Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08645 and HMPREF1078_RS08650 are separated by 12 nucleotides HMPREF1078_RS08650 and HMPREF1078_RS08655 are separated by 74 nucleotides HMPREF1078_RS08655 and HMPREF1078_RS08660 are separated by 11 nucleotides
HMPREF1078_RS08645: HMPREF1078_RS08645 - glycerate kinase, at 313,366 to 314,511
_RS08645
HMPREF1078_RS08650: HMPREF1078_RS08650 - helix-turn-helix domain-containing protein, at 314,524 to 315,336
_RS08650
HMPREF1078_RS08655: HMPREF1078_RS08655 - pyridoxamine 5'-phosphate oxidase family protein, at 315,411 to 315,812
_RS08655
HMPREF1078_RS08660: HMPREF1078_RS08660 - glycosyltransferase family 2 protein, at 315,824 to 316,756
_RS08660
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.698 kb on + strand, within HMPREF1078_RS08645 at 313.702 kb on + strand, within HMPREF1078_RS08645 at 313.703 kb on - strand, within HMPREF1078_RS08645 at 313.756 kb on - strand, within HMPREF1078_RS08645 at 313.796 kb on + strand, within HMPREF1078_RS08645 at 313.796 kb on + strand, within HMPREF1078_RS08645 at 313.796 kb on + strand, within HMPREF1078_RS08645 at 313.797 kb on - strand, within HMPREF1078_RS08645 at 313.797 kb on - strand, within HMPREF1078_RS08645 at 313.800 kb on + strand, within HMPREF1078_RS08645 at 313.837 kb on + strand, within HMPREF1078_RS08645 at 313.893 kb on + strand, within HMPREF1078_RS08645 at 313.905 kb on - strand, within HMPREF1078_RS08645 at 313.905 kb on - strand, within HMPREF1078_RS08645 at 313.950 kb on - strand, within HMPREF1078_RS08645 at 313.950 kb on - strand, within HMPREF1078_RS08645 at 314.044 kb on - strand, within HMPREF1078_RS08645 at 314.328 kb on - strand, within HMPREF1078_RS08645 at 314.330 kb on + strand, within HMPREF1078_RS08645 at 314.330 kb on + strand, within HMPREF1078_RS08645 at 314.345 kb on + strand, within HMPREF1078_RS08645 at 314.346 kb on - strand, within HMPREF1078_RS08645 at 314.348 kb on - strand, within HMPREF1078_RS08645 at 314.387 kb on + strand, within HMPREF1078_RS08645 at 314.388 kb on - strand, within HMPREF1078_RS08645 at 314.524 kb on - strand at 314.528 kb on - strand at 314.564 kb on - strand at 314.856 kb on - strand, within HMPREF1078_RS08650 at 314.907 kb on - strand, within HMPREF1078_RS08650 at 314.924 kb on + strand, within HMPREF1078_RS08650 at 314.981 kb on - strand, within HMPREF1078_RS08650 at 314.981 kb on - strand, within HMPREF1078_RS08650 at 315.109 kb on + strand, within HMPREF1078_RS08650 at 315.109 kb on + strand, within HMPREF1078_RS08650 at 315.121 kb on - strand, within HMPREF1078_RS08650 at 315.134 kb on - strand, within HMPREF1078_RS08650 at 315.226 kb on + strand, within HMPREF1078_RS08650 at 315.227 kb on - strand, within HMPREF1078_RS08650 at 315.227 kb on - strand, within HMPREF1078_RS08650 at 315.325 kb on + strand at 315.326 kb on - strand at 315.326 kb on - strand at 315.390 kb on + strand at 315.394 kb on + strand at 315.395 kb on - strand at 315.471 kb on - strand, within HMPREF1078_RS08655 at 315.610 kb on + strand, within HMPREF1078_RS08655 at 315.611 kb on - strand, within HMPREF1078_RS08655 at 315.615 kb on + strand, within HMPREF1078_RS08655 at 315.616 kb on - strand, within HMPREF1078_RS08655 at 315.632 kb on + strand, within HMPREF1078_RS08655 at 315.632 kb on + strand, within HMPREF1078_RS08655 at 315.665 kb on + strand, within HMPREF1078_RS08655 at 315.745 kb on - strand, within HMPREF1078_RS08655 at 315.800 kb on + strand at 315.800 kb on + strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.810 kb on + strand at 315.848 kb on - strand at 315.850 kb on + strand at 315.850 kb on + strand at 315.851 kb on - strand at 315.852 kb on + strand at 315.853 kb on - strand at 315.892 kb on + strand at 315.894 kb on + strand at 315.894 kb on + strand at 315.896 kb on - strand at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.994 kb on - strand, within HMPREF1078_RS08660 at 315.995 kb on + strand, within HMPREF1078_RS08660 at 316.005 kb on - strand, within HMPREF1078_RS08660 at 316.009 kb on + strand, within HMPREF1078_RS08660 at 316.010 kb on - strand, within HMPREF1078_RS08660 at 316.049 kb on - strand, within HMPREF1078_RS08660 at 316.094 kb on - strand, within HMPREF1078_RS08660 at 316.099 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.174 kb on - strand, within HMPREF1078_RS08660 at 316.274 kb on + strand, within HMPREF1078_RS08660 at 316.275 kb on - strand, within HMPREF1078_RS08660 at 316.294 kb on + strand, within HMPREF1078_RS08660 at 316.295 kb on - strand, within HMPREF1078_RS08660 at 316.295 kb on - strand, within HMPREF1078_RS08660 at 316.334 kb on - strand, within HMPREF1078_RS08660 at 316.334 kb on - strand, within HMPREF1078_RS08660
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 313,698 + HMPREF1078_RS08645 0.29 -0.2 313,702 + HMPREF1078_RS08645 0.29 +0.7 313,703 - HMPREF1078_RS08645 0.29 -1.0 313,756 - HMPREF1078_RS08645 0.34 +1.8 313,796 + HMPREF1078_RS08645 0.38 +1.9 313,796 + HMPREF1078_RS08645 0.38 +0.4 313,796 + HMPREF1078_RS08645 0.38 -0.3 313,797 - HMPREF1078_RS08645 0.38 +2.4 313,797 - HMPREF1078_RS08645 0.38 +0.2 313,800 + HMPREF1078_RS08645 0.38 +0.2 313,837 + HMPREF1078_RS08645 0.41 -1.4 313,893 + HMPREF1078_RS08645 0.46 -0.2 313,905 - HMPREF1078_RS08645 0.47 -0.2 313,905 - HMPREF1078_RS08645 0.47 +0.7 313,950 - HMPREF1078_RS08645 0.51 -1.5 313,950 - HMPREF1078_RS08645 0.51 +0.4 314,044 - HMPREF1078_RS08645 0.59 +0.2 314,328 - HMPREF1078_RS08645 0.84 -0.5 314,330 + HMPREF1078_RS08645 0.84 -2.9 314,330 + HMPREF1078_RS08645 0.84 -1.3 314,345 + HMPREF1078_RS08645 0.85 +0.8 314,346 - HMPREF1078_RS08645 0.86 +1.4 314,348 - HMPREF1078_RS08645 0.86 +1.8 314,387 + HMPREF1078_RS08645 0.89 +0.2 314,388 - HMPREF1078_RS08645 0.89 +0.2 314,524 - +1.4 314,528 - +1.4 314,564 - +1.6 314,856 - HMPREF1078_RS08650 0.41 -1.2 314,907 - HMPREF1078_RS08650 0.47 -0.8 314,924 + HMPREF1078_RS08650 0.49 +1.1 314,981 - HMPREF1078_RS08650 0.56 +1.8 314,981 - HMPREF1078_RS08650 0.56 +1.8 315,109 + HMPREF1078_RS08650 0.72 +0.7 315,109 + HMPREF1078_RS08650 0.72 +0.1 315,121 - HMPREF1078_RS08650 0.73 -0.8 315,134 - HMPREF1078_RS08650 0.75 +1.8 315,226 + HMPREF1078_RS08650 0.86 +0.8 315,227 - HMPREF1078_RS08650 0.86 +0.5 315,227 - HMPREF1078_RS08650 0.86 +0.1 315,325 + -0.4 315,326 - +2.1 315,326 - -0.5 315,390 + +0.3 315,394 + +0.5 315,395 - -1.4 315,471 - HMPREF1078_RS08655 0.15 -0.3 315,610 + HMPREF1078_RS08655 0.50 +0.4 315,611 - HMPREF1078_RS08655 0.50 -1.3 315,615 + HMPREF1078_RS08655 0.51 +1.4 315,616 - HMPREF1078_RS08655 0.51 +0.8 315,632 + HMPREF1078_RS08655 0.55 +0.2 315,632 + HMPREF1078_RS08655 0.55 -2.5 315,665 + HMPREF1078_RS08655 0.63 -0.2 315,745 - HMPREF1078_RS08655 0.83 +1.2 315,800 + -2.1 315,800 + +1.0 315,801 - +0.2 315,801 - -1.8 315,801 - +0.2 315,801 - +0.4 315,810 + -0.8 315,848 - -1.0 315,850 + -1.1 315,850 + -1.2 315,851 - +0.2 315,852 + -1.5 315,853 - -2.0 315,892 + -0.2 315,894 + +0.8 315,894 + -0.5 315,896 - -1.8 315,993 + HMPREF1078_RS08660 0.18 -0.5 315,993 + HMPREF1078_RS08660 0.18 -1.2 315,993 + HMPREF1078_RS08660 0.18 +0.2 315,994 - HMPREF1078_RS08660 0.18 -1.5 315,995 + HMPREF1078_RS08660 0.18 -1.0 316,005 - HMPREF1078_RS08660 0.19 -0.5 316,009 + HMPREF1078_RS08660 0.20 -2.1 316,010 - HMPREF1078_RS08660 0.20 +0.8 316,049 - HMPREF1078_RS08660 0.24 -3.0 316,094 - HMPREF1078_RS08660 0.29 -1.9 316,099 + HMPREF1078_RS08660 0.29 -2.5 316,156 + HMPREF1078_RS08660 0.36 -2.8 316,156 + HMPREF1078_RS08660 0.36 -1.9 316,156 + HMPREF1078_RS08660 0.36 +1.8 316,174 - HMPREF1078_RS08660 0.38 +0.2 316,274 + HMPREF1078_RS08660 0.48 -0.5 316,275 - HMPREF1078_RS08660 0.48 -2.2 316,294 + HMPREF1078_RS08660 0.50 +1.8 316,295 - HMPREF1078_RS08660 0.50 +1.8 316,295 - HMPREF1078_RS08660 0.50 -1.0 316,334 - HMPREF1078_RS08660 0.55 -1.3 316,334 - HMPREF1078_RS08660 0.55 -0.5
Or see this region's nucleotide sequence