Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS18790 and HMPREF1078_RS11850 overlap by 63 nucleotides HMPREF1078_RS11850 and HMPREF1078_RS11855 are separated by 157 nucleotides HMPREF1078_RS11855 and HMPREF1078_RS11860 are separated by 328 nucleotides
HMPREF1078_RS18790: HMPREF1078_RS18790 - DUF86 domain-containing protein, at 312,616 to 312,816
_RS18790
HMPREF1078_RS11850: HMPREF1078_RS11850 - glycoside hydrolase family 16 protein, at 312,754 to 313,494
_RS11850
HMPREF1078_RS11855: HMPREF1078_RS11855 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 313,652 to 316,312
_RS11855
HMPREF1078_RS11860: HMPREF1078_RS11860 - family 20 glycosylhydrolase, at 316,641 to 318,692
_RS11860
Position (kb) 313
314
315
316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 312.674 kb on + strand, within HMPREF1078_RS18790 at 312.675 kb on - strand, within HMPREF1078_RS18790 at 312.677 kb on + strand, within HMPREF1078_RS18790 at 312.678 kb on - strand, within HMPREF1078_RS18790 at 312.678 kb on - strand, within HMPREF1078_RS18790 at 312.681 kb on + strand, within HMPREF1078_RS18790 at 312.682 kb on - strand, within HMPREF1078_RS18790 at 312.732 kb on - strand, within HMPREF1078_RS18790 at 312.923 kb on + strand, within HMPREF1078_RS11850 at 312.930 kb on - strand, within HMPREF1078_RS11850 at 312.979 kb on + strand, within HMPREF1078_RS11850 at 312.987 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.065 kb on - strand, within HMPREF1078_RS11850 at 313.065 kb on - strand, within HMPREF1078_RS11850 at 313.095 kb on + strand, within HMPREF1078_RS11850 at 313.096 kb on - strand, within HMPREF1078_RS11850 at 313.101 kb on + strand, within HMPREF1078_RS11850 at 313.197 kb on - strand, within HMPREF1078_RS11850 at 313.252 kb on - strand, within HMPREF1078_RS11850 at 313.253 kb on + strand, within HMPREF1078_RS11850 at 313.306 kb on + strand, within HMPREF1078_RS11850 at 313.339 kb on - strand, within HMPREF1078_RS11850 at 313.341 kb on + strand, within HMPREF1078_RS11850 at 313.341 kb on + strand, within HMPREF1078_RS11850 at 313.342 kb on - strand, within HMPREF1078_RS11850 at 313.344 kb on - strand, within HMPREF1078_RS11850 at 313.344 kb on - strand, within HMPREF1078_RS11850 at 313.365 kb on + strand, within HMPREF1078_RS11850 at 313.365 kb on + strand, within HMPREF1078_RS11850 at 313.366 kb on - strand, within HMPREF1078_RS11850 at 313.366 kb on - strand, within HMPREF1078_RS11850 at 313.371 kb on + strand, within HMPREF1078_RS11850 at 313.401 kb on + strand, within HMPREF1078_RS11850 at 313.519 kb on + strand at 313.519 kb on + strand at 313.520 kb on - strand at 313.543 kb on + strand at 313.618 kb on + strand at 313.634 kb on + strand at 313.654 kb on - strand at 313.697 kb on - strand at 313.871 kb on + strand at 313.917 kb on - strand at 314.006 kb on + strand, within HMPREF1078_RS11855 at 314.007 kb on - strand, within HMPREF1078_RS11855 at 314.044 kb on + strand, within HMPREF1078_RS11855 at 314.044 kb on + strand, within HMPREF1078_RS11855 at 314.045 kb on - strand, within HMPREF1078_RS11855 at 314.050 kb on + strand, within HMPREF1078_RS11855 at 314.051 kb on - strand, within HMPREF1078_RS11855 at 314.051 kb on - strand, within HMPREF1078_RS11855 at 314.078 kb on - strand, within HMPREF1078_RS11855 at 314.096 kb on + strand, within HMPREF1078_RS11855 at 314.192 kb on - strand, within HMPREF1078_RS11855 at 314.197 kb on + strand, within HMPREF1078_RS11855 at 314.198 kb on - strand, within HMPREF1078_RS11855 at 314.198 kb on - strand, within HMPREF1078_RS11855 at 314.238 kb on + strand, within HMPREF1078_RS11855 at 314.239 kb on - strand, within HMPREF1078_RS11855 at 314.350 kb on + strand, within HMPREF1078_RS11855 at 314.353 kb on - strand, within HMPREF1078_RS11855 at 314.359 kb on - strand, within HMPREF1078_RS11855 at 314.417 kb on + strand, within HMPREF1078_RS11855 at 314.456 kb on - strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.458 kb on - strand, within HMPREF1078_RS11855 at 314.458 kb on - strand, within HMPREF1078_RS11855 at 314.521 kb on + strand, within HMPREF1078_RS11855 at 314.523 kb on + strand, within HMPREF1078_RS11855 at 314.524 kb on - strand, within HMPREF1078_RS11855 at 314.527 kb on - strand, within HMPREF1078_RS11855 at 314.568 kb on + strand, within HMPREF1078_RS11855 at 314.568 kb on + strand, within HMPREF1078_RS11855 at 314.569 kb on - strand, within HMPREF1078_RS11855 at 314.649 kb on + strand, within HMPREF1078_RS11855 at 314.802 kb on + strand, within HMPREF1078_RS11855 at 314.842 kb on + strand, within HMPREF1078_RS11855 at 314.863 kb on - strand, within HMPREF1078_RS11855 at 314.863 kb on - strand, within HMPREF1078_RS11855 at 315.060 kb on + strand, within HMPREF1078_RS11855 at 315.061 kb on - strand, within HMPREF1078_RS11855 at 315.061 kb on - strand, within HMPREF1078_RS11855 at 315.310 kb on - strand, within HMPREF1078_RS11855 at 315.328 kb on - strand, within HMPREF1078_RS11855 at 315.347 kb on - strand, within HMPREF1078_RS11855 at 315.432 kb on + strand, within HMPREF1078_RS11855 at 315.432 kb on + strand, within HMPREF1078_RS11855 at 315.433 kb on - strand, within HMPREF1078_RS11855 at 315.497 kb on - strand, within HMPREF1078_RS11855 at 315.521 kb on + strand, within HMPREF1078_RS11855 at 315.522 kb on - strand, within HMPREF1078_RS11855 at 315.522 kb on - strand, within HMPREF1078_RS11855 at 315.545 kb on + strand, within HMPREF1078_RS11855 at 315.571 kb on + strand, within HMPREF1078_RS11855 at 315.571 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.621 kb on - strand, within HMPREF1078_RS11855 at 315.626 kb on + strand, within HMPREF1078_RS11855 at 315.731 kb on - strand, within HMPREF1078_RS11855 at 315.772 kb on - strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.777 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.054 kb on + strand at 316.080 kb on + strand at 316.162 kb on + strand at 316.300 kb on + strand at 316.315 kb on + strand at 316.321 kb on + strand at 316.321 kb on + strand at 316.326 kb on - strand at 316.339 kb on - strand at 316.345 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.381 kb on + strand at 316.408 kb on - strand at 316.427 kb on + strand at 316.428 kb on - strand at 316.476 kb on - strand at 316.601 kb on + strand at 316.602 kb on - strand at 316.642 kb on + strand at 316.687 kb on + strand at 316.691 kb on - strand at 316.940 kb on - strand, within HMPREF1078_RS11860 at 316.964 kb on + strand, within HMPREF1078_RS11860 at 316.965 kb on - strand, within HMPREF1078_RS11860 at 316.977 kb on + strand, within HMPREF1078_RS11860 at 317.063 kb on + strand, within HMPREF1078_RS11860 at 317.112 kb on - strand, within HMPREF1078_RS11860 at 317.242 kb on + strand, within HMPREF1078_RS11860
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 312,674 + HMPREF1078_RS18790 0.29 -0.1 312,675 - HMPREF1078_RS18790 0.29 +1.7 312,677 + HMPREF1078_RS18790 0.30 -0.0 312,678 - HMPREF1078_RS18790 0.31 +0.1 312,678 - HMPREF1078_RS18790 0.31 +0.7 312,681 + HMPREF1078_RS18790 0.32 +1.0 312,682 - HMPREF1078_RS18790 0.33 -0.3 312,732 - HMPREF1078_RS18790 0.58 -1.5 312,923 + HMPREF1078_RS11850 0.23 -0.6 312,930 - HMPREF1078_RS11850 0.24 +1.1 312,979 + HMPREF1078_RS11850 0.30 -0.2 312,987 - HMPREF1078_RS11850 0.31 -1.4 312,994 - HMPREF1078_RS11850 0.32 +0.8 312,994 - HMPREF1078_RS11850 0.32 +0.2 312,994 - HMPREF1078_RS11850 0.32 +0.2 312,994 - HMPREF1078_RS11850 0.32 +0.2 313,059 - HMPREF1078_RS11850 0.41 +0.6 313,059 - HMPREF1078_RS11850 0.41 +0.9 313,059 - HMPREF1078_RS11850 0.41 +0.7 313,063 - HMPREF1078_RS11850 0.42 -2.6 313,063 - HMPREF1078_RS11850 0.42 +0.7 313,063 - HMPREF1078_RS11850 0.42 -1.1 313,063 - HMPREF1078_RS11850 0.42 -1.6 313,065 - HMPREF1078_RS11850 0.42 -1.9 313,065 - HMPREF1078_RS11850 0.42 -3.4 313,095 + HMPREF1078_RS11850 0.46 -1.5 313,096 - HMPREF1078_RS11850 0.46 -0.8 313,101 + HMPREF1078_RS11850 0.47 -0.6 313,197 - HMPREF1078_RS11850 0.60 +1.0 313,252 - HMPREF1078_RS11850 0.67 -2.5 313,253 + HMPREF1078_RS11850 0.67 +1.0 313,306 + HMPREF1078_RS11850 0.74 +0.3 313,339 - HMPREF1078_RS11850 0.79 +0.5 313,341 + HMPREF1078_RS11850 0.79 +1.1 313,341 + HMPREF1078_RS11850 0.79 -0.6 313,342 - HMPREF1078_RS11850 0.79 -1.5 313,344 - HMPREF1078_RS11850 0.80 -0.6 313,344 - HMPREF1078_RS11850 0.80 -1.1 313,365 + HMPREF1078_RS11850 0.82 -0.1 313,365 + HMPREF1078_RS11850 0.82 -1.4 313,366 - HMPREF1078_RS11850 0.83 +0.6 313,366 - HMPREF1078_RS11850 0.83 -0.2 313,371 + HMPREF1078_RS11850 0.83 +0.5 313,401 + HMPREF1078_RS11850 0.87 -0.8 313,519 + -0.3 313,519 + +0.1 313,520 - +1.8 313,543 + -0.2 313,618 + +0.1 313,634 + -0.9 313,654 - -0.5 313,697 - -0.1 313,871 + -0.9 313,917 - -1.3 314,006 + HMPREF1078_RS11855 0.13 -0.5 314,007 - HMPREF1078_RS11855 0.13 -1.1 314,044 + HMPREF1078_RS11855 0.15 +0.4 314,044 + HMPREF1078_RS11855 0.15 +0.5 314,045 - HMPREF1078_RS11855 0.15 -0.3 314,050 + HMPREF1078_RS11855 0.15 +1.0 314,051 - HMPREF1078_RS11855 0.15 +0.1 314,051 - HMPREF1078_RS11855 0.15 +2.1 314,078 - HMPREF1078_RS11855 0.16 +0.2 314,096 + HMPREF1078_RS11855 0.17 -0.9 314,192 - HMPREF1078_RS11855 0.20 -0.1 314,197 + HMPREF1078_RS11855 0.20 -1.1 314,198 - HMPREF1078_RS11855 0.21 +0.1 314,198 - HMPREF1078_RS11855 0.21 +1.7 314,238 + HMPREF1078_RS11855 0.22 -0.3 314,239 - HMPREF1078_RS11855 0.22 -1.1 314,350 + HMPREF1078_RS11855 0.26 +1.7 314,353 - HMPREF1078_RS11855 0.26 +0.7 314,359 - HMPREF1078_RS11855 0.27 +0.5 314,417 + HMPREF1078_RS11855 0.29 +0.1 314,456 - HMPREF1078_RS11855 0.30 +1.6 314,457 + HMPREF1078_RS11855 0.30 -0.0 314,457 + HMPREF1078_RS11855 0.30 -0.1 314,457 + HMPREF1078_RS11855 0.30 -0.2 314,458 - HMPREF1078_RS11855 0.30 +0.5 314,458 - HMPREF1078_RS11855 0.30 -2.2 314,521 + HMPREF1078_RS11855 0.33 +0.1 314,523 + HMPREF1078_RS11855 0.33 +0.4 314,524 - HMPREF1078_RS11855 0.33 -1.3 314,527 - HMPREF1078_RS11855 0.33 +1.7 314,568 + HMPREF1078_RS11855 0.34 -3.9 314,568 + HMPREF1078_RS11855 0.34 +0.0 314,569 - HMPREF1078_RS11855 0.34 +0.0 314,649 + HMPREF1078_RS11855 0.37 -1.6 314,802 + HMPREF1078_RS11855 0.43 -0.2 314,842 + HMPREF1078_RS11855 0.45 -0.3 314,863 - HMPREF1078_RS11855 0.46 +1.4 314,863 - HMPREF1078_RS11855 0.46 -0.5 315,060 + HMPREF1078_RS11855 0.53 +0.1 315,061 - HMPREF1078_RS11855 0.53 +0.1 315,061 - HMPREF1078_RS11855 0.53 +1.7 315,310 - HMPREF1078_RS11855 0.62 -2.9 315,328 - HMPREF1078_RS11855 0.63 +1.9 315,347 - HMPREF1078_RS11855 0.64 -0.3 315,432 + HMPREF1078_RS11855 0.67 -0.3 315,432 + HMPREF1078_RS11855 0.67 -1.1 315,433 - HMPREF1078_RS11855 0.67 +0.4 315,497 - HMPREF1078_RS11855 0.69 -1.3 315,521 + HMPREF1078_RS11855 0.70 -1.1 315,522 - HMPREF1078_RS11855 0.70 -1.5 315,522 - HMPREF1078_RS11855 0.70 +0.1 315,545 + HMPREF1078_RS11855 0.71 -0.3 315,571 + HMPREF1078_RS11855 0.72 -0.9 315,571 + HMPREF1078_RS11855 0.72 -0.6 315,620 + HMPREF1078_RS11855 0.74 +2.2 315,620 + HMPREF1078_RS11855 0.74 +1.4 315,620 + HMPREF1078_RS11855 0.74 +1.0 315,621 - HMPREF1078_RS11855 0.74 -0.3 315,626 + HMPREF1078_RS11855 0.74 -1.3 315,731 - HMPREF1078_RS11855 0.78 -0.4 315,772 - HMPREF1078_RS11855 0.80 -1.1 315,775 + HMPREF1078_RS11855 0.80 +0.0 315,775 + HMPREF1078_RS11855 0.80 +0.3 315,775 + HMPREF1078_RS11855 0.80 -1.2 315,776 - HMPREF1078_RS11855 0.80 -1.3 315,776 - HMPREF1078_RS11855 0.80 +1.0 315,777 + HMPREF1078_RS11855 0.80 -0.2 315,961 + HMPREF1078_RS11855 0.87 +0.6 315,961 + HMPREF1078_RS11855 0.87 -0.9 316,015 + HMPREF1078_RS11855 0.89 -0.8 316,015 + HMPREF1078_RS11855 0.89 -0.0 316,054 + -1.2 316,080 + +0.2 316,162 + +0.2 316,300 + -0.2 316,315 + -4.4 316,321 + -0.6 316,321 + -0.5 316,326 - +1.9 316,339 - -1.9 316,345 + +0.2 316,347 + +0.2 316,347 + -0.9 316,347 + -1.8 316,347 + +0.3 316,348 - +0.4 316,348 - -0.1 316,348 - -0.9 316,381 + -1.0 316,408 - -0.5 316,427 + +0.0 316,428 - +0.1 316,476 - -1.9 316,601 + +0.7 316,602 - -1.0 316,642 + +1.7 316,687 + -1.6 316,691 - -1.1 316,940 - HMPREF1078_RS11860 0.15 +0.4 316,964 + HMPREF1078_RS11860 0.16 +0.4 316,965 - HMPREF1078_RS11860 0.16 +0.0 316,977 + HMPREF1078_RS11860 0.16 +1.1 317,063 + HMPREF1078_RS11860 0.21 +0.7 317,112 - HMPREF1078_RS11860 0.23 -1.3 317,242 + HMPREF1078_RS11860 0.29 +1.5
Or see this region's nucleotide sequence