Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03455 and HMPREF1078_RS03460 are separated by 275 nucleotides HMPREF1078_RS03460 and HMPREF1078_RS03465 are separated by 106 nucleotides
HMPREF1078_RS03455: HMPREF1078_RS03455 - hypothetical protein, at 814,848 to 815,384
_RS03455
HMPREF1078_RS03460: HMPREF1078_RS03460 - BamA/TamA family outer membrane protein, at 815,660 to 816,934
_RS03460
HMPREF1078_RS03465: HMPREF1078_RS03465 - DUF5686 and carboxypeptidase-like regulatory domain-containing protein, at 817,041 to 819,596
_RS03465
Position (kb) 815
816
817 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 814.695 kb on + strand at 814.695 kb on + strand at 814.696 kb on - strand at 814.696 kb on - strand at 814.698 kb on - strand at 814.698 kb on - strand at 814.756 kb on + strand at 814.756 kb on + strand at 814.756 kb on + strand at 814.776 kb on + strand at 814.776 kb on + strand at 814.777 kb on - strand at 814.777 kb on - strand at 814.795 kb on + strand at 814.795 kb on + strand at 814.796 kb on - strand at 814.846 kb on - strand at 814.853 kb on + strand at 814.853 kb on + strand at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.904 kb on + strand, within HMPREF1078_RS03455 at 814.904 kb on + strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.906 kb on + strand, within HMPREF1078_RS03455 at 814.907 kb on - strand, within HMPREF1078_RS03455 at 814.915 kb on + strand, within HMPREF1078_RS03455 at 814.916 kb on - strand, within HMPREF1078_RS03455 at 814.917 kb on + strand, within HMPREF1078_RS03455 at 814.917 kb on + strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.952 kb on + strand, within HMPREF1078_RS03455 at 814.952 kb on + strand, within HMPREF1078_RS03455 at 814.953 kb on - strand, within HMPREF1078_RS03455 at 814.954 kb on + strand, within HMPREF1078_RS03455 at 814.955 kb on - strand, within HMPREF1078_RS03455 at 814.971 kb on - strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.034 kb on - strand, within HMPREF1078_RS03455 at 815.034 kb on - strand, within HMPREF1078_RS03455 at 815.076 kb on - strand, within HMPREF1078_RS03455 at 815.091 kb on - strand, within HMPREF1078_RS03455 at 815.129 kb on - strand, within HMPREF1078_RS03455 at 815.141 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.183 kb on + strand, within HMPREF1078_RS03455 at 815.183 kb on + strand, within HMPREF1078_RS03455 at 815.184 kb on - strand, within HMPREF1078_RS03455 at 815.184 kb on - strand, within HMPREF1078_RS03455 at 815.185 kb on + strand, within HMPREF1078_RS03455 at 815.250 kb on - strand, within HMPREF1078_RS03455 at 815.271 kb on + strand, within HMPREF1078_RS03455 at 815.331 kb on + strand at 815.442 kb on + strand at 815.443 kb on - strand at 815.443 kb on - strand at 815.443 kb on - strand at 815.481 kb on + strand at 815.514 kb on + strand at 815.514 kb on + strand at 815.514 kb on + strand at 815.514 kb on + strand at 815.515 kb on - strand at 815.551 kb on + strand at 815.551 kb on + strand at 815.557 kb on + strand at 815.558 kb on - strand at 815.563 kb on + strand at 815.564 kb on - strand at 815.649 kb on - strand at 815.666 kb on - strand at 815.666 kb on - strand at 815.671 kb on + strand at 815.698 kb on - strand at 815.782 kb on + strand at 815.849 kb on + strand, within HMPREF1078_RS03460 at 815.896 kb on - strand, within HMPREF1078_RS03460 at 815.925 kb on - strand, within HMPREF1078_RS03460 at 815.926 kb on + strand, within HMPREF1078_RS03460 at 815.926 kb on + strand, within HMPREF1078_RS03460 at 815.926 kb on + strand, within HMPREF1078_RS03460 at 815.926 kb on + strand, within HMPREF1078_RS03460 at 815.926 kb on + strand, within HMPREF1078_RS03460 at 815.995 kb on + strand, within HMPREF1078_RS03460 at 816.057 kb on + strand, within HMPREF1078_RS03460 at 816.058 kb on - strand, within HMPREF1078_RS03460 at 816.101 kb on - strand, within HMPREF1078_RS03460 at 816.105 kb on - strand, within HMPREF1078_RS03460 at 816.106 kb on + strand, within HMPREF1078_RS03460 at 816.106 kb on + strand, within HMPREF1078_RS03460 at 816.113 kb on + strand, within HMPREF1078_RS03460 at 816.114 kb on - strand, within HMPREF1078_RS03460 at 816.114 kb on - strand, within HMPREF1078_RS03460 at 816.143 kb on + strand, within HMPREF1078_RS03460 at 816.212 kb on + strand, within HMPREF1078_RS03460 at 816.224 kb on + strand, within HMPREF1078_RS03460 at 816.356 kb on + strand, within HMPREF1078_RS03460 at 816.356 kb on + strand, within HMPREF1078_RS03460 at 816.383 kb on - strand, within HMPREF1078_RS03460 at 816.390 kb on - strand, within HMPREF1078_RS03460 at 816.419 kb on - strand, within HMPREF1078_RS03460 at 816.435 kb on + strand, within HMPREF1078_RS03460 at 816.435 kb on + strand, within HMPREF1078_RS03460 at 816.436 kb on - strand, within HMPREF1078_RS03460 at 816.436 kb on - strand, within HMPREF1078_RS03460 at 816.442 kb on + strand, within HMPREF1078_RS03460 at 816.460 kb on + strand, within HMPREF1078_RS03460 at 816.465 kb on - strand, within HMPREF1078_RS03460 at 816.480 kb on - strand, within HMPREF1078_RS03460 at 816.480 kb on - strand, within HMPREF1078_RS03460 at 816.481 kb on + strand, within HMPREF1078_RS03460 at 816.482 kb on - strand, within HMPREF1078_RS03460 at 816.486 kb on - strand, within HMPREF1078_RS03460 at 816.526 kb on - strand, within HMPREF1078_RS03460 at 816.526 kb on - strand, within HMPREF1078_RS03460 at 816.593 kb on - strand, within HMPREF1078_RS03460 at 816.638 kb on + strand, within HMPREF1078_RS03460 at 816.638 kb on + strand, within HMPREF1078_RS03460 at 816.638 kb on + strand, within HMPREF1078_RS03460 at 816.638 kb on + strand, within HMPREF1078_RS03460 at 816.638 kb on + strand, within HMPREF1078_RS03460 at 816.640 kb on + strand, within HMPREF1078_RS03460 at 816.640 kb on + strand, within HMPREF1078_RS03460 at 816.641 kb on - strand, within HMPREF1078_RS03460 at 816.694 kb on + strand, within HMPREF1078_RS03460 at 816.695 kb on - strand, within HMPREF1078_RS03460 at 816.695 kb on - strand, within HMPREF1078_RS03460 at 816.908 kb on + strand at 816.917 kb on - strand at 816.958 kb on + strand at 816.960 kb on + strand at 816.965 kb on + strand at 816.965 kb on + strand at 816.976 kb on + strand at 816.977 kb on - strand at 817.036 kb on + strand at 817.040 kb on - strand at 817.107 kb on - strand at 817.116 kb on + strand at 817.117 kb on - strand at 817.120 kb on + strand at 817.121 kb on - strand at 817.121 kb on - strand at 817.121 kb on - strand at 817.146 kb on - strand at 817.173 kb on - strand at 817.174 kb on + strand at 817.174 kb on + strand at 817.175 kb on - strand at 817.196 kb on - strand at 817.216 kb on + strand at 817.217 kb on - strand at 817.287 kb on + strand at 817.348 kb on + strand, within HMPREF1078_RS03465 at 817.351 kb on + strand, within HMPREF1078_RS03465 at 817.351 kb on + strand, within HMPREF1078_RS03465 at 817.373 kb on - strand, within HMPREF1078_RS03465 at 817.486 kb on - strand, within HMPREF1078_RS03465 at 817.505 kb on + strand, within HMPREF1078_RS03465 at 817.505 kb on + strand, within HMPREF1078_RS03465 at 817.570 kb on + strand, within HMPREF1078_RS03465 at 817.576 kb on + strand, within HMPREF1078_RS03465 at 817.608 kb on + strand, within HMPREF1078_RS03465 at 817.608 kb on + strand, within HMPREF1078_RS03465 at 817.609 kb on - strand, within HMPREF1078_RS03465 at 817.662 kb on - strand, within HMPREF1078_RS03465 at 817.722 kb on - strand, within HMPREF1078_RS03465 at 817.722 kb on - strand, within HMPREF1078_RS03465 at 817.726 kb on + strand, within HMPREF1078_RS03465 at 817.726 kb on + strand, within HMPREF1078_RS03465 at 817.727 kb on - strand, within HMPREF1078_RS03465 at 817.780 kb on + strand, within HMPREF1078_RS03465 at 817.784 kb on - strand, within HMPREF1078_RS03465 at 817.835 kb on + strand, within HMPREF1078_RS03465 at 817.836 kb on - strand, within HMPREF1078_RS03465 at 817.837 kb on + strand, within HMPREF1078_RS03465 at 817.837 kb on + strand, within HMPREF1078_RS03465 at 817.837 kb on + strand, within HMPREF1078_RS03465 at 817.838 kb on - strand, within HMPREF1078_RS03465 at 817.849 kb on + strand, within HMPREF1078_RS03465 at 817.850 kb on - strand, within HMPREF1078_RS03465 at 817.852 kb on + strand, within HMPREF1078_RS03465 at 817.852 kb on + strand, within HMPREF1078_RS03465 at 817.852 kb on + strand, within HMPREF1078_RS03465 at 817.852 kb on + strand, within HMPREF1078_RS03465 at 817.876 kb on + strand, within HMPREF1078_RS03465 at 817.877 kb on - strand, within HMPREF1078_RS03465 at 817.919 kb on + strand, within HMPREF1078_RS03465 at 817.919 kb on + strand, within HMPREF1078_RS03465 at 817.920 kb on - strand, within HMPREF1078_RS03465 at 817.920 kb on - strand, within HMPREF1078_RS03465 at 817.920 kb on - strand, within HMPREF1078_RS03465 at 817.920 kb on - strand, within HMPREF1078_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 814,695 + -1.2 814,695 + -1.6 814,696 - -0.7 814,696 - -2.6 814,698 - -0.6 814,698 - -0.0 814,756 + +0.2 814,756 + +1.6 814,756 + -2.2 814,776 + -0.4 814,776 + -2.2 814,777 - +0.2 814,777 - -2.2 814,795 + +1.2 814,795 + -0.1 814,796 - +0.6 814,846 - -1.6 814,853 + -0.0 814,853 + +1.6 814,903 - HMPREF1078_RS03455 0.10 +1.6 814,903 - HMPREF1078_RS03455 0.10 +0.3 814,903 - HMPREF1078_RS03455 0.10 +0.8 814,903 - HMPREF1078_RS03455 0.10 -0.0 814,903 - HMPREF1078_RS03455 0.10 +1.6 814,904 + HMPREF1078_RS03455 0.10 +1.9 814,904 + HMPREF1078_RS03455 0.10 +1.6 814,905 - HMPREF1078_RS03455 0.11 +1.2 814,905 - HMPREF1078_RS03455 0.11 +0.2 814,905 - HMPREF1078_RS03455 0.11 -0.7 814,906 + HMPREF1078_RS03455 0.11 +1.4 814,907 - HMPREF1078_RS03455 0.11 -2.1 814,915 + HMPREF1078_RS03455 0.12 +0.8 814,916 - HMPREF1078_RS03455 0.13 -2.1 814,917 + HMPREF1078_RS03455 0.13 -2.0 814,917 + HMPREF1078_RS03455 0.13 -0.6 814,918 - HMPREF1078_RS03455 0.13 +1.3 814,918 - HMPREF1078_RS03455 0.13 -0.5 814,918 - HMPREF1078_RS03455 0.13 +0.6 814,918 - HMPREF1078_RS03455 0.13 +0.2 814,918 - HMPREF1078_RS03455 0.13 -1.7 814,952 + HMPREF1078_RS03455 0.19 -2.8 814,952 + HMPREF1078_RS03455 0.19 +0.4 814,953 - HMPREF1078_RS03455 0.20 +0.4 814,954 + HMPREF1078_RS03455 0.20 +0.6 814,955 - HMPREF1078_RS03455 0.20 +1.0 814,971 - HMPREF1078_RS03455 0.23 +0.1 815,011 + HMPREF1078_RS03455 0.30 -1.3 815,011 + HMPREF1078_RS03455 0.30 +0.4 815,011 + HMPREF1078_RS03455 0.30 -0.9 815,034 - HMPREF1078_RS03455 0.35 +1.6 815,034 - HMPREF1078_RS03455 0.35 -0.4 815,076 - HMPREF1078_RS03455 0.42 +1.6 815,091 - HMPREF1078_RS03455 0.45 +0.4 815,129 - HMPREF1078_RS03455 0.52 -2.6 815,141 - HMPREF1078_RS03455 0.55 -0.7 815,180 - HMPREF1078_RS03455 0.62 -0.2 815,180 - HMPREF1078_RS03455 0.62 -2.5 815,180 - HMPREF1078_RS03455 0.62 -1.5 815,180 - HMPREF1078_RS03455 0.62 -0.6 815,180 - HMPREF1078_RS03455 0.62 -2.1 815,183 + HMPREF1078_RS03455 0.62 -1.1 815,183 + HMPREF1078_RS03455 0.62 +2.6 815,184 - HMPREF1078_RS03455 0.63 -0.0 815,184 - HMPREF1078_RS03455 0.63 -0.4 815,185 + HMPREF1078_RS03455 0.63 -0.4 815,250 - HMPREF1078_RS03455 0.75 -2.0 815,271 + HMPREF1078_RS03455 0.79 -0.5 815,331 + -0.4 815,442 + -2.3 815,443 - -1.4 815,443 - +1.3 815,443 - -0.4 815,481 + +2.8 815,514 + -0.7 815,514 + -0.9 815,514 + -0.2 815,514 + -2.8 815,515 - -0.0 815,551 + -0.0 815,551 + -0.7 815,557 + -0.4 815,558 - -0.2 815,563 + -1.6 815,564 - +0.3 815,649 - -2.1 815,666 - +0.6 815,666 - -1.7 815,671 + +1.2 815,698 - -1.9 815,782 + +0.6 815,849 + HMPREF1078_RS03460 0.15 -0.4 815,896 - HMPREF1078_RS03460 0.19 +1.6 815,925 - HMPREF1078_RS03460 0.21 -2.9 815,926 + HMPREF1078_RS03460 0.21 +1.4 815,926 + HMPREF1078_RS03460 0.21 -1.2 815,926 + HMPREF1078_RS03460 0.21 +0.6 815,926 + HMPREF1078_RS03460 0.21 -1.0 815,926 + HMPREF1078_RS03460 0.21 +0.3 815,995 + HMPREF1078_RS03460 0.26 -1.3 816,057 + HMPREF1078_RS03460 0.31 -1.7 816,058 - HMPREF1078_RS03460 0.31 -1.0 816,101 - HMPREF1078_RS03460 0.35 -0.8 816,105 - HMPREF1078_RS03460 0.35 -1.4 816,106 + HMPREF1078_RS03460 0.35 -1.7 816,106 + HMPREF1078_RS03460 0.35 -0.0 816,113 + HMPREF1078_RS03460 0.36 +0.6 816,114 - HMPREF1078_RS03460 0.36 -1.3 816,114 - HMPREF1078_RS03460 0.36 -1.3 816,143 + HMPREF1078_RS03460 0.38 +0.6 816,212 + HMPREF1078_RS03460 0.43 -0.2 816,224 + HMPREF1078_RS03460 0.44 -1.3 816,356 + HMPREF1078_RS03460 0.55 -2.2 816,356 + HMPREF1078_RS03460 0.55 -0.4 816,383 - HMPREF1078_RS03460 0.57 +1.9 816,390 - HMPREF1078_RS03460 0.57 -1.9 816,419 - HMPREF1078_RS03460 0.60 -0.4 816,435 + HMPREF1078_RS03460 0.61 +0.7 816,435 + HMPREF1078_RS03460 0.61 -1.0 816,436 - HMPREF1078_RS03460 0.61 +0.4 816,436 - HMPREF1078_RS03460 0.61 +0.4 816,442 + HMPREF1078_RS03460 0.61 -0.3 816,460 + HMPREF1078_RS03460 0.63 -1.6 816,465 - HMPREF1078_RS03460 0.63 -0.0 816,480 - HMPREF1078_RS03460 0.64 -0.7 816,480 - HMPREF1078_RS03460 0.64 +3.2 816,481 + HMPREF1078_RS03460 0.64 +0.6 816,482 - HMPREF1078_RS03460 0.64 -0.7 816,486 - HMPREF1078_RS03460 0.65 +1.4 816,526 - HMPREF1078_RS03460 0.68 -0.0 816,526 - HMPREF1078_RS03460 0.68 -2.2 816,593 - HMPREF1078_RS03460 0.73 -2.1 816,638 + HMPREF1078_RS03460 0.77 +1.0 816,638 + HMPREF1078_RS03460 0.77 +0.4 816,638 + HMPREF1078_RS03460 0.77 -2.5 816,638 + HMPREF1078_RS03460 0.77 -2.4 816,638 + HMPREF1078_RS03460 0.77 +1.3 816,640 + HMPREF1078_RS03460 0.77 +0.2 816,640 + HMPREF1078_RS03460 0.77 -1.5 816,641 - HMPREF1078_RS03460 0.77 -1.4 816,694 + HMPREF1078_RS03460 0.81 +0.8 816,695 - HMPREF1078_RS03460 0.81 -2.6 816,695 - HMPREF1078_RS03460 0.81 -1.7 816,908 + -1.9 816,917 - +1.6 816,958 + -0.7 816,960 + +1.0 816,965 + +0.6 816,965 + -2.7 816,976 + -2.7 816,977 - -0.4 817,036 + -0.0 817,040 - -0.6 817,107 - +0.6 817,116 + -3.8 817,117 - -0.4 817,120 + +1.5 817,121 - +0.1 817,121 - -0.7 817,121 - +0.2 817,146 - -2.9 817,173 - +1.6 817,174 + -1.2 817,174 + +0.7 817,175 - -1.9 817,196 - -1.2 817,216 + -1.9 817,217 - -1.0 817,287 + -1.9 817,348 + HMPREF1078_RS03465 0.12 -1.4 817,351 + HMPREF1078_RS03465 0.12 -1.2 817,351 + HMPREF1078_RS03465 0.12 -1.6 817,373 - HMPREF1078_RS03465 0.13 -1.0 817,486 - HMPREF1078_RS03465 0.17 +0.1 817,505 + HMPREF1078_RS03465 0.18 +0.5 817,505 + HMPREF1078_RS03465 0.18 +1.8 817,570 + HMPREF1078_RS03465 0.21 -0.8 817,576 + HMPREF1078_RS03465 0.21 -0.0 817,608 + HMPREF1078_RS03465 0.22 -0.5 817,608 + HMPREF1078_RS03465 0.22 -0.1 817,609 - HMPREF1078_RS03465 0.22 +1.6 817,662 - HMPREF1078_RS03465 0.24 +0.9 817,722 - HMPREF1078_RS03465 0.27 -1.5 817,722 - HMPREF1078_RS03465 0.27 -0.6 817,726 + HMPREF1078_RS03465 0.27 -1.2 817,726 + HMPREF1078_RS03465 0.27 +0.1 817,727 - HMPREF1078_RS03465 0.27 -1.2 817,780 + HMPREF1078_RS03465 0.29 +0.4 817,784 - HMPREF1078_RS03465 0.29 -0.0 817,835 + HMPREF1078_RS03465 0.31 +0.6 817,836 - HMPREF1078_RS03465 0.31 -1.4 817,837 + HMPREF1078_RS03465 0.31 -1.0 817,837 + HMPREF1078_RS03465 0.31 -0.4 817,837 + HMPREF1078_RS03465 0.31 +0.6 817,838 - HMPREF1078_RS03465 0.31 -2.9 817,849 + HMPREF1078_RS03465 0.32 +0.9 817,850 - HMPREF1078_RS03465 0.32 -0.7 817,852 + HMPREF1078_RS03465 0.32 +2.4 817,852 + HMPREF1078_RS03465 0.32 +0.8 817,852 + HMPREF1078_RS03465 0.32 -2.7 817,852 + HMPREF1078_RS03465 0.32 +1.3 817,876 + HMPREF1078_RS03465 0.33 -2.2 817,877 - HMPREF1078_RS03465 0.33 +1.6 817,919 + HMPREF1078_RS03465 0.34 -1.4 817,919 + HMPREF1078_RS03465 0.34 -0.3 817,920 - HMPREF1078_RS03465 0.34 -0.0 817,920 - HMPREF1078_RS03465 0.34 +0.4 817,920 - HMPREF1078_RS03465 0.34 -0.0 817,920 - HMPREF1078_RS03465 0.34 -1.4
Or see this region's nucleotide sequence