Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03240 and HMPREF1078_RS03245 are separated by 11 nucleotides HMPREF1078_RS03245 and HMPREF1078_RS03250 are separated by 83 nucleotides HMPREF1078_RS03250 and HMPREF1078_RS03255 are separated by 132 nucleotides
HMPREF1078_RS03240: HMPREF1078_RS03240 - DNA mismatch repair protein MutS, at 767,776 to 769,095
_RS03240
HMPREF1078_RS03245: HMPREF1078_RS03245 - DUF4099 domain-containing protein, at 769,107 to 769,892
_RS03245
HMPREF1078_RS03250: HMPREF1078_RS03250 - glucosaminidase domain-containing protein, at 769,976 to 770,611
_RS03250
HMPREF1078_RS03255: HMPREF1078_RS03255 - hypothetical protein, at 770,744 to 772,552
_RS03255
Position (kb) 769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 768.977 kb on + strand at 768.978 kb on - strand at 768.987 kb on - strand at 768.995 kb on + strand at 769.116 kb on - strand at 769.259 kb on - strand, within HMPREF1078_RS03245 at 769.304 kb on + strand, within HMPREF1078_RS03245 at 769.304 kb on + strand, within HMPREF1078_RS03245 at 769.431 kb on + strand, within HMPREF1078_RS03245 at 769.522 kb on + strand, within HMPREF1078_RS03245 at 769.523 kb on - strand, within HMPREF1078_RS03245 at 769.563 kb on + strand, within HMPREF1078_RS03245 at 769.564 kb on - strand, within HMPREF1078_RS03245 at 769.566 kb on + strand, within HMPREF1078_RS03245 at 769.566 kb on + strand, within HMPREF1078_RS03245 at 769.659 kb on + strand, within HMPREF1078_RS03245 at 769.660 kb on - strand, within HMPREF1078_RS03245 at 769.660 kb on - strand, within HMPREF1078_RS03245 at 769.660 kb on - strand, within HMPREF1078_RS03245 at 769.662 kb on - strand, within HMPREF1078_RS03245 at 769.688 kb on + strand, within HMPREF1078_RS03245 at 769.698 kb on + strand, within HMPREF1078_RS03245 at 769.716 kb on - strand, within HMPREF1078_RS03245 at 769.716 kb on - strand, within HMPREF1078_RS03245 at 769.746 kb on + strand, within HMPREF1078_RS03245 at 769.804 kb on - strand, within HMPREF1078_RS03245 at 769.836 kb on + strand at 769.860 kb on + strand at 769.895 kb on + strand at 769.905 kb on - strand at 770.013 kb on + strand at 770.042 kb on + strand, within HMPREF1078_RS03250 at 770.043 kb on - strand, within HMPREF1078_RS03250 at 770.096 kb on + strand, within HMPREF1078_RS03250 at 770.097 kb on - strand, within HMPREF1078_RS03250 at 770.098 kb on + strand, within HMPREF1078_RS03250 at 770.099 kb on - strand, within HMPREF1078_RS03250 at 770.120 kb on - strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.293 kb on + strand, within HMPREF1078_RS03250 at 770.294 kb on - strand, within HMPREF1078_RS03250 at 770.311 kb on + strand, within HMPREF1078_RS03250 at 770.312 kb on - strand, within HMPREF1078_RS03250 at 770.337 kb on + strand, within HMPREF1078_RS03250 at 770.367 kb on + strand, within HMPREF1078_RS03250 at 770.397 kb on + strand, within HMPREF1078_RS03250 at 770.398 kb on - strand, within HMPREF1078_RS03250 at 770.413 kb on + strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.429 kb on - strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.453 kb on + strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.573 kb on + strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.578 kb on + strand at 770.579 kb on - strand at 770.581 kb on + strand at 770.582 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.599 kb on - strand at 770.604 kb on + strand at 770.604 kb on + strand at 770.608 kb on - strand at 770.610 kb on - strand at 770.610 kb on - strand at 770.627 kb on + strand at 770.627 kb on + strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.667 kb on + strand at 770.668 kb on - strand at 770.720 kb on - strand at 770.720 kb on - strand at 770.724 kb on + strand at 770.728 kb on + strand at 770.728 kb on + strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.738 kb on + strand at 770.739 kb on - strand at 770.786 kb on - strand at 770.786 kb on - strand at 770.890 kb on - strand at 770.948 kb on - strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.984 kb on + strand, within HMPREF1078_RS03255 at 771.017 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.164 kb on + strand, within HMPREF1078_RS03255 at 771.188 kb on - strand, within HMPREF1078_RS03255 at 771.208 kb on - strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.249 kb on - strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.411 kb on + strand, within HMPREF1078_RS03255 at 771.412 kb on - strand, within HMPREF1078_RS03255 at 771.503 kb on + strand, within HMPREF1078_RS03255 at 771.537 kb on - strand, within HMPREF1078_RS03255 at 771.541 kb on + strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.589 kb on + strand, within HMPREF1078_RS03255 at 771.592 kb on + strand, within HMPREF1078_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 768,977 + -1.6 768,978 - +0.7 768,987 - +0.5 768,995 + -1.1 769,116 - +0.9 769,259 - HMPREF1078_RS03245 0.19 +1.5 769,304 + HMPREF1078_RS03245 0.25 -0.1 769,304 + HMPREF1078_RS03245 0.25 +1.5 769,431 + HMPREF1078_RS03245 0.41 +0.7 769,522 + HMPREF1078_RS03245 0.53 +0.7 769,523 - HMPREF1078_RS03245 0.53 +3.5 769,563 + HMPREF1078_RS03245 0.58 -1.0 769,564 - HMPREF1078_RS03245 0.58 -0.2 769,566 + HMPREF1078_RS03245 0.58 +0.8 769,566 + HMPREF1078_RS03245 0.58 -0.3 769,659 + HMPREF1078_RS03245 0.70 +0.9 769,660 - HMPREF1078_RS03245 0.70 +0.9 769,660 - HMPREF1078_RS03245 0.70 -0.9 769,660 - HMPREF1078_RS03245 0.70 -0.1 769,662 - HMPREF1078_RS03245 0.71 -1.1 769,688 + HMPREF1078_RS03245 0.74 -0.3 769,698 + HMPREF1078_RS03245 0.75 +2.9 769,716 - HMPREF1078_RS03245 0.77 +2.9 769,716 - HMPREF1078_RS03245 0.77 +1.1 769,746 + HMPREF1078_RS03245 0.81 +3.5 769,804 - HMPREF1078_RS03245 0.89 -0.2 769,836 + +0.0 769,860 + -1.6 769,895 + -1.3 769,905 - -0.5 770,013 + -0.6 770,042 + HMPREF1078_RS03250 0.10 -2.2 770,043 - HMPREF1078_RS03250 0.11 -0.3 770,096 + HMPREF1078_RS03250 0.19 -0.8 770,097 - HMPREF1078_RS03250 0.19 -0.5 770,098 + HMPREF1078_RS03250 0.19 -1.3 770,099 - HMPREF1078_RS03250 0.19 +1.4 770,120 - HMPREF1078_RS03250 0.23 -1.1 770,266 + HMPREF1078_RS03250 0.46 -0.5 770,266 + HMPREF1078_RS03250 0.46 -0.3 770,293 + HMPREF1078_RS03250 0.50 -0.8 770,294 - HMPREF1078_RS03250 0.50 -1.5 770,311 + HMPREF1078_RS03250 0.53 -1.3 770,312 - HMPREF1078_RS03250 0.53 +1.9 770,337 + HMPREF1078_RS03250 0.57 -0.3 770,367 + HMPREF1078_RS03250 0.61 +0.5 770,397 + HMPREF1078_RS03250 0.66 +0.5 770,398 - HMPREF1078_RS03250 0.66 -1.8 770,413 + HMPREF1078_RS03250 0.69 +0.5 770,414 - HMPREF1078_RS03250 0.69 +0.4 770,414 - HMPREF1078_RS03250 0.69 +0.3 770,429 - HMPREF1078_RS03250 0.71 -1.3 770,440 + HMPREF1078_RS03250 0.73 -0.5 770,440 + HMPREF1078_RS03250 0.73 -0.8 770,451 - HMPREF1078_RS03250 0.75 +2.3 770,451 - HMPREF1078_RS03250 0.75 -0.6 770,453 + HMPREF1078_RS03250 0.75 -1.1 770,516 - HMPREF1078_RS03250 0.85 -0.1 770,516 - HMPREF1078_RS03250 0.85 -0.3 770,573 + -0.1 770,574 - -1.0 770,574 - -0.1 770,574 - +1.0 770,578 + -1.6 770,579 - +1.5 770,581 + +1.5 770,582 - -0.2 770,596 - -0.5 770,596 - -0.8 770,596 - -1.5 770,596 - -0.5 770,596 - -0.8 770,596 - -0.3 770,599 - +1.1 770,604 + +1.5 770,604 + -0.8 770,608 - -2.1 770,610 - +0.5 770,610 - -0.9 770,627 + -2.5 770,627 + +0.9 770,663 - -1.3 770,663 - +0.4 770,663 - +0.7 770,667 + -2.6 770,668 - -1.9 770,720 - -3.1 770,720 - +0.3 770,724 + +0.3 770,728 + -0.5 770,728 + -0.6 770,729 - -0.5 770,729 - -0.1 770,729 - -0.1 770,729 - -2.3 770,729 - -2.1 770,729 - +0.2 770,729 - -1.5 770,729 - +1.9 770,738 + +0.0 770,739 - -0.2 770,786 - +0.3 770,786 - -1.3 770,890 - +1.1 770,948 - HMPREF1078_RS03255 0.11 -0.1 770,956 + HMPREF1078_RS03255 0.12 -1.6 770,956 + HMPREF1078_RS03255 0.12 -2.2 770,957 - HMPREF1078_RS03255 0.12 -1.6 770,957 - HMPREF1078_RS03255 0.12 -2.8 770,984 + HMPREF1078_RS03255 0.13 +1.2 771,017 + HMPREF1078_RS03255 0.15 +0.1 771,089 + HMPREF1078_RS03255 0.19 -1.5 771,089 + HMPREF1078_RS03255 0.19 -0.1 771,089 + HMPREF1078_RS03255 0.19 -0.5 771,090 - HMPREF1078_RS03255 0.19 +0.5 771,090 - HMPREF1078_RS03255 0.19 -1.3 771,164 + HMPREF1078_RS03255 0.23 +1.3 771,188 - HMPREF1078_RS03255 0.25 +1.5 771,208 - HMPREF1078_RS03255 0.26 -1.1 771,248 + HMPREF1078_RS03255 0.28 +2.3 771,248 + HMPREF1078_RS03255 0.28 -2.3 771,249 - HMPREF1078_RS03255 0.28 -2.2 771,253 + HMPREF1078_RS03255 0.28 -0.8 771,253 + HMPREF1078_RS03255 0.28 -1.0 771,290 + HMPREF1078_RS03255 0.30 -0.1 771,290 + HMPREF1078_RS03255 0.30 -0.1 771,411 + HMPREF1078_RS03255 0.37 -1.0 771,412 - HMPREF1078_RS03255 0.37 -1.3 771,503 + HMPREF1078_RS03255 0.42 -2.5 771,537 - HMPREF1078_RS03255 0.44 -0.1 771,541 + HMPREF1078_RS03255 0.44 -1.3 771,581 - HMPREF1078_RS03255 0.46 +1.1 771,581 - HMPREF1078_RS03255 0.46 +1.5 771,581 - HMPREF1078_RS03255 0.46 -2.3 771,582 + HMPREF1078_RS03255 0.46 +0.5 771,582 + HMPREF1078_RS03255 0.46 -0.5 771,589 + HMPREF1078_RS03255 0.47 -0.1 771,592 + HMPREF1078_RS03255 0.47 +0.5
Or see this region's nucleotide sequence