Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08340 and HMPREF1078_RS19580 are separated by 323 nucleotides HMPREF1078_RS19580 and HMPREF1078_RS08355 are separated by 370 nucleotides HMPREF1078_RS08355 and HMPREF1078_RS19585 are separated by 5 nucleotides HMPREF1078_RS19585 and HMPREF1078_RS19355 are separated by 33 nucleotides HMPREF1078_RS19355 and HMPREF1078_RS08365 are separated by 4 nucleotides
HMPREF1078_RS08340: HMPREF1078_RS08340 - sigma-70 family RNA polymerase sigma factor, at 237,433 to 237,993
_RS08340
HMPREF1078_RS19580: HMPREF1078_RS19580 - hypothetical protein, at 238,317 to 238,568
_RS19580
HMPREF1078_RS08355: HMPREF1078_RS08355 - GNAT family N-acetyltransferase, at 238,939 to 239,538
_RS08355
HMPREF1078_RS19585: HMPREF1078_RS19585 - hypothetical protein, at 239,544 to 239,711
_RS19585
HMPREF1078_RS19355: HMPREF1078_RS19355 - hypothetical protein, at 239,745 to 240,212
_RS19355
HMPREF1078_RS08365: HMPREF1078_RS08365 - site-specific integrase, at 240,217 to 241,464
_RS08365
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 237.993 kb on + strand at 237.993 kb on + strand at 238.017 kb on - strand at 238.017 kb on - strand at 238.017 kb on - strand at 238.232 kb on + strand at 238.258 kb on + strand at 238.287 kb on + strand at 238.311 kb on + strand at 238.330 kb on + strand at 238.330 kb on + strand at 238.331 kb on - strand at 238.331 kb on - strand at 238.400 kb on - strand, within HMPREF1078_RS19580 at 238.402 kb on - strand, within HMPREF1078_RS19580 at 238.470 kb on + strand, within HMPREF1078_RS19580 at 238.471 kb on - strand, within HMPREF1078_RS19580 at 238.471 kb on - strand, within HMPREF1078_RS19580 at 238.477 kb on - strand, within HMPREF1078_RS19580 at 238.477 kb on - strand, within HMPREF1078_RS19580 at 238.477 kb on - strand, within HMPREF1078_RS19580 at 238.477 kb on - strand, within HMPREF1078_RS19580 at 238.585 kb on + strand at 238.586 kb on - strand at 238.589 kb on + strand at 238.589 kb on + strand at 238.590 kb on - strand at 238.600 kb on + strand at 238.600 kb on + strand at 238.601 kb on - strand at 238.601 kb on - strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.667 kb on + strand at 238.668 kb on - strand at 238.677 kb on + strand at 238.682 kb on + strand at 238.765 kb on - strand at 238.765 kb on - strand at 238.772 kb on + strand at 238.773 kb on - strand at 238.773 kb on - strand at 238.795 kb on - strand at 238.795 kb on - strand at 238.861 kb on + strand at 238.870 kb on + strand at 238.927 kb on + strand at 238.928 kb on - strand at 238.928 kb on - strand at 238.929 kb on + strand at 238.929 kb on + strand at 238.930 kb on - strand at 238.930 kb on - strand at 238.930 kb on - strand at 238.930 kb on - strand at 238.930 kb on - strand at 238.930 kb on - strand at 238.933 kb on - strand at 238.933 kb on - strand at 238.933 kb on - strand at 238.933 kb on - strand at 238.935 kb on + strand at 238.935 kb on + strand at 238.936 kb on - strand at 238.936 kb on - strand at 238.962 kb on - strand at 239.003 kb on + strand, within HMPREF1078_RS08355 at 239.004 kb on - strand, within HMPREF1078_RS08355 at 239.006 kb on + strand, within HMPREF1078_RS08355 at 239.006 kb on + strand, within HMPREF1078_RS08355 at 239.033 kb on + strand, within HMPREF1078_RS08355 at 239.060 kb on + strand, within HMPREF1078_RS08355 at 239.060 kb on + strand, within HMPREF1078_RS08355 at 239.063 kb on + strand, within HMPREF1078_RS08355 at 239.087 kb on + strand, within HMPREF1078_RS08355 at 239.087 kb on + strand, within HMPREF1078_RS08355 at 239.087 kb on + strand, within HMPREF1078_RS08355 at 239.087 kb on + strand, within HMPREF1078_RS08355 at 239.088 kb on - strand, within HMPREF1078_RS08355 at 239.088 kb on - strand, within HMPREF1078_RS08355 at 239.150 kb on - strand, within HMPREF1078_RS08355 at 239.173 kb on + strand, within HMPREF1078_RS08355 at 239.173 kb on + strand, within HMPREF1078_RS08355 at 239.173 kb on + strand, within HMPREF1078_RS08355 at 239.173 kb on + strand, within HMPREF1078_RS08355 at 239.174 kb on - strand, within HMPREF1078_RS08355 at 239.174 kb on - strand, within HMPREF1078_RS08355 at 239.187 kb on + strand, within HMPREF1078_RS08355 at 239.187 kb on + strand, within HMPREF1078_RS08355 at 239.188 kb on - strand, within HMPREF1078_RS08355 at 239.196 kb on - strand, within HMPREF1078_RS08355 at 239.222 kb on - strand, within HMPREF1078_RS08355 at 239.237 kb on + strand, within HMPREF1078_RS08355 at 239.238 kb on - strand, within HMPREF1078_RS08355 at 239.260 kb on + strand, within HMPREF1078_RS08355 at 239.261 kb on - strand, within HMPREF1078_RS08355 at 239.261 kb on - strand, within HMPREF1078_RS08355 at 239.287 kb on - strand, within HMPREF1078_RS08355 at 239.300 kb on - strand, within HMPREF1078_RS08355 at 239.302 kb on + strand, within HMPREF1078_RS08355 at 239.302 kb on + strand, within HMPREF1078_RS08355 at 239.303 kb on - strand, within HMPREF1078_RS08355 at 239.303 kb on - strand, within HMPREF1078_RS08355 at 239.316 kb on + strand, within HMPREF1078_RS08355 at 239.316 kb on + strand, within HMPREF1078_RS08355 at 239.316 kb on + strand, within HMPREF1078_RS08355 at 239.317 kb on - strand, within HMPREF1078_RS08355 at 239.317 kb on - strand, within HMPREF1078_RS08355 at 239.334 kb on + strand, within HMPREF1078_RS08355 at 239.350 kb on - strand, within HMPREF1078_RS08355 at 239.381 kb on + strand, within HMPREF1078_RS08355 at 239.382 kb on - strand, within HMPREF1078_RS08355 at 239.382 kb on - strand, within HMPREF1078_RS08355 at 239.382 kb on - strand, within HMPREF1078_RS08355 at 239.382 kb on - strand, within HMPREF1078_RS08355 at 239.382 kb on - strand, within HMPREF1078_RS08355 at 239.408 kb on + strand, within HMPREF1078_RS08355 at 239.483 kb on - strand at 239.493 kb on + strand at 239.495 kb on + strand at 239.495 kb on + strand at 239.496 kb on - strand at 239.496 kb on - strand at 239.519 kb on + strand at 239.519 kb on + strand at 239.520 kb on - strand at 239.522 kb on - strand at 239.747 kb on - strand at 239.759 kb on - strand at 239.884 kb on + strand, within HMPREF1078_RS19355 at 240.532 kb on - strand, within HMPREF1078_RS08365 at 240.534 kb on - strand, within HMPREF1078_RS08365 at 240.534 kb on - strand, within HMPREF1078_RS08365
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 237,993 + -0.1 237,993 + +1.9 238,017 - -1.5 238,017 - -0.9 238,017 - +1.5 238,232 + -0.0 238,258 + +0.3 238,287 + -1.2 238,311 + -1.2 238,330 + +0.3 238,330 + +0.1 238,331 - +0.9 238,331 - +0.9 238,400 - HMPREF1078_RS19580 0.33 +0.8 238,402 - HMPREF1078_RS19580 0.34 -0.3 238,470 + HMPREF1078_RS19580 0.61 -0.0 238,471 - HMPREF1078_RS19580 0.61 +0.9 238,471 - HMPREF1078_RS19580 0.61 +1.2 238,477 - HMPREF1078_RS19580 0.63 +0.3 238,477 - HMPREF1078_RS19580 0.63 -0.1 238,477 - HMPREF1078_RS19580 0.63 -1.5 238,477 - HMPREF1078_RS19580 0.63 +1.1 238,585 + +1.7 238,586 - +0.8 238,589 + +0.5 238,589 + -0.7 238,590 - -1.1 238,600 + +0.9 238,600 + +0.5 238,601 - -1.7 238,601 - -1.1 238,614 + -1.3 238,614 + +1.6 238,615 - -0.3 238,615 - +0.3 238,615 - +0.3 238,667 + -0.1 238,668 - +1.9 238,677 + -0.9 238,682 + +1.1 238,765 - +0.5 238,765 - -1.1 238,772 + -0.7 238,773 - -0.1 238,773 - +1.0 238,795 - +0.0 238,795 - -0.1 238,861 + +0.3 238,870 + -2.1 238,927 + +1.5 238,928 - +0.8 238,928 - +0.9 238,929 + +0.3 238,929 + -2.7 238,930 - -1.1 238,930 - -0.8 238,930 - -2.4 238,930 - -0.5 238,930 - +0.5 238,930 - +0.9 238,933 - +0.5 238,933 - +0.8 238,933 - +0.3 238,933 - +2.8 238,935 + +0.5 238,935 + -0.7 238,936 - +1.1 238,936 - -1.6 238,962 - +1.2 239,003 + HMPREF1078_RS08355 0.11 +0.9 239,004 - HMPREF1078_RS08355 0.11 +1.6 239,006 + HMPREF1078_RS08355 0.11 -1.5 239,006 + HMPREF1078_RS08355 0.11 +0.5 239,033 + HMPREF1078_RS08355 0.16 +0.4 239,060 + HMPREF1078_RS08355 0.20 -1.1 239,060 + HMPREF1078_RS08355 0.20 -0.3 239,063 + HMPREF1078_RS08355 0.21 +1.9 239,087 + HMPREF1078_RS08355 0.25 +0.4 239,087 + HMPREF1078_RS08355 0.25 -1.1 239,087 + HMPREF1078_RS08355 0.25 +0.3 239,087 + HMPREF1078_RS08355 0.25 -0.6 239,088 - HMPREF1078_RS08355 0.25 -1.9 239,088 - HMPREF1078_RS08355 0.25 +2.5 239,150 - HMPREF1078_RS08355 0.35 +1.0 239,173 + HMPREF1078_RS08355 0.39 +0.9 239,173 + HMPREF1078_RS08355 0.39 -0.3 239,173 + HMPREF1078_RS08355 0.39 +0.5 239,173 + HMPREF1078_RS08355 0.39 +0.3 239,174 - HMPREF1078_RS08355 0.39 +0.4 239,174 - HMPREF1078_RS08355 0.39 +0.2 239,187 + HMPREF1078_RS08355 0.41 -0.5 239,187 + HMPREF1078_RS08355 0.41 +0.9 239,188 - HMPREF1078_RS08355 0.41 -1.7 239,196 - HMPREF1078_RS08355 0.43 -0.1 239,222 - HMPREF1078_RS08355 0.47 -1.4 239,237 + HMPREF1078_RS08355 0.50 +2.3 239,238 - HMPREF1078_RS08355 0.50 -0.9 239,260 + HMPREF1078_RS08355 0.54 +0.9 239,261 - HMPREF1078_RS08355 0.54 -0.5 239,261 - HMPREF1078_RS08355 0.54 +0.3 239,287 - HMPREF1078_RS08355 0.58 +0.9 239,300 - HMPREF1078_RS08355 0.60 +0.0 239,302 + HMPREF1078_RS08355 0.60 -2.2 239,302 + HMPREF1078_RS08355 0.60 -0.2 239,303 - HMPREF1078_RS08355 0.61 +0.9 239,303 - HMPREF1078_RS08355 0.61 -1.0 239,316 + HMPREF1078_RS08355 0.63 -2.0 239,316 + HMPREF1078_RS08355 0.63 +0.5 239,316 + HMPREF1078_RS08355 0.63 +1.3 239,317 - HMPREF1078_RS08355 0.63 -0.2 239,317 - HMPREF1078_RS08355 0.63 -0.3 239,334 + HMPREF1078_RS08355 0.66 -1.0 239,350 - HMPREF1078_RS08355 0.69 +4.0 239,381 + HMPREF1078_RS08355 0.74 +1.1 239,382 - HMPREF1078_RS08355 0.74 +2.1 239,382 - HMPREF1078_RS08355 0.74 -0.1 239,382 - HMPREF1078_RS08355 0.74 -1.7 239,382 - HMPREF1078_RS08355 0.74 -0.2 239,382 - HMPREF1078_RS08355 0.74 -0.6 239,408 + HMPREF1078_RS08355 0.78 -0.4 239,483 - -1.0 239,493 + -1.1 239,495 + +0.4 239,495 + +1.1 239,496 - -0.2 239,496 - +1.1 239,519 + -1.8 239,519 + -1.1 239,520 - +1.1 239,522 - -0.2 239,747 - -0.9 239,759 - +0.2 239,884 + HMPREF1078_RS19355 0.30 +0.4 240,532 - HMPREF1078_RS08365 0.25 +1.7 240,534 - HMPREF1078_RS08365 0.25 +1.9 240,534 - HMPREF1078_RS08365 0.25 +0.3
Or see this region's nucleotide sequence