1.1 839,049 - +0.3 839,054 + -0.4 839,055 - +0.2 839,056 + +1.6 839,070 - -0.0 839,072 + +1.6 839,073 - -0.4 839,079 + +1.4 839,079 + -2.1 839,094 - +0.8 839,094 - -1.9 839,094 - -1.0 839,122 + HMPREF1078_RS20060 0.28 +0.6 839,123 - HMPREF1078_RS20060 0.29 -1.0 839,149 - HMPREF1078_RS20060 0.48 +0.6 839,162 + HMPREF1078_RS20060 0.58 -1.0 839,162 + HMPREF1078_RS20060 0.58 +0.6 839,163 - HMPREF1078_RS20060 0.59 -2.1 839,163 - HMPREF1078_RS20060 0.59 -2.2 839,166 + HMPREF1078_RS20060 0.61 -1.0 839,166 + HMPREF1078_RS20060 0.61 +1.0 839,166 + HMPREF1078_RS20060 0.61 +1.6 839,167 - HMPREF1078_RS20060 0.61 -0.4 839,167 - HMPREF1078_RS20060 0.61 -1.7 839,167 - HMPREF1078_RS20060 0.61 -1.2 839,176 + HMPREF1078_RS20060 0.68 -0.4 839,177 - HMPREF1078_RS20060 0.69 -0.2 839,180 - HMPREF1078_RS20060 0.71 -0.0 839,228 + +3.2 839,228 + -0.0 839,228 + -1.1 839,228 + +0.5 839,228 + +1.0 839,228 + +0.9 839,229 - +0.6 839,229 - -1.3 839,229 - +1.4 839,229 - -0.8 839,229 - +2.1 839,229 - -0.4 839,259 + +0.6 839,260 - -0.5 839,260 - +2.1 839,260 - +0.7 839,272 + +1.6 839,282 - +0.5 839,283 + -2.7 839,283 + +0.3 839,283 + -1.0 839,283 + -0.1 839,284 - -2.7 839,284 - -0.0 839,284 - +0.4 839,296 - +1.6 839,296 - +1.6 839,299 + -0.7 839,299 + +3.9 839,300 - -0.7 839,300 - +0.9 839,300 - +1.6 839,316 - -1.9 839,331 - -0.5 839,331 - -0.5 839,350 - +0.3 839,360 + -2.2 839,360 + -1.7 839,399 - -0.6 839,399 - -1.2 839,424 - -1.2 839,430 - +0.8 839,430 - +1.6 839,430 - -1.2 839,430 - -0.4 839,673 + -0.8 839,683 + -1.9 839,690 + -0.4 839,796 + HMPREF1078_RS03570 0.14 -0.4 839,959 - HMPREF1078_RS03570 0.41 +0.5 839,965 + HMPREF1078_RS03570 0.42 -1.0 839,965 + HMPREF1078_RS03570 0.42 -1.4 839,965 + HMPREF1078_RS03570 0.42 -0.4 839,972 - HMPREF1078_RS03570 0.44 -1.2 839,978 + HMPREF1078_RS03570 0.45 -2.8 840,024 + HMPREF1078_RS03570 0.52 -0.4 840,053 - HMPREF1078_RS03570 0.57 -1.0 840,053 - HMPREF1078_RS03570 0.57 +1.4 840,057 - HMPREF1078_RS03570 0.58 -0.7 840,057 - HMPREF1078_RS03570 0.58 +0.4 840,100 + HMPREF1078_RS03570 0.65 -0.1 840,101 - HMPREF1078_RS03570 0.65 +1.6 840,158 + HMPREF1078_RS03570 0.75 -0.7 840,159 - HMPREF1078_RS03570 0.75 -2.0 840,159 - HMPREF1078_RS03570 0.75 -0.1 840,160 + HMPREF1078_RS03570 0.75 -0.2 840,161 - HMPREF1078_RS03570 0.76 -0.7 840,186 + HMPREF1078_RS03570 0.80 +2.9 840,212 - HMPREF1078_RS03570 0.84 -1.0 840,213 + HMPREF1078_RS03570 0.84 -2.7 840,213 + HMPREF1078_RS03570 0.84 -0.7 840,214 - HMPREF1078_RS03570 0.85 -1.5 840,217 + HMPREF1078_RS03570 0.85 -0.0 840,218 - HMPREF1078_RS03570 0.85 +0.6 840,218 - HMPREF1078_RS03570 0.85 -0.0
Or see this region's nucleotide sequence