Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11855 and HMPREF1078_RS11860 are separated by 328 nucleotides HMPREF1078_RS11860 and HMPREF1078_RS11865 are separated by 137 nucleotides
HMPREF1078_RS11855: HMPREF1078_RS11855 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 313,652 to 316,312
_RS11855
HMPREF1078_RS11860: HMPREF1078_RS11860 - family 20 glycosylhydrolase, at 316,641 to 318,692
_RS11860
HMPREF1078_RS11865: HMPREF1078_RS11865 - RagB/SusD family nutrient uptake outer membrane protein, at 318,830 to 320,380
_RS11865
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 315.731 kb on - strand, within HMPREF1078_RS11855 at 315.772 kb on - strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.777 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.054 kb on + strand at 316.080 kb on + strand at 316.162 kb on + strand at 316.300 kb on + strand at 316.315 kb on + strand at 316.321 kb on + strand at 316.321 kb on + strand at 316.326 kb on - strand at 316.339 kb on - strand at 316.345 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.381 kb on + strand at 316.408 kb on - strand at 316.427 kb on + strand at 316.428 kb on - strand at 316.476 kb on - strand at 316.601 kb on + strand at 316.602 kb on - strand at 316.642 kb on + strand at 316.687 kb on + strand at 316.691 kb on - strand at 316.940 kb on - strand, within HMPREF1078_RS11860 at 316.964 kb on + strand, within HMPREF1078_RS11860 at 316.965 kb on - strand, within HMPREF1078_RS11860 at 316.977 kb on + strand, within HMPREF1078_RS11860 at 317.063 kb on + strand, within HMPREF1078_RS11860 at 317.112 kb on - strand, within HMPREF1078_RS11860 at 317.242 kb on + strand, within HMPREF1078_RS11860 at 317.441 kb on + strand, within HMPREF1078_RS11860 at 317.519 kb on - strand, within HMPREF1078_RS11860 at 317.579 kb on - strand, within HMPREF1078_RS11860 at 317.579 kb on - strand, within HMPREF1078_RS11860 at 317.682 kb on + strand, within HMPREF1078_RS11860 at 317.683 kb on - strand, within HMPREF1078_RS11860 at 317.727 kb on - strand, within HMPREF1078_RS11860 at 317.917 kb on + strand, within HMPREF1078_RS11860 at 317.917 kb on + strand, within HMPREF1078_RS11860 at 317.918 kb on - strand, within HMPREF1078_RS11860 at 318.168 kb on - strand, within HMPREF1078_RS11860 at 318.199 kb on + strand, within HMPREF1078_RS11860 at 318.199 kb on + strand, within HMPREF1078_RS11860 at 318.347 kb on - strand, within HMPREF1078_RS11860 at 318.389 kb on + strand, within HMPREF1078_RS11860 at 318.390 kb on - strand, within HMPREF1078_RS11860 at 318.390 kb on - strand, within HMPREF1078_RS11860 at 318.410 kb on - strand, within HMPREF1078_RS11860 at 318.410 kb on - strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.471 kb on - strand, within HMPREF1078_RS11860 at 318.512 kb on + strand at 318.563 kb on + strand at 318.670 kb on - strand at 318.675 kb on + strand at 318.684 kb on + strand at 318.685 kb on - strand at 318.697 kb on + strand at 318.697 kb on + strand at 318.697 kb on + strand at 318.702 kb on + strand at 318.771 kb on - strand at 318.802 kb on - strand at 318.807 kb on - strand at 318.809 kb on + strand at 318.809 kb on + strand at 318.810 kb on - strand at 318.814 kb on - strand at 318.855 kb on - strand at 318.884 kb on + strand at 318.884 kb on + strand at 318.885 kb on - strand at 318.886 kb on + strand at 318.886 kb on + strand at 318.887 kb on - strand at 318.891 kb on + strand at 318.895 kb on - strand at 318.900 kb on + strand at 318.910 kb on + strand at 318.911 kb on - strand at 318.956 kb on - strand at 318.967 kb on + strand at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.090 kb on - strand, within HMPREF1078_RS11865 at 319.090 kb on - strand, within HMPREF1078_RS11865 at 319.168 kb on - strand, within HMPREF1078_RS11865 at 319.200 kb on + strand, within HMPREF1078_RS11865 at 319.200 kb on - strand, within HMPREF1078_RS11865 at 319.287 kb on + strand, within HMPREF1078_RS11865 at 319.288 kb on - strand, within HMPREF1078_RS11865 at 319.292 kb on - strand, within HMPREF1078_RS11865 at 319.338 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.417 kb on - strand, within HMPREF1078_RS11865 at 319.541 kb on - strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.648 kb on - strand, within HMPREF1078_RS11865
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 315,731 - HMPREF1078_RS11855 0.78 -0.7 315,772 - HMPREF1078_RS11855 0.80 -0.9 315,775 + HMPREF1078_RS11855 0.80 +0.2 315,775 + HMPREF1078_RS11855 0.80 +0.8 315,775 + HMPREF1078_RS11855 0.80 -1.4 315,776 - HMPREF1078_RS11855 0.80 -1.6 315,776 - HMPREF1078_RS11855 0.80 -0.6 315,777 + HMPREF1078_RS11855 0.80 -0.8 315,961 + HMPREF1078_RS11855 0.87 -2.9 315,961 + HMPREF1078_RS11855 0.87 -1.1 316,015 + HMPREF1078_RS11855 0.89 -1.0 316,015 + HMPREF1078_RS11855 0.89 -1.9 316,054 + +0.2 316,080 + -0.9 316,162 + -2.6 316,300 + -0.3 316,315 + -4.7 316,321 + +0.1 316,321 + -1.5 316,326 - +1.3 316,339 - -1.1 316,345 + -0.2 316,347 + +1.5 316,347 + +0.6 316,347 + -0.1 316,347 + -1.5 316,348 - +0.5 316,348 - +1.1 316,348 - +0.9 316,381 + -0.2 316,408 - +0.2 316,427 + -1.4 316,428 - +3.3 316,476 - -1.1 316,601 + -1.1 316,602 - -0.5 316,642 + -0.1 316,687 + +0.2 316,691 - -1.4 316,940 - HMPREF1078_RS11860 0.15 +1.0 316,964 + HMPREF1078_RS11860 0.16 +0.7 316,965 - HMPREF1078_RS11860 0.16 +0.5 316,977 + HMPREF1078_RS11860 0.16 +3.8 317,063 + HMPREF1078_RS11860 0.21 +1.5 317,112 - HMPREF1078_RS11860 0.23 -1.5 317,242 + HMPREF1078_RS11860 0.29 +2.2 317,441 + HMPREF1078_RS11860 0.39 +0.6 317,519 - HMPREF1078_RS11860 0.43 -1.5 317,579 - HMPREF1078_RS11860 0.46 -0.7 317,579 - HMPREF1078_RS11860 0.46 -1.3 317,682 + HMPREF1078_RS11860 0.51 -0.5 317,683 - HMPREF1078_RS11860 0.51 +0.7 317,727 - HMPREF1078_RS11860 0.53 -0.2 317,917 + HMPREF1078_RS11860 0.62 -0.1 317,917 + HMPREF1078_RS11860 0.62 +0.7 317,918 - HMPREF1078_RS11860 0.62 +1.2 318,168 - HMPREF1078_RS11860 0.74 +1.9 318,199 + HMPREF1078_RS11860 0.76 +1.3 318,199 + HMPREF1078_RS11860 0.76 -1.1 318,347 - HMPREF1078_RS11860 0.83 -0.9 318,389 + HMPREF1078_RS11860 0.85 +0.2 318,390 - HMPREF1078_RS11860 0.85 +3.9 318,390 - HMPREF1078_RS11860 0.85 +0.2 318,410 - HMPREF1078_RS11860 0.86 +0.1 318,410 - HMPREF1078_RS11860 0.86 -0.1 318,470 + HMPREF1078_RS11860 0.89 +0.7 318,470 + HMPREF1078_RS11860 0.89 -0.9 318,470 + HMPREF1078_RS11860 0.89 -2.6 318,471 - HMPREF1078_RS11860 0.89 -0.7 318,512 + -3.2 318,563 + +2.8 318,670 - -1.4 318,675 + +1.5 318,684 + +0.3 318,685 - -0.1 318,697 + +0.4 318,697 + -1.2 318,697 + +1.1 318,702 + -0.9 318,771 - +0.2 318,802 - -2.0 318,807 - +0.4 318,809 + -3.3 318,809 + -1.6 318,810 - -0.0 318,814 - -2.0 318,855 - +0.4 318,884 + +4.3 318,884 + -0.3 318,885 - +0.1 318,886 + +0.5 318,886 + +1.4 318,887 - -1.0 318,891 + -1.4 318,895 - +0.1 318,900 + +1.4 318,910 + -2.3 318,911 - +2.4 318,956 - +1.1 318,967 + -0.7 319,072 - HMPREF1078_RS11865 0.16 -3.2 319,072 - HMPREF1078_RS11865 0.16 -0.7 319,072 - HMPREF1078_RS11865 0.16 -1.0 319,090 - HMPREF1078_RS11865 0.17 +0.3 319,090 - HMPREF1078_RS11865 0.17 -1.9 319,168 - HMPREF1078_RS11865 0.22 +0.7 319,200 + HMPREF1078_RS11865 0.24 +1.4 319,200 - HMPREF1078_RS11865 0.24 +0.8 319,287 + HMPREF1078_RS11865 0.29 -2.3 319,288 - HMPREF1078_RS11865 0.30 +1.4 319,292 - HMPREF1078_RS11865 0.30 -2.6 319,338 + HMPREF1078_RS11865 0.33 +1.4 319,342 + HMPREF1078_RS11865 0.33 +0.2 319,342 + HMPREF1078_RS11865 0.33 +0.6 319,342 + HMPREF1078_RS11865 0.33 +0.3 319,342 + HMPREF1078_RS11865 0.33 -1.4 319,342 + HMPREF1078_RS11865 0.33 +0.1 319,342 + HMPREF1078_RS11865 0.33 -1.4 319,343 - HMPREF1078_RS11865 0.33 -1.4 319,343 - HMPREF1078_RS11865 0.33 +0.8 319,343 - HMPREF1078_RS11865 0.33 -2.1 319,343 - HMPREF1078_RS11865 0.33 -1.7 319,343 - HMPREF1078_RS11865 0.33 -2.0 319,417 - HMPREF1078_RS11865 0.38 -2.1 319,541 - HMPREF1078_RS11865 0.46 -1.1 319,645 + HMPREF1078_RS11865 0.53 -2.5 319,645 + HMPREF1078_RS11865 0.53 -0.9 319,645 + HMPREF1078_RS11865 0.53 -0.7 319,645 + HMPREF1078_RS11865 0.53 -0.9 319,645 + HMPREF1078_RS11865 0.53 -0.4 319,646 - HMPREF1078_RS11865 0.53 -0.6 319,646 - HMPREF1078_RS11865 0.53 -1.3 319,646 - HMPREF1078_RS11865 0.53 +0.2 319,646 - HMPREF1078_RS11865 0.53 +1.7 319,648 - HMPREF1078_RS11865 0.53 -3.6
Or see this region's nucleotide sequence