Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07575 and HMPREF1078_RS07580 are separated by 167 nucleotides HMPREF1078_RS07580 and HMPREF1078_RS07585 are separated by 5 nucleotides HMPREF1078_RS07585 and HMPREF1078_RS07590 are separated by 197 nucleotides HMPREF1078_RS07590 and HMPREF1078_RS07595 are separated by 139 nucleotides HMPREF1078_RS07595 and HMPREF1078_RS07600 are separated by 121 nucleotides HMPREF1078_RS07600 and HMPREF1078_RS07605 are separated by 36 nucleotides
HMPREF1078_RS07575: HMPREF1078_RS07575 - thioredoxin, at 53,618 to 53,983
_RS07575
HMPREF1078_RS07580: HMPREF1078_RS07580 - tRNA-Thr, at 54,151 to 54,224
_RS07580
HMPREF1078_RS07585: HMPREF1078_RS07585 - tRNA-Tyr, at 54,230 to 54,312
_RS07585
HMPREF1078_RS07590: HMPREF1078_RS07590 - tRNA-Asp, at 54,510 to 54,586
_RS07590
HMPREF1078_RS07595: HMPREF1078_RS07595 - pyridoxal phosphate-dependent aminotransferase, at 54,726 to 56,039
_RS07595
HMPREF1078_RS07600: HMPREF1078_RS07600 - YqgE/AlgH family protein, at 56,161 to 56,757
_RS07600
HMPREF1078_RS07605: HMPREF1078_RS07605 - GNAT family N-acetyltransferase, at 56,794 to 57,327
_RS07605
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 53.729 kb on + strand, within HMPREF1078_RS07575 at 53.730 kb on - strand, within HMPREF1078_RS07575 at 53.752 kb on + strand, within HMPREF1078_RS07575 at 53.752 kb on + strand, within HMPREF1078_RS07575 at 53.753 kb on - strand, within HMPREF1078_RS07575 at 53.753 kb on - strand, within HMPREF1078_RS07575 at 53.768 kb on - strand, within HMPREF1078_RS07575 at 53.772 kb on + strand, within HMPREF1078_RS07575 at 53.773 kb on - strand, within HMPREF1078_RS07575 at 53.781 kb on + strand, within HMPREF1078_RS07575 at 53.781 kb on + strand, within HMPREF1078_RS07575 at 53.792 kb on + strand, within HMPREF1078_RS07575 at 53.792 kb on + strand, within HMPREF1078_RS07575 at 53.820 kb on + strand, within HMPREF1078_RS07575 at 53.820 kb on + strand, within HMPREF1078_RS07575 at 53.820 kb on + strand, within HMPREF1078_RS07575 at 53.821 kb on - strand, within HMPREF1078_RS07575 at 53.821 kb on - strand, within HMPREF1078_RS07575 at 53.821 kb on - strand, within HMPREF1078_RS07575 at 53.860 kb on + strand, within HMPREF1078_RS07575 at 53.870 kb on - strand, within HMPREF1078_RS07575 at 53.964 kb on + strand at 53.982 kb on - strand at 53.982 kb on - strand at 53.987 kb on + strand at 53.987 kb on + strand at 53.988 kb on - strand at 53.997 kb on + strand at 53.997 kb on + strand at 53.998 kb on - strand at 54.005 kb on - strand at 54.056 kb on - strand at 54.085 kb on + strand at 54.103 kb on - strand at 54.134 kb on - strand at 54.139 kb on + strand at 54.139 kb on + strand at 54.140 kb on - strand at 54.357 kb on + strand at 54.359 kb on + strand at 54.371 kb on - strand at 54.378 kb on + strand at 54.560 kb on + strand, within HMPREF1078_RS07590 at 54.560 kb on + strand, within HMPREF1078_RS07590 at 54.595 kb on + strand at 54.629 kb on + strand at 54.630 kb on - strand at 54.630 kb on - strand at 54.630 kb on - strand at 54.631 kb on + strand at 54.634 kb on - strand at 54.634 kb on - strand at 54.634 kb on - strand at 54.654 kb on - strand at 54.709 kb on + strand at 54.712 kb on - strand at 54.718 kb on + strand at 54.743 kb on - strand at 54.769 kb on + strand at 54.769 kb on + strand at 54.769 kb on + strand at 54.770 kb on - strand at 54.770 kb on - strand at 54.770 kb on - strand at 54.954 kb on - strand, within HMPREF1078_RS07595 at 54.985 kb on + strand, within HMPREF1078_RS07595 at 54.985 kb on + strand, within HMPREF1078_RS07595 at 54.985 kb on + strand, within HMPREF1078_RS07595 at 54.986 kb on - strand, within HMPREF1078_RS07595 at 55.008 kb on - strand, within HMPREF1078_RS07595 at 55.019 kb on + strand, within HMPREF1078_RS07595 at 55.080 kb on + strand, within HMPREF1078_RS07595 at 55.080 kb on + strand, within HMPREF1078_RS07595 at 55.080 kb on + strand, within HMPREF1078_RS07595 at 55.080 kb on + strand, within HMPREF1078_RS07595 at 55.080 kb on + strand, within HMPREF1078_RS07595 at 55.081 kb on - strand, within HMPREF1078_RS07595 at 55.081 kb on - strand, within HMPREF1078_RS07595 at 55.109 kb on + strand, within HMPREF1078_RS07595 at 55.109 kb on + strand, within HMPREF1078_RS07595 at 55.187 kb on + strand, within HMPREF1078_RS07595 at 55.188 kb on - strand, within HMPREF1078_RS07595 at 55.191 kb on + strand, within HMPREF1078_RS07595 at 55.191 kb on + strand, within HMPREF1078_RS07595 at 55.192 kb on - strand, within HMPREF1078_RS07595 at 55.192 kb on - strand, within HMPREF1078_RS07595 at 55.241 kb on - strand, within HMPREF1078_RS07595 at 55.251 kb on + strand, within HMPREF1078_RS07595 at 55.252 kb on - strand, within HMPREF1078_RS07595 at 55.363 kb on - strand, within HMPREF1078_RS07595 at 55.467 kb on - strand, within HMPREF1078_RS07595 at 55.513 kb on - strand, within HMPREF1078_RS07595 at 55.513 kb on - strand, within HMPREF1078_RS07595 at 55.616 kb on - strand, within HMPREF1078_RS07595 at 55.616 kb on - strand, within HMPREF1078_RS07595 at 55.630 kb on + strand, within HMPREF1078_RS07595 at 55.633 kb on + strand, within HMPREF1078_RS07595 at 55.633 kb on + strand, within HMPREF1078_RS07595 at 55.634 kb on - strand, within HMPREF1078_RS07595 at 55.635 kb on + strand, within HMPREF1078_RS07595 at 55.636 kb on - strand, within HMPREF1078_RS07595 at 55.741 kb on - strand, within HMPREF1078_RS07595 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.814 kb on - strand, within HMPREF1078_RS07595 at 55.840 kb on - strand, within HMPREF1078_RS07595 at 55.893 kb on - strand, within HMPREF1078_RS07595 at 55.896 kb on + strand, within HMPREF1078_RS07595 at 55.937 kb on + strand at 55.951 kb on + strand at 55.961 kb on + strand at 55.962 kb on - strand at 55.970 kb on + strand at 55.987 kb on - strand at 56.037 kb on + strand at 56.038 kb on - strand at 56.038 kb on - strand at 56.060 kb on - strand at 56.060 kb on - strand at 56.073 kb on + strand at 56.118 kb on + strand at 56.122 kb on + strand at 56.122 kb on + strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.136 kb on + strand at 56.136 kb on + strand at 56.150 kb on + strand at 56.151 kb on - strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.171 kb on - strand at 56.172 kb on + strand at 56.180 kb on + strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.189 kb on + strand at 56.279 kb on + strand, within HMPREF1078_RS07600 at 56.280 kb on - strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.319 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.367 kb on - strand, within HMPREF1078_RS07600 at 56.384 kb on + strand, within HMPREF1078_RS07600 at 56.450 kb on + strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.460 kb on + strand, within HMPREF1078_RS07600 at 56.461 kb on - strand, within HMPREF1078_RS07600 at 56.475 kb on - strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.522 kb on - strand, within HMPREF1078_RS07600 at 56.524 kb on - strand, within HMPREF1078_RS07600 at 56.568 kb on - strand, within HMPREF1078_RS07600 at 56.609 kb on + strand, within HMPREF1078_RS07600 at 56.629 kb on + strand, within HMPREF1078_RS07600 at 56.630 kb on + strand, within HMPREF1078_RS07600 at 56.658 kb on - strand, within HMPREF1078_RS07600 at 56.713 kb on + strand at 56.714 kb on - strand at 56.755 kb on + strand at 56.770 kb on + strand at 56.781 kb on - strand at 56.850 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.874 kb on + strand, within HMPREF1078_RS07605 at 56.875 kb on - strand, within HMPREF1078_RS07605 at 56.926 kb on - strand, within HMPREF1078_RS07605
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 53,729 + HMPREF1078_RS07575 0.30 -0.4 53,730 - HMPREF1078_RS07575 0.31 +0.5 53,752 + HMPREF1078_RS07575 0.37 +0.9 53,752 + HMPREF1078_RS07575 0.37 -1.2 53,753 - HMPREF1078_RS07575 0.37 -0.2 53,753 - HMPREF1078_RS07575 0.37 +0.6 53,768 - HMPREF1078_RS07575 0.41 -0.7 53,772 + HMPREF1078_RS07575 0.42 +0.8 53,773 - HMPREF1078_RS07575 0.42 +1.3 53,781 + HMPREF1078_RS07575 0.45 -1.6 53,781 + HMPREF1078_RS07575 0.45 -3.0 53,792 + HMPREF1078_RS07575 0.48 +1.2 53,792 + HMPREF1078_RS07575 0.48 -2.5 53,820 + HMPREF1078_RS07575 0.55 -1.4 53,820 + HMPREF1078_RS07575 0.55 -0.7 53,820 + HMPREF1078_RS07575 0.55 +0.0 53,821 - HMPREF1078_RS07575 0.55 +0.1 53,821 - HMPREF1078_RS07575 0.55 -1.7 53,821 - HMPREF1078_RS07575 0.55 +0.0 53,860 + HMPREF1078_RS07575 0.66 -0.4 53,870 - HMPREF1078_RS07575 0.69 +0.3 53,964 + +2.9 53,982 - +0.3 53,982 - -0.2 53,987 + -1.1 53,987 + +3.5 53,988 - -0.9 53,997 + +0.4 53,997 + -0.3 53,998 - -1.0 54,005 - +3.9 54,056 - -0.4 54,085 + -2.1 54,103 - +0.5 54,134 - -0.6 54,139 + -2.6 54,139 + -1.6 54,140 - -0.6 54,357 + +0.3 54,359 + -0.7 54,371 - +1.3 54,378 + +2.0 54,560 + HMPREF1078_RS07590 0.65 +0.9 54,560 + HMPREF1078_RS07590 0.65 -0.4 54,595 + -0.1 54,629 + -0.7 54,630 - +3.5 54,630 - -0.7 54,630 - +1.4 54,631 + -0.4 54,634 - -0.9 54,634 - -0.6 54,634 - -0.1 54,654 - +0.9 54,709 + -0.9 54,712 - -1.3 54,718 + +0.9 54,743 - -0.1 54,769 + +0.3 54,769 + -0.5 54,769 + +0.2 54,770 - -0.1 54,770 - -0.7 54,770 - -1.3 54,954 - HMPREF1078_RS07595 0.17 +1.9 54,985 + HMPREF1078_RS07595 0.20 -0.7 54,985 + HMPREF1078_RS07595 0.20 +1.1 54,985 + HMPREF1078_RS07595 0.20 -1.0 54,986 - HMPREF1078_RS07595 0.20 -0.3 55,008 - HMPREF1078_RS07595 0.21 +1.9 55,019 + HMPREF1078_RS07595 0.22 -1.2 55,080 + HMPREF1078_RS07595 0.27 -0.7 55,080 + HMPREF1078_RS07595 0.27 +1.9 55,080 + HMPREF1078_RS07595 0.27 +2.6 55,080 + HMPREF1078_RS07595 0.27 -1.1 55,080 + HMPREF1078_RS07595 0.27 -0.1 55,081 - HMPREF1078_RS07595 0.27 -2.1 55,081 - HMPREF1078_RS07595 0.27 +0.5 55,109 + HMPREF1078_RS07595 0.29 +0.9 55,109 + HMPREF1078_RS07595 0.29 -2.3 55,187 + HMPREF1078_RS07595 0.35 +2.9 55,188 - HMPREF1078_RS07595 0.35 +1.2 55,191 + HMPREF1078_RS07595 0.35 +1.6 55,191 + HMPREF1078_RS07595 0.35 -1.7 55,192 - HMPREF1078_RS07595 0.35 -1.6 55,192 - HMPREF1078_RS07595 0.35 +1.3 55,241 - HMPREF1078_RS07595 0.39 -2.6 55,251 + HMPREF1078_RS07595 0.40 +0.0 55,252 - HMPREF1078_RS07595 0.40 +0.3 55,363 - HMPREF1078_RS07595 0.48 -0.7 55,467 - HMPREF1078_RS07595 0.56 +1.2 55,513 - HMPREF1078_RS07595 0.60 +0.7 55,513 - HMPREF1078_RS07595 0.60 -0.5 55,616 - HMPREF1078_RS07595 0.68 -1.7 55,616 - HMPREF1078_RS07595 0.68 +1.5 55,630 + HMPREF1078_RS07595 0.69 +1.0 55,633 + HMPREF1078_RS07595 0.69 +1.4 55,633 + HMPREF1078_RS07595 0.69 +1.0 55,634 - HMPREF1078_RS07595 0.69 +0.3 55,635 + HMPREF1078_RS07595 0.69 +0.9 55,636 - HMPREF1078_RS07595 0.69 +0.1 55,741 - HMPREF1078_RS07595 0.77 -0.7 55,813 + HMPREF1078_RS07595 0.83 +0.6 55,813 + HMPREF1078_RS07595 0.83 +2.5 55,814 - HMPREF1078_RS07595 0.83 +1.3 55,840 - HMPREF1078_RS07595 0.85 +0.3 55,893 - HMPREF1078_RS07595 0.89 +0.4 55,896 + HMPREF1078_RS07595 0.89 +0.4 55,937 + +2.5 55,951 + +2.6 55,961 + +0.7 55,962 - -0.6 55,970 + +0.6 55,987 - +0.0 56,037 + +0.3 56,038 - -0.1 56,038 - -1.9 56,060 - -1.5 56,060 - +1.1 56,073 + -0.8 56,118 + -0.7 56,122 + +1.2 56,122 + +1.7 56,123 - +0.3 56,123 - -1.1 56,123 - +0.4 56,136 + +0.3 56,136 + -1.3 56,150 + -0.1 56,151 - +1.9 56,170 + -1.6 56,170 + +0.4 56,170 + +1.6 56,170 + -0.6 56,171 - -0.7 56,172 + -1.1 56,180 + -0.4 56,181 - -1.1 56,181 - +1.6 56,181 - -0.4 56,189 + -0.1 56,279 + HMPREF1078_RS07600 0.20 +0.6 56,280 - HMPREF1078_RS07600 0.20 -1.7 56,285 + HMPREF1078_RS07600 0.21 -1.7 56,285 + HMPREF1078_RS07600 0.21 +0.6 56,285 + HMPREF1078_RS07600 0.21 -0.4 56,292 + HMPREF1078_RS07600 0.22 -0.1 56,292 + HMPREF1078_RS07600 0.22 -1.8 56,292 + HMPREF1078_RS07600 0.22 -0.4 56,319 - HMPREF1078_RS07600 0.26 +3.1 56,322 - HMPREF1078_RS07600 0.27 +0.8 56,322 - HMPREF1078_RS07600 0.27 -1.4 56,367 - HMPREF1078_RS07600 0.35 +0.2 56,384 + HMPREF1078_RS07600 0.37 +1.9 56,450 + HMPREF1078_RS07600 0.48 -0.9 56,451 - HMPREF1078_RS07600 0.49 +0.4 56,451 - HMPREF1078_RS07600 0.49 -1.6 56,451 - HMPREF1078_RS07600 0.49 +0.9 56,460 + HMPREF1078_RS07600 0.50 -0.4 56,461 - HMPREF1078_RS07600 0.50 -0.9 56,475 - HMPREF1078_RS07600 0.53 +0.9 56,516 + HMPREF1078_RS07600 0.59 +1.9 56,516 + HMPREF1078_RS07600 0.59 +0.1 56,516 + HMPREF1078_RS07600 0.59 -0.1 56,516 + HMPREF1078_RS07600 0.59 -0.8 56,517 - HMPREF1078_RS07600 0.60 -1.6 56,517 - HMPREF1078_RS07600 0.60 +0.2 56,517 - HMPREF1078_RS07600 0.60 -1.1 56,517 - HMPREF1078_RS07600 0.60 +1.2 56,517 - HMPREF1078_RS07600 0.60 +0.1 56,517 - HMPREF1078_RS07600 0.60 -0.9 56,521 + HMPREF1078_RS07600 0.60 +0.3 56,521 + HMPREF1078_RS07600 0.60 +2.4 56,521 + HMPREF1078_RS07600 0.60 -2.1 56,521 + HMPREF1078_RS07600 0.60 +0.9 56,522 - HMPREF1078_RS07600 0.60 -0.4 56,524 - HMPREF1078_RS07600 0.61 -0.4 56,568 - HMPREF1078_RS07600 0.68 -0.4 56,609 + HMPREF1078_RS07600 0.75 +0.3 56,629 + HMPREF1078_RS07600 0.78 +0.9 56,630 + HMPREF1078_RS07600 0.79 +0.5 56,658 - HMPREF1078_RS07600 0.83 -0.4 56,713 + +1.0 56,714 - -1.3 56,755 + -0.2 56,770 + +1.3 56,781 - -0.6 56,850 + HMPREF1078_RS07605 0.10 -1.9 56,872 + HMPREF1078_RS07605 0.15 +0.4 56,872 + HMPREF1078_RS07605 0.15 -2.9 56,872 + HMPREF1078_RS07605 0.15 +0.9 56,873 - HMPREF1078_RS07605 0.15 -1.1 56,873 - HMPREF1078_RS07605 0.15 +0.2 56,873 - HMPREF1078_RS07605 0.15 -1.1 56,874 + HMPREF1078_RS07605 0.15 +1.9 56,875 - HMPREF1078_RS07605 0.15 -0.1 56,926 - HMPREF1078_RS07605 0.25 -2.2
Or see this region's nucleotide sequence