Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08955 and HMPREF1078_RS08960 overlap by 8 nucleotides HMPREF1078_RS08960 and HMPREF1078_RS08965 are separated by 279 nucleotides HMPREF1078_RS08965 and HMPREF1078_RS08970 are separated by 238 nucleotides
HMPREF1078_RS08955: HMPREF1078_RS08955 - ATP-binding protein, at 388,828 to 391,146
_RS08955
HMPREF1078_RS08960: HMPREF1078_RS08960 - sigma-54 dependent transcriptional regulator, at 391,139 to 392,461
_RS08960
HMPREF1078_RS08965: HMPREF1078_RS08965 - dihydrofolate reductase family protein, at 392,741 to 393,163
_RS08965
HMPREF1078_RS08970: HMPREF1078_RS08970 - RteC domain-containing protein, at 393,402 to 394,007
_RS08970
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 390.151 kb on - strand, within HMPREF1078_RS08955 at 390.181 kb on - strand, within HMPREF1078_RS08955 at 390.187 kb on - strand, within HMPREF1078_RS08955 at 390.187 kb on - strand, within HMPREF1078_RS08955 at 390.187 kb on - strand, within HMPREF1078_RS08955 at 390.403 kb on - strand, within HMPREF1078_RS08955 at 390.411 kb on + strand, within HMPREF1078_RS08955 at 390.411 kb on + strand, within HMPREF1078_RS08955 at 390.411 kb on + strand, within HMPREF1078_RS08955 at 390.412 kb on - strand, within HMPREF1078_RS08955 at 390.412 kb on - strand, within HMPREF1078_RS08955 at 390.422 kb on - strand, within HMPREF1078_RS08955 at 390.427 kb on - strand, within HMPREF1078_RS08955 at 390.433 kb on - strand, within HMPREF1078_RS08955 at 390.471 kb on - strand, within HMPREF1078_RS08955 at 390.474 kb on - strand, within HMPREF1078_RS08955 at 390.497 kb on - strand, within HMPREF1078_RS08955 at 390.598 kb on - strand, within HMPREF1078_RS08955 at 390.598 kb on - strand, within HMPREF1078_RS08955 at 390.608 kb on + strand, within HMPREF1078_RS08955 at 390.702 kb on + strand, within HMPREF1078_RS08955 at 390.702 kb on + strand, within HMPREF1078_RS08955 at 390.703 kb on - strand, within HMPREF1078_RS08955 at 390.703 kb on - strand, within HMPREF1078_RS08955 at 390.703 kb on - strand, within HMPREF1078_RS08955 at 390.845 kb on - strand, within HMPREF1078_RS08955 at 391.011 kb on - strand at 391.144 kb on + strand at 391.155 kb on + strand at 391.181 kb on + strand at 391.190 kb on + strand at 391.190 kb on + strand at 391.191 kb on - strand at 391.191 kb on - strand at 391.201 kb on + strand at 391.202 kb on - strand at 391.202 kb on - strand at 391.202 kb on - strand at 391.238 kb on + strand at 391.282 kb on + strand, within HMPREF1078_RS08960 at 391.282 kb on + strand, within HMPREF1078_RS08960 at 391.283 kb on - strand, within HMPREF1078_RS08960 at 391.330 kb on - strand, within HMPREF1078_RS08960 at 391.330 kb on - strand, within HMPREF1078_RS08960 at 391.382 kb on - strand, within HMPREF1078_RS08960 at 391.439 kb on + strand, within HMPREF1078_RS08960 at 391.443 kb on - strand, within HMPREF1078_RS08960 at 391.445 kb on - strand, within HMPREF1078_RS08960 at 391.526 kb on - strand, within HMPREF1078_RS08960 at 391.531 kb on + strand, within HMPREF1078_RS08960 at 391.531 kb on + strand, within HMPREF1078_RS08960 at 391.531 kb on + strand, within HMPREF1078_RS08960 at 391.531 kb on + strand, within HMPREF1078_RS08960 at 391.532 kb on - strand, within HMPREF1078_RS08960 at 391.534 kb on - strand, within HMPREF1078_RS08960 at 391.579 kb on - strand, within HMPREF1078_RS08960 at 391.614 kb on + strand, within HMPREF1078_RS08960 at 391.615 kb on - strand, within HMPREF1078_RS08960 at 391.646 kb on - strand, within HMPREF1078_RS08960 at 391.768 kb on + strand, within HMPREF1078_RS08960 at 391.768 kb on + strand, within HMPREF1078_RS08960 at 391.769 kb on - strand, within HMPREF1078_RS08960 at 391.796 kb on + strand, within HMPREF1078_RS08960 at 391.884 kb on + strand, within HMPREF1078_RS08960 at 391.885 kb on - strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.098 kb on + strand, within HMPREF1078_RS08960 at 392.122 kb on + strand, within HMPREF1078_RS08960 at 392.153 kb on - strand, within HMPREF1078_RS08960 at 392.220 kb on + strand, within HMPREF1078_RS08960 at 392.220 kb on + strand, within HMPREF1078_RS08960 at 392.287 kb on + strand, within HMPREF1078_RS08960 at 392.394 kb on + strand at 392.410 kb on - strand at 392.410 kb on - strand at 392.411 kb on + strand at 392.411 kb on + strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.412 kb on - strand at 392.437 kb on + strand at 392.438 kb on - strand at 392.460 kb on - strand at 392.467 kb on - strand at 392.467 kb on - strand at 392.542 kb on + strand at 392.542 kb on + strand at 392.543 kb on - strand at 392.543 kb on - strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.549 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.616 kb on + strand at 392.617 kb on - strand at 392.617 kb on - strand at 392.617 kb on - strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.621 kb on + strand at 392.622 kb on - strand at 392.622 kb on - strand at 392.628 kb on - strand at 392.649 kb on - strand at 392.666 kb on + strand at 392.688 kb on + strand at 392.689 kb on - strand at 392.706 kb on - strand at 392.724 kb on - strand at 392.767 kb on - strand at 392.799 kb on + strand, within HMPREF1078_RS08965 at 392.800 kb on - strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.801 kb on + strand, within HMPREF1078_RS08965 at 392.802 kb on - strand, within HMPREF1078_RS08965 at 392.888 kb on + strand, within HMPREF1078_RS08965 at 392.888 kb on + strand, within HMPREF1078_RS08965 at 392.889 kb on - strand, within HMPREF1078_RS08965 at 392.972 kb on + strand, within HMPREF1078_RS08965 at 392.972 kb on + strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.973 kb on - strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.974 kb on + strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.975 kb on - strand, within HMPREF1078_RS08965 at 392.977 kb on - strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.015 kb on + strand, within HMPREF1078_RS08965 at 393.016 kb on - strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.018 kb on + strand, within HMPREF1078_RS08965 at 393.019 kb on - strand, within HMPREF1078_RS08965 at 393.020 kb on + strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.021 kb on - strand, within HMPREF1078_RS08965 at 393.111 kb on - strand, within HMPREF1078_RS08965 at 393.123 kb on + strand at 393.123 kb on + strand at 393.124 kb on - strand at 393.124 kb on - strand at 393.133 kb on + strand at 393.133 kb on + strand at 393.134 kb on - strand at 393.134 kb on - strand at 393.134 kb on - strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.137 kb on + strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.138 kb on - strand at 393.140 kb on - strand at 393.162 kb on - strand at 393.183 kb on + strand at 393.183 kb on + strand at 393.184 kb on - strand at 393.184 kb on - strand at 393.184 kb on - strand at 393.203 kb on + strand at 393.208 kb on + strand at 393.208 kb on + strand at 393.209 kb on - strand at 393.222 kb on - strand at 393.243 kb on + strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.348 kb on - strand at 393.350 kb on - strand at 393.380 kb on - strand at 393.380 kb on - strand at 393.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 390,151 - HMPREF1078_RS08955 0.57 +1.6 390,181 - HMPREF1078_RS08955 0.58 +1.6 390,187 - HMPREF1078_RS08955 0.59 -0.7 390,187 - HMPREF1078_RS08955 0.59 -2.7 390,187 - HMPREF1078_RS08955 0.59 +1.8 390,403 - HMPREF1078_RS08955 0.68 +0.8 390,411 + HMPREF1078_RS08955 0.68 +0.8 390,411 + HMPREF1078_RS08955 0.68 +0.2 390,411 + HMPREF1078_RS08955 0.68 +4.1 390,412 - HMPREF1078_RS08955 0.68 -1.9 390,412 - HMPREF1078_RS08955 0.68 +2.0 390,422 - HMPREF1078_RS08955 0.69 +0.4 390,427 - HMPREF1078_RS08955 0.69 +0.6 390,433 - HMPREF1078_RS08955 0.69 -0.4 390,471 - HMPREF1078_RS08955 0.71 -0.2 390,474 - HMPREF1078_RS08955 0.71 -0.1 390,497 - HMPREF1078_RS08955 0.72 -1.0 390,598 - HMPREF1078_RS08955 0.76 -2.4 390,598 - HMPREF1078_RS08955 0.76 -1.5 390,608 + HMPREF1078_RS08955 0.77 +0.2 390,702 + HMPREF1078_RS08955 0.81 +0.8 390,702 + HMPREF1078_RS08955 0.81 -1.2 390,703 - HMPREF1078_RS08955 0.81 +0.4 390,703 - HMPREF1078_RS08955 0.81 -0.2 390,703 - HMPREF1078_RS08955 0.81 +2.0 390,845 - HMPREF1078_RS08955 0.87 +0.2 391,011 - +0.2 391,144 + +1.4 391,155 + -0.6 391,181 + -2.5 391,190 + -1.8 391,190 + +0.2 391,191 - -0.2 391,191 - -1.8 391,201 + -0.6 391,202 - +0.2 391,202 - -0.9 391,202 - -1.6 391,238 + -0.2 391,282 + HMPREF1078_RS08960 0.11 -0.5 391,282 + HMPREF1078_RS08960 0.11 -0.3 391,283 - HMPREF1078_RS08960 0.11 +0.8 391,330 - HMPREF1078_RS08960 0.14 -0.4 391,330 - HMPREF1078_RS08960 0.14 -0.3 391,382 - HMPREF1078_RS08960 0.18 -1.3 391,439 + HMPREF1078_RS08960 0.23 -0.5 391,443 - HMPREF1078_RS08960 0.23 -1.3 391,445 - HMPREF1078_RS08960 0.23 +0.5 391,526 - HMPREF1078_RS08960 0.29 +0.4 391,531 + HMPREF1078_RS08960 0.30 +0.2 391,531 + HMPREF1078_RS08960 0.30 -1.5 391,531 + HMPREF1078_RS08960 0.30 -0.8 391,531 + HMPREF1078_RS08960 0.30 +0.4 391,532 - HMPREF1078_RS08960 0.30 -0.7 391,534 - HMPREF1078_RS08960 0.30 +0.2 391,579 - HMPREF1078_RS08960 0.33 -0.1 391,614 + HMPREF1078_RS08960 0.36 +1.8 391,615 - HMPREF1078_RS08960 0.36 +1.4 391,646 - HMPREF1078_RS08960 0.38 +0.3 391,768 + HMPREF1078_RS08960 0.48 +0.6 391,768 + HMPREF1078_RS08960 0.48 +0.6 391,769 - HMPREF1078_RS08960 0.48 +0.1 391,796 + HMPREF1078_RS08960 0.50 +0.1 391,884 + HMPREF1078_RS08960 0.56 -1.0 391,885 - HMPREF1078_RS08960 0.56 -1.9 392,098 + HMPREF1078_RS08960 0.72 +0.5 392,098 + HMPREF1078_RS08960 0.72 -0.6 392,098 + HMPREF1078_RS08960 0.72 +2.8 392,122 + HMPREF1078_RS08960 0.74 -0.8 392,153 - HMPREF1078_RS08960 0.77 +1.4 392,220 + HMPREF1078_RS08960 0.82 +0.8 392,220 + HMPREF1078_RS08960 0.82 -2.1 392,287 + HMPREF1078_RS08960 0.87 -1.2 392,394 + -1.9 392,410 - -0.1 392,410 - -2.0 392,411 + -1.1 392,411 + -1.1 392,412 - -2.3 392,412 - +0.4 392,412 - -0.9 392,412 - -1.1 392,412 - +1.8 392,412 - -1.7 392,437 + +0.4 392,438 - +0.8 392,460 - +0.1 392,467 - -1.8 392,467 - +1.2 392,542 + -0.4 392,542 + -2.3 392,543 - +0.2 392,543 - +0.4 392,544 + -0.6 392,544 + -1.6 392,544 + -0.8 392,544 + -1.0 392,544 + -0.4 392,544 + -1.6 392,544 + +0.8 392,544 + +1.8 392,545 - -1.0 392,545 - -0.4 392,549 + -0.5 392,616 + -0.2 392,616 + -0.4 392,616 + -1.4 392,616 + -2.2 392,617 - +0.5 392,617 - +1.8 392,617 - +1.6 392,621 + -0.9 392,621 + -0.5 392,621 + -0.0 392,621 + -2.4 392,621 + +0.7 392,621 + -0.7 392,621 + -0.9 392,621 + -1.7 392,622 - -1.7 392,622 - -1.7 392,628 - -0.2 392,649 - +1.3 392,666 + +0.4 392,688 + +0.5 392,689 - +0.4 392,706 - -3.3 392,724 - -0.2 392,767 - -1.2 392,799 + HMPREF1078_RS08965 0.14 +1.2 392,800 - HMPREF1078_RS08965 0.14 -0.2 392,801 + HMPREF1078_RS08965 0.14 +0.8 392,801 + HMPREF1078_RS08965 0.14 +0.1 392,801 + HMPREF1078_RS08965 0.14 -0.9 392,801 + HMPREF1078_RS08965 0.14 -0.2 392,801 + HMPREF1078_RS08965 0.14 +0.4 392,802 - HMPREF1078_RS08965 0.14 -0.1 392,888 + HMPREF1078_RS08965 0.35 +0.1 392,888 + HMPREF1078_RS08965 0.35 -0.4 392,889 - HMPREF1078_RS08965 0.35 -0.7 392,972 + HMPREF1078_RS08965 0.55 -0.2 392,972 + HMPREF1078_RS08965 0.55 +1.5 392,973 - HMPREF1078_RS08965 0.55 -0.2 392,973 - HMPREF1078_RS08965 0.55 -1.7 392,973 - HMPREF1078_RS08965 0.55 +0.3 392,974 + HMPREF1078_RS08965 0.55 +0.1 392,974 + HMPREF1078_RS08965 0.55 +0.4 392,974 + HMPREF1078_RS08965 0.55 -0.9 392,974 + HMPREF1078_RS08965 0.55 -0.9 392,975 - HMPREF1078_RS08965 0.55 +0.1 392,975 - HMPREF1078_RS08965 0.55 -1.3 392,975 - HMPREF1078_RS08965 0.55 -0.2 392,975 - HMPREF1078_RS08965 0.55 +1.3 392,977 - HMPREF1078_RS08965 0.56 -0.2 393,015 + HMPREF1078_RS08965 0.65 +1.5 393,015 + HMPREF1078_RS08965 0.65 -1.4 393,015 + HMPREF1078_RS08965 0.65 -0.9 393,015 + HMPREF1078_RS08965 0.65 +1.6 393,015 + HMPREF1078_RS08965 0.65 -1.2 393,015 + HMPREF1078_RS08965 0.65 -1.2 393,016 - HMPREF1078_RS08965 0.65 +0.2 393,018 + HMPREF1078_RS08965 0.65 +0.2 393,018 + HMPREF1078_RS08965 0.65 +0.8 393,018 + HMPREF1078_RS08965 0.65 +3.0 393,019 - HMPREF1078_RS08965 0.66 +0.4 393,020 + HMPREF1078_RS08965 0.66 -0.5 393,021 - HMPREF1078_RS08965 0.66 -1.0 393,021 - HMPREF1078_RS08965 0.66 +0.5 393,021 - HMPREF1078_RS08965 0.66 -1.0 393,021 - HMPREF1078_RS08965 0.66 -1.9 393,021 - HMPREF1078_RS08965 0.66 +0.6 393,021 - HMPREF1078_RS08965 0.66 -2.2 393,021 - HMPREF1078_RS08965 0.66 -0.2 393,021 - HMPREF1078_RS08965 0.66 +1.2 393,111 - HMPREF1078_RS08965 0.87 -1.0 393,123 + +1.8 393,123 + -0.8 393,124 - -0.0 393,124 - -0.3 393,133 + +0.2 393,133 + -0.9 393,134 - -1.9 393,134 - -1.5 393,134 - -0.2 393,137 + +1.8 393,137 + -0.8 393,137 + -0.2 393,137 + -1.1 393,138 - -0.5 393,138 - +0.8 393,138 - -0.8 393,138 - -0.8 393,138 - -0.1 393,138 - +0.6 393,138 - -1.9 393,140 - -2.5 393,162 - +0.8 393,183 + +1.8 393,183 + -0.7 393,184 - +1.1 393,184 - -0.2 393,184 - +1.8 393,203 + +0.2 393,208 + +0.5 393,208 + -0.4 393,209 - -1.5 393,222 - -0.4 393,243 + -0.2 393,348 - +1.8 393,348 - +1.8 393,348 - +0.8 393,348 - -0.5 393,348 - -1.3 393,350 - +1.1 393,380 - -0.2 393,380 - -0.5 393,408 + +0.2
Or see this region's nucleotide sequence