Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08990 and HMPREF1078_RS08995 overlap by 22 nucleotides HMPREF1078_RS08995 and HMPREF1078_RS09000 are separated by 421 nucleotides HMPREF1078_RS09000 and HMPREF1078_RS09005 are separated by 2 nucleotides HMPREF1078_RS09005 and HMPREF1078_RS09010 are separated by 2 nucleotides HMPREF1078_RS09010 and HMPREF1078_RS09015 are separated by 16 nucleotides
HMPREF1078_RS08990: HMPREF1078_RS08990 - conjugal transfer protein MobB, at 400,891 to 402,138
_RS08990
HMPREF1078_RS08995: HMPREF1078_RS08995 - conjugal transfer protein MobA, at 402,117 to 402,545
_RS08995
HMPREF1078_RS09000: HMPREF1078_RS09000 - ParA family protein, at 402,967 to 404,016
_RS09000
HMPREF1078_RS09005: HMPREF1078_RS09005 - DUF3408 domain-containing protein, at 404,019 to 404,459
_RS09005
HMPREF1078_RS09010: HMPREF1078_RS09010 - DUF3408 domain-containing protein, at 404,462 to 404,815
_RS09010
HMPREF1078_RS09015: HMPREF1078_RS09015 - hypothetical protein, at 404,832 to 405,560
_RS09015
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.005 kb on - strand, within HMPREF1078_RS08990 at 402.005 kb on - strand, within HMPREF1078_RS08990 at 402.033 kb on - strand at 402.033 kb on - strand at 402.033 kb on - strand at 402.118 kb on + strand at 402.118 kb on + strand at 402.119 kb on - strand at 402.281 kb on - strand, within HMPREF1078_RS08995 at 402.335 kb on - strand, within HMPREF1078_RS08995 at 402.335 kb on - strand, within HMPREF1078_RS08995 at 402.711 kb on - strand at 402.711 kb on - strand at 402.905 kb on - strand at 402.921 kb on - strand at 403.073 kb on - strand, within HMPREF1078_RS09000 at 403.337 kb on - strand, within HMPREF1078_RS09000 at 403.337 kb on - strand, within HMPREF1078_RS09000 at 403.448 kb on - strand, within HMPREF1078_RS09000 at 403.448 kb on - strand, within HMPREF1078_RS09000 at 403.499 kb on - strand, within HMPREF1078_RS09000 at 404.252 kb on - strand, within HMPREF1078_RS09005 at 404.273 kb on - strand, within HMPREF1078_RS09005 at 404.371 kb on - strand, within HMPREF1078_RS09005 at 404.431 kb on - strand at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.592 kb on - strand, within HMPREF1078_RS09010 at 404.623 kb on - strand, within HMPREF1078_RS09010 at 404.649 kb on - strand, within HMPREF1078_RS09010 at 404.675 kb on - strand, within HMPREF1078_RS09010 at 404.675 kb on - strand, within HMPREF1078_RS09010 at 404.727 kb on - strand, within HMPREF1078_RS09010
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 402,004 + HMPREF1078_RS08990 0.89 -0.2 402,004 + HMPREF1078_RS08990 0.89 +2.0 402,004 + HMPREF1078_RS08990 0.89 -1.2 402,005 - HMPREF1078_RS08990 0.89 +0.2 402,005 - HMPREF1078_RS08990 0.89 +0.8 402,033 - +0.9 402,033 - +2.1 402,033 - -0.3 402,118 + -2.1 402,118 + -1.9 402,119 - -0.3 402,281 - HMPREF1078_RS08995 0.38 +0.8 402,335 - HMPREF1078_RS08995 0.51 +0.8 402,335 - HMPREF1078_RS08995 0.51 +0.4 402,711 - +0.8 402,711 - +1.2 402,905 - -1.4 402,921 - -0.8 403,073 - HMPREF1078_RS09000 0.10 -0.5 403,337 - HMPREF1078_RS09000 0.35 +1.2 403,337 - HMPREF1078_RS09000 0.35 -2.5 403,448 - HMPREF1078_RS09000 0.46 -1.1 403,448 - HMPREF1078_RS09000 0.46 -0.2 403,499 - HMPREF1078_RS09000 0.51 -3.1 404,252 - HMPREF1078_RS09005 0.53 +0.7 404,273 - HMPREF1078_RS09005 0.58 -0.2 404,371 - HMPREF1078_RS09005 0.80 -0.2 404,431 - -1.5 404,516 - HMPREF1078_RS09010 0.15 -0.5 404,516 - HMPREF1078_RS09010 0.15 -3.3 404,516 - HMPREF1078_RS09010 0.15 +1.8 404,592 - HMPREF1078_RS09010 0.37 -0.4 404,623 - HMPREF1078_RS09010 0.45 +0.7 404,649 - HMPREF1078_RS09010 0.53 -1.7 404,675 - HMPREF1078_RS09010 0.60 -0.3 404,675 - HMPREF1078_RS09010 0.60 -2.0 404,727 - HMPREF1078_RS09010 0.75 +0.8
Or see this region's nucleotide sequence