Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12855 and HMPREF1078_RS12860 are separated by 221 nucleotides HMPREF1078_RS12860 and HMPREF1078_RS12865 are separated by 129 nucleotides HMPREF1078_RS12865 and HMPREF1078_RS12870 are separated by 536 nucleotides
HMPREF1078_RS12855: HMPREF1078_RS12855 - DUF4974 domain-containing protein, at 604,383 to 605,369
_RS12855
HMPREF1078_RS12860: HMPREF1078_RS12860 - RNA polymerase sigma-70 factor, at 605,591 to 606,166
_RS12860
HMPREF1078_RS12865: HMPREF1078_RS12865 - S41 family peptidase, at 606,296 to 609,547
_RS12865
HMPREF1078_RS12870: HMPREF1078_RS12870 - lysine exporter LysO family protein, at 610,084 to 610,710
_RS12870
Position (kb) 606
607
608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 605.359 kb on - strand at 605.391 kb on + strand at 605.392 kb on - strand at 605.392 kb on - strand at 605.392 kb on - strand at 605.392 kb on - strand at 605.403 kb on + strand at 605.429 kb on + strand at 605.429 kb on + strand at 605.444 kb on - strand at 605.466 kb on + strand at 605.466 kb on + strand at 605.466 kb on + strand at 605.467 kb on - strand at 605.467 kb on - strand at 605.574 kb on - strand at 605.593 kb on - strand at 605.594 kb on + strand at 605.594 kb on + strand at 605.594 kb on + strand at 605.595 kb on - strand at 605.620 kb on - strand at 605.780 kb on - strand, within HMPREF1078_RS12860 at 605.780 kb on - strand, within HMPREF1078_RS12860 at 605.814 kb on + strand, within HMPREF1078_RS12860 at 605.817 kb on - strand, within HMPREF1078_RS12860 at 605.837 kb on - strand, within HMPREF1078_RS12860 at 605.867 kb on + strand, within HMPREF1078_RS12860 at 605.867 kb on + strand, within HMPREF1078_RS12860 at 605.868 kb on - strand, within HMPREF1078_RS12860 at 605.868 kb on - strand, within HMPREF1078_RS12860 at 605.871 kb on + strand, within HMPREF1078_RS12860 at 605.871 kb on + strand, within HMPREF1078_RS12860 at 605.872 kb on - strand, within HMPREF1078_RS12860 at 606.014 kb on + strand, within HMPREF1078_RS12860 at 606.019 kb on + strand, within HMPREF1078_RS12860 at 606.066 kb on + strand, within HMPREF1078_RS12860 at 606.066 kb on + strand, within HMPREF1078_RS12860 at 606.066 kb on + strand, within HMPREF1078_RS12860 at 606.067 kb on - strand, within HMPREF1078_RS12860 at 606.067 kb on - strand, within HMPREF1078_RS12860 at 606.081 kb on + strand, within HMPREF1078_RS12860 at 606.082 kb on - strand, within HMPREF1078_RS12860 at 606.085 kb on + strand, within HMPREF1078_RS12860 at 606.085 kb on + strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.086 kb on - strand, within HMPREF1078_RS12860 at 606.090 kb on + strand, within HMPREF1078_RS12860 at 606.090 kb on + strand, within HMPREF1078_RS12860 at 606.090 kb on + strand, within HMPREF1078_RS12860 at 606.090 kb on + strand, within HMPREF1078_RS12860 at 606.090 kb on + strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.091 kb on - strand, within HMPREF1078_RS12860 at 606.097 kb on + strand, within HMPREF1078_RS12860 at 606.097 kb on + strand, within HMPREF1078_RS12860 at 606.134 kb on + strand at 606.134 kb on + strand at 606.135 kb on - strand at 606.137 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.146 kb on - strand at 606.150 kb on - strand at 606.163 kb on - strand at 606.167 kb on - strand at 606.199 kb on + strand at 606.212 kb on - strand at 606.220 kb on - strand at 606.227 kb on + strand at 606.230 kb on + strand at 606.233 kb on + strand at 606.233 kb on + strand at 606.234 kb on - strand at 606.240 kb on - strand at 606.275 kb on - strand at 606.327 kb on + strand at 606.430 kb on + strand at 606.434 kb on + strand at 606.435 kb on - strand at 606.471 kb on + strand at 606.471 kb on + strand at 606.493 kb on + strand at 606.789 kb on + strand, within HMPREF1078_RS12865 at 606.820 kb on - strand, within HMPREF1078_RS12865 at 606.820 kb on - strand, within HMPREF1078_RS12865 at 606.821 kb on + strand, within HMPREF1078_RS12865 at 606.989 kb on + strand, within HMPREF1078_RS12865 at 606.992 kb on + strand, within HMPREF1078_RS12865 at 607.021 kb on + strand, within HMPREF1078_RS12865 at 607.021 kb on + strand, within HMPREF1078_RS12865 at 607.062 kb on + strand, within HMPREF1078_RS12865 at 607.073 kb on - strand, within HMPREF1078_RS12865 at 607.073 kb on - strand, within HMPREF1078_RS12865 at 607.185 kb on + strand, within HMPREF1078_RS12865 at 607.305 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.307 kb on + strand, within HMPREF1078_RS12865 at 607.308 kb on - strand, within HMPREF1078_RS12865 at 607.308 kb on - strand, within HMPREF1078_RS12865 at 607.312 kb on - strand, within HMPREF1078_RS12865 at 607.439 kb on + strand, within HMPREF1078_RS12865 at 607.481 kb on + strand, within HMPREF1078_RS12865 at 607.482 kb on - strand, within HMPREF1078_RS12865 at 607.482 kb on - strand, within HMPREF1078_RS12865 at 607.515 kb on + strand, within HMPREF1078_RS12865 at 607.544 kb on + strand, within HMPREF1078_RS12865 at 607.623 kb on + strand, within HMPREF1078_RS12865 at 607.624 kb on - strand, within HMPREF1078_RS12865 at 607.653 kb on - strand, within HMPREF1078_RS12865 at 607.677 kb on - strand, within HMPREF1078_RS12865 at 607.679 kb on + strand, within HMPREF1078_RS12865 at 607.680 kb on - strand, within HMPREF1078_RS12865 at 607.719 kb on - strand, within HMPREF1078_RS12865 at 607.719 kb on - strand, within HMPREF1078_RS12865 at 607.720 kb on + strand, within HMPREF1078_RS12865 at 607.916 kb on + strand, within HMPREF1078_RS12865 at 607.916 kb on + strand, within HMPREF1078_RS12865 at 607.917 kb on - strand, within HMPREF1078_RS12865 at 607.917 kb on - strand, within HMPREF1078_RS12865 at 607.944 kb on - strand, within HMPREF1078_RS12865 at 608.080 kb on + strand, within HMPREF1078_RS12865 at 608.081 kb on - strand, within HMPREF1078_RS12865 at 608.128 kb on + strand, within HMPREF1078_RS12865 at 608.128 kb on + strand, within HMPREF1078_RS12865 at 608.199 kb on - strand, within HMPREF1078_RS12865 at 608.232 kb on + strand, within HMPREF1078_RS12865 at 608.268 kb on + strand, within HMPREF1078_RS12865 at 608.436 kb on - strand, within HMPREF1078_RS12865 at 608.437 kb on + strand, within HMPREF1078_RS12865 at 608.439 kb on + strand, within HMPREF1078_RS12865 at 608.439 kb on + strand, within HMPREF1078_RS12865 at 608.439 kb on + strand, within HMPREF1078_RS12865 at 608.464 kb on - strand, within HMPREF1078_RS12865 at 608.490 kb on + strand, within HMPREF1078_RS12865 at 608.491 kb on - strand, within HMPREF1078_RS12865 at 608.555 kb on - strand, within HMPREF1078_RS12865 at 608.781 kb on + strand, within HMPREF1078_RS12865 at 608.781 kb on + strand, within HMPREF1078_RS12865 at 608.813 kb on + strand, within HMPREF1078_RS12865 at 608.813 kb on + strand, within HMPREF1078_RS12865 at 608.816 kb on + strand, within HMPREF1078_RS12865 at 608.827 kb on - strand, within HMPREF1078_RS12865 at 608.853 kb on + strand, within HMPREF1078_RS12865 at 608.854 kb on - strand, within HMPREF1078_RS12865 at 609.006 kb on + strand, within HMPREF1078_RS12865 at 609.006 kb on + strand, within HMPREF1078_RS12865 at 609.006 kb on + strand, within HMPREF1078_RS12865 at 609.006 kb on + strand, within HMPREF1078_RS12865 at 609.006 kb on + strand, within HMPREF1078_RS12865 at 609.007 kb on - strand, within HMPREF1078_RS12865 at 609.007 kb on - strand, within HMPREF1078_RS12865 at 609.007 kb on - strand, within HMPREF1078_RS12865 at 609.047 kb on + strand, within HMPREF1078_RS12865 at 609.060 kb on + strand, within HMPREF1078_RS12865 at 609.161 kb on + strand, within HMPREF1078_RS12865 at 609.161 kb on + strand, within HMPREF1078_RS12865 at 609.162 kb on - strand, within HMPREF1078_RS12865 at 609.162 kb on - strand, within HMPREF1078_RS12865 at 609.162 kb on - strand, within HMPREF1078_RS12865 at 609.162 kb on - strand, within HMPREF1078_RS12865 at 609.234 kb on + strand at 609.234 kb on + strand at 609.235 kb on - strand at 609.254 kb on + strand at 609.284 kb on + strand at 609.286 kb on + strand at 609.286 kb on + strand at 609.287 kb on - strand at 609.287 kb on - strand at 609.409 kb on + strand at 609.409 kb on + strand at 609.410 kb on - strand at 609.410 kb on - strand at 609.462 kb on - strand at 609.484 kb on - strand at 609.484 kb on - strand at 609.537 kb on + strand at 609.549 kb on - strand at 609.551 kb on + strand at 609.624 kb on + strand at 609.624 kb on + strand at 609.624 kb on + strand at 609.629 kb on - strand at 609.629 kb on - strand at 609.647 kb on + strand at 609.710 kb on - strand at 609.710 kb on - strand at 609.720 kb on + strand at 609.756 kb on + strand at 609.756 kb on + strand at 609.757 kb on - strand at 609.760 kb on + strand at 609.760 kb on + strand at 609.760 kb on + strand at 609.761 kb on - strand at 609.778 kb on + strand at 609.779 kb on - strand at 609.848 kb on + strand at 609.857 kb on + strand at 609.862 kb on + strand at 610.081 kb on + strand at 610.123 kb on - strand at 610.234 kb on - strand, within HMPREF1078_RS12870 at 610.234 kb on - strand, within HMPREF1078_RS12870 at 610.288 kb on - strand, within HMPREF1078_RS12870 at 610.288 kb on - strand, within HMPREF1078_RS12870 at 610.327 kb on + strand, within HMPREF1078_RS12870 at 610.543 kb on - strand, within HMPREF1078_RS12870
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 605,359 - -1.5 605,391 + +2.2 605,392 - -0.8 605,392 - +2.6 605,392 - +0.8 605,392 - -2.2 605,403 + -0.8 605,429 + -1.4 605,429 + +1.6 605,444 - -1.8 605,466 + -0.1 605,466 + +1.2 605,466 + -0.4 605,467 - -1.1 605,467 - -0.7 605,574 - -0.2 605,593 - -1.0 605,594 + +0.0 605,594 + +0.8 605,594 + -0.7 605,595 - +2.3 605,620 - +0.3 605,780 - HMPREF1078_RS12860 0.33 +1.8 605,780 - HMPREF1078_RS12860 0.33 -2.2 605,814 + HMPREF1078_RS12860 0.39 -1.1 605,817 - HMPREF1078_RS12860 0.39 -0.7 605,837 - HMPREF1078_RS12860 0.43 +1.2 605,867 + HMPREF1078_RS12860 0.48 +0.4 605,867 + HMPREF1078_RS12860 0.48 -0.3 605,868 - HMPREF1078_RS12860 0.48 -0.6 605,868 - HMPREF1078_RS12860 0.48 -1.8 605,871 + HMPREF1078_RS12860 0.49 +0.8 605,871 + HMPREF1078_RS12860 0.49 +0.9 605,872 - HMPREF1078_RS12860 0.49 -0.1 606,014 + HMPREF1078_RS12860 0.73 -0.9 606,019 + HMPREF1078_RS12860 0.74 -0.3 606,066 + HMPREF1078_RS12860 0.82 -1.4 606,066 + HMPREF1078_RS12860 0.82 -0.1 606,066 + HMPREF1078_RS12860 0.82 +2.8 606,067 - HMPREF1078_RS12860 0.83 +0.8 606,067 - HMPREF1078_RS12860 0.83 -1.1 606,081 + HMPREF1078_RS12860 0.85 -2.2 606,082 - HMPREF1078_RS12860 0.85 -2.1 606,085 + HMPREF1078_RS12860 0.86 -0.2 606,085 + HMPREF1078_RS12860 0.86 -2.2 606,086 - HMPREF1078_RS12860 0.86 +0.2 606,086 - HMPREF1078_RS12860 0.86 +0.7 606,086 - HMPREF1078_RS12860 0.86 -2.2 606,086 - HMPREF1078_RS12860 0.86 +2.6 606,086 - HMPREF1078_RS12860 0.86 -1.2 606,086 - HMPREF1078_RS12860 0.86 +0.6 606,090 + HMPREF1078_RS12860 0.87 -0.7 606,090 + HMPREF1078_RS12860 0.87 +1.4 606,090 + HMPREF1078_RS12860 0.87 -1.2 606,090 + HMPREF1078_RS12860 0.87 -0.1 606,090 + HMPREF1078_RS12860 0.87 +0.4 606,091 - HMPREF1078_RS12860 0.87 +0.1 606,091 - HMPREF1078_RS12860 0.87 -0.4 606,091 - HMPREF1078_RS12860 0.87 -0.2 606,091 - HMPREF1078_RS12860 0.87 +1.8 606,091 - HMPREF1078_RS12860 0.87 -0.8 606,091 - HMPREF1078_RS12860 0.87 -1.1 606,091 - HMPREF1078_RS12860 0.87 +0.2 606,091 - HMPREF1078_RS12860 0.87 +0.8 606,097 + HMPREF1078_RS12860 0.88 -0.1 606,097 + HMPREF1078_RS12860 0.88 +3.1 606,134 + +0.2 606,134 + +0.8 606,135 - +1.3 606,137 - -0.2 606,139 + -1.6 606,140 - +1.8 606,146 - -2.8 606,150 - +0.3 606,163 - +0.0 606,167 - -0.2 606,199 + -1.3 606,212 - -2.2 606,220 - -1.8 606,227 + -1.9 606,230 + -0.2 606,233 + +0.2 606,233 + +1.6 606,234 - -2.0 606,240 - -2.6 606,275 - -0.6 606,327 + +1.8 606,430 + +0.8 606,434 + -2.9 606,435 - -1.1 606,471 + -0.5 606,471 + -0.4 606,493 + +0.2 606,789 + HMPREF1078_RS12865 0.15 -0.2 606,820 - HMPREF1078_RS12865 0.16 -1.6 606,820 - HMPREF1078_RS12865 0.16 -0.9 606,821 + HMPREF1078_RS12865 0.16 -0.6 606,989 + HMPREF1078_RS12865 0.21 +0.7 606,992 + HMPREF1078_RS12865 0.21 +0.4 607,021 + HMPREF1078_RS12865 0.22 +1.8 607,021 + HMPREF1078_RS12865 0.22 -3.6 607,062 + HMPREF1078_RS12865 0.24 +0.4 607,073 - HMPREF1078_RS12865 0.24 -1.9 607,073 - HMPREF1078_RS12865 0.24 +1.1 607,185 + HMPREF1078_RS12865 0.27 -0.8 607,305 + HMPREF1078_RS12865 0.31 -0.8 607,307 + HMPREF1078_RS12865 0.31 -1.0 607,307 + HMPREF1078_RS12865 0.31 -0.6 607,307 + HMPREF1078_RS12865 0.31 -0.1 607,307 + HMPREF1078_RS12865 0.31 -0.6 607,307 + HMPREF1078_RS12865 0.31 -0.2 607,307 + HMPREF1078_RS12865 0.31 +0.8 607,308 - HMPREF1078_RS12865 0.31 -0.2 607,308 - HMPREF1078_RS12865 0.31 -0.9 607,312 - HMPREF1078_RS12865 0.31 +0.2 607,439 + HMPREF1078_RS12865 0.35 -0.3 607,481 + HMPREF1078_RS12865 0.36 -1.3 607,482 - HMPREF1078_RS12865 0.36 -1.4 607,482 - HMPREF1078_RS12865 0.36 -0.4 607,515 + HMPREF1078_RS12865 0.37 -1.8 607,544 + HMPREF1078_RS12865 0.38 +0.2 607,623 + HMPREF1078_RS12865 0.41 +1.8 607,624 - HMPREF1078_RS12865 0.41 -0.4 607,653 - HMPREF1078_RS12865 0.42 -1.4 607,677 - HMPREF1078_RS12865 0.42 +0.7 607,679 + HMPREF1078_RS12865 0.43 +1.2 607,680 - HMPREF1078_RS12865 0.43 +1.2 607,719 - HMPREF1078_RS12865 0.44 +4.3 607,719 - HMPREF1078_RS12865 0.44 -0.7 607,720 + HMPREF1078_RS12865 0.44 -1.1 607,916 + HMPREF1078_RS12865 0.50 -0.6 607,916 + HMPREF1078_RS12865 0.50 -0.2 607,917 - HMPREF1078_RS12865 0.50 -0.8 607,917 - HMPREF1078_RS12865 0.50 +0.3 607,944 - HMPREF1078_RS12865 0.51 -0.6 608,080 + HMPREF1078_RS12865 0.55 -0.8 608,081 - HMPREF1078_RS12865 0.55 -0.0 608,128 + HMPREF1078_RS12865 0.56 -1.2 608,128 + HMPREF1078_RS12865 0.56 -1.8 608,199 - HMPREF1078_RS12865 0.59 -1.4 608,232 + HMPREF1078_RS12865 0.60 -1.2 608,268 + HMPREF1078_RS12865 0.61 -0.0 608,436 - HMPREF1078_RS12865 0.66 +0.2 608,437 + HMPREF1078_RS12865 0.66 +0.9 608,439 + HMPREF1078_RS12865 0.66 +1.2 608,439 + HMPREF1078_RS12865 0.66 -0.6 608,439 + HMPREF1078_RS12865 0.66 -0.7 608,464 - HMPREF1078_RS12865 0.67 +1.8 608,490 + HMPREF1078_RS12865 0.67 -0.3 608,491 - HMPREF1078_RS12865 0.67 +0.3 608,555 - HMPREF1078_RS12865 0.69 +1.2 608,781 + HMPREF1078_RS12865 0.76 -2.1 608,781 + HMPREF1078_RS12865 0.76 +0.3 608,813 + HMPREF1078_RS12865 0.77 -1.9 608,813 + HMPREF1078_RS12865 0.77 -1.3 608,816 + HMPREF1078_RS12865 0.77 -0.6 608,827 - HMPREF1078_RS12865 0.78 +0.3 608,853 + HMPREF1078_RS12865 0.79 -0.1 608,854 - HMPREF1078_RS12865 0.79 -2.3 609,006 + HMPREF1078_RS12865 0.83 -1.1 609,006 + HMPREF1078_RS12865 0.83 +1.8 609,006 + HMPREF1078_RS12865 0.83 -2.1 609,006 + HMPREF1078_RS12865 0.83 +0.5 609,006 + HMPREF1078_RS12865 0.83 -1.0 609,007 - HMPREF1078_RS12865 0.83 +1.0 609,007 - HMPREF1078_RS12865 0.83 +1.3 609,007 - HMPREF1078_RS12865 0.83 -0.2 609,047 + HMPREF1078_RS12865 0.85 -1.1 609,060 + HMPREF1078_RS12865 0.85 -2.7 609,161 + HMPREF1078_RS12865 0.88 -1.5 609,161 + HMPREF1078_RS12865 0.88 -2.5 609,162 - HMPREF1078_RS12865 0.88 +0.3 609,162 - HMPREF1078_RS12865 0.88 -1.0 609,162 - HMPREF1078_RS12865 0.88 -1.0 609,162 - HMPREF1078_RS12865 0.88 -0.8 609,234 + -2.6 609,234 + -1.4 609,235 - -1.2 609,254 + +1.1 609,284 + -0.8 609,286 + +0.8 609,286 + +0.2 609,287 - +1.0 609,287 - -1.2 609,409 + +0.9 609,409 + -0.3 609,410 - +0.8 609,410 - -2.1 609,462 - -1.1 609,484 - +1.2 609,484 - +0.2 609,537 + -0.6 609,549 - +0.5 609,551 + -1.2 609,624 + -0.3 609,624 + -0.6 609,624 + -0.7 609,629 - -1.9 609,629 - +0.4 609,647 + +0.2 609,710 - +0.4 609,710 - +1.8 609,720 + +0.2 609,756 + -1.2 609,756 + +0.0 609,757 - -1.2 609,760 + +3.8 609,760 + -0.2 609,760 + -2.2 609,761 - -3.0 609,778 + -0.9 609,779 - +0.1 609,848 + +0.2 609,857 + -0.7 609,862 + +0.6 610,081 + -0.0 610,123 - +0.4 610,234 - HMPREF1078_RS12870 0.24 +0.3 610,234 - HMPREF1078_RS12870 0.24 -0.1 610,288 - HMPREF1078_RS12870 0.33 +0.4 610,288 - HMPREF1078_RS12870 0.33 +1.4 610,327 + HMPREF1078_RS12870 0.39 +1.8 610,543 - HMPREF1078_RS12870 0.73 +1.3
Or see this region's nucleotide sequence