Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06955 and HMPREF1078_RS06960 are separated by 26 nucleotides HMPREF1078_RS06960 and HMPREF1078_RS06965 are separated by 3 nucleotides HMPREF1078_RS06965 and HMPREF1078_RS06970 are separated by 118 nucleotides
HMPREF1078_RS06955: HMPREF1078_RS06955 - RagB/SusD family nutrient uptake outer membrane protein, at 798,832 to 800,586
_RS06955
HMPREF1078_RS06960: HMPREF1078_RS06960 - endonuclease/exonuclease/phosphatase family protein, at 800,613 to 801,491
_RS06960
HMPREF1078_RS06965: HMPREF1078_RS06965 - helix-hairpin-helix domain-containing protein, at 801,495 to 802,265
_RS06965
HMPREF1078_RS06970: HMPREF1078_RS06970 - sodium-dependent transporter, at 802,384 to 803,751
_RS06970
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.631 kb on + strand, within HMPREF1078_RS06955 at 799.744 kb on - strand, within HMPREF1078_RS06955 at 799.807 kb on + strand, within HMPREF1078_RS06955 at 799.936 kb on + strand, within HMPREF1078_RS06955 at 799.939 kb on - strand, within HMPREF1078_RS06955 at 799.978 kb on - strand, within HMPREF1078_RS06955 at 800.023 kb on + strand, within HMPREF1078_RS06955 at 800.164 kb on + strand, within HMPREF1078_RS06955 at 800.302 kb on - strand, within HMPREF1078_RS06955 at 800.304 kb on - strand, within HMPREF1078_RS06955 at 800.304 kb on - strand, within HMPREF1078_RS06955 at 800.306 kb on - strand, within HMPREF1078_RS06955 at 800.368 kb on + strand, within HMPREF1078_RS06955 at 800.369 kb on - strand, within HMPREF1078_RS06955 at 800.371 kb on - strand, within HMPREF1078_RS06955 at 800.521 kb on + strand at 800.521 kb on + strand at 800.522 kb on - strand at 800.585 kb on - strand at 800.606 kb on + strand at 800.633 kb on - strand at 800.829 kb on - strand, within HMPREF1078_RS06960 at 800.889 kb on + strand, within HMPREF1078_RS06960 at 800.895 kb on + strand, within HMPREF1078_RS06960 at 800.896 kb on - strand, within HMPREF1078_RS06960 at 800.952 kb on + strand, within HMPREF1078_RS06960 at 800.952 kb on + strand, within HMPREF1078_RS06960 at 801.038 kb on + strand, within HMPREF1078_RS06960 at 801.039 kb on - strand, within HMPREF1078_RS06960 at 801.053 kb on + strand, within HMPREF1078_RS06960 at 801.103 kb on - strand, within HMPREF1078_RS06960 at 801.177 kb on - strand, within HMPREF1078_RS06960 at 801.291 kb on + strand, within HMPREF1078_RS06960 at 801.292 kb on - strand, within HMPREF1078_RS06960 at 801.378 kb on + strand, within HMPREF1078_RS06960 at 801.378 kb on + strand, within HMPREF1078_RS06960 at 801.379 kb on - strand, within HMPREF1078_RS06960 at 801.381 kb on - strand, within HMPREF1078_RS06960 at 801.381 kb on - strand, within HMPREF1078_RS06960 at 801.414 kb on + strand at 801.414 kb on + strand at 801.431 kb on + strand at 801.475 kb on + strand at 801.496 kb on + strand at 801.497 kb on - strand at 801.511 kb on + strand at 801.512 kb on - strand at 801.638 kb on - strand, within HMPREF1078_RS06965 at 801.690 kb on + strand, within HMPREF1078_RS06965 at 801.691 kb on - strand, within HMPREF1078_RS06965 at 801.754 kb on + strand, within HMPREF1078_RS06965 at 801.806 kb on - strand, within HMPREF1078_RS06965 at 801.925 kb on - strand, within HMPREF1078_RS06965 at 801.925 kb on - strand, within HMPREF1078_RS06965 at 801.926 kb on - strand, within HMPREF1078_RS06965 at 801.930 kb on - strand, within HMPREF1078_RS06965 at 801.931 kb on + strand, within HMPREF1078_RS06965 at 801.932 kb on - strand, within HMPREF1078_RS06965 at 801.954 kb on - strand, within HMPREF1078_RS06965 at 801.968 kb on + strand, within HMPREF1078_RS06965 at 801.968 kb on + strand, within HMPREF1078_RS06965 at 801.989 kb on + strand, within HMPREF1078_RS06965 at 801.989 kb on + strand, within HMPREF1078_RS06965 at 802.176 kb on + strand, within HMPREF1078_RS06965 at 802.243 kb on + strand at 802.268 kb on + strand at 802.268 kb on + strand at 802.268 kb on + strand at 802.303 kb on + strand at 802.312 kb on + strand at 802.330 kb on - strand at 802.343 kb on - strand at 802.343 kb on - strand at 802.344 kb on + strand at 802.373 kb on - strand at 802.432 kb on + strand at 802.433 kb on - strand at 802.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 799,631 + HMPREF1078_RS06955 0.46 -0.1 799,744 - HMPREF1078_RS06955 0.52 +1.0 799,807 + HMPREF1078_RS06955 0.56 +0.9 799,936 + HMPREF1078_RS06955 0.63 +1.7 799,939 - HMPREF1078_RS06955 0.63 +0.1 799,978 - HMPREF1078_RS06955 0.65 -0.5 800,023 + HMPREF1078_RS06955 0.68 -0.3 800,164 + HMPREF1078_RS06955 0.76 +1.7 800,302 - HMPREF1078_RS06955 0.84 +1.0 800,304 - HMPREF1078_RS06955 0.84 -0.9 800,304 - HMPREF1078_RS06955 0.84 +1.7 800,306 - HMPREF1078_RS06955 0.84 +0.6 800,368 + HMPREF1078_RS06955 0.88 +0.1 800,369 - HMPREF1078_RS06955 0.88 -3.1 800,371 - HMPREF1078_RS06955 0.88 +0.4 800,521 + +0.1 800,521 + +1.0 800,522 - -0.8 800,585 - +0.3 800,606 + +0.9 800,633 - +0.5 800,829 - HMPREF1078_RS06960 0.25 +0.7 800,889 + HMPREF1078_RS06960 0.31 +1.7 800,895 + HMPREF1078_RS06960 0.32 -2.9 800,896 - HMPREF1078_RS06960 0.32 +1.7 800,952 + HMPREF1078_RS06960 0.39 +1.1 800,952 + HMPREF1078_RS06960 0.39 -0.2 801,038 + HMPREF1078_RS06960 0.48 -2.4 801,039 - HMPREF1078_RS06960 0.48 +0.1 801,053 + HMPREF1078_RS06960 0.50 -1.0 801,103 - HMPREF1078_RS06960 0.56 -1.1 801,177 - HMPREF1078_RS06960 0.64 -0.1 801,291 + HMPREF1078_RS06960 0.77 +0.5 801,292 - HMPREF1078_RS06960 0.77 -1.3 801,378 + HMPREF1078_RS06960 0.87 -0.4 801,378 + HMPREF1078_RS06960 0.87 -0.6 801,379 - HMPREF1078_RS06960 0.87 +2.3 801,381 - HMPREF1078_RS06960 0.87 -1.4 801,381 - HMPREF1078_RS06960 0.87 -0.2 801,414 + +0.7 801,414 + +0.5 801,431 + -1.5 801,475 + -0.4 801,496 + -1.7 801,497 - +0.6 801,511 + +0.0 801,512 - -0.7 801,638 - HMPREF1078_RS06965 0.19 +0.8 801,690 + HMPREF1078_RS06965 0.25 -0.9 801,691 - HMPREF1078_RS06965 0.25 -1.8 801,754 + HMPREF1078_RS06965 0.34 -0.8 801,806 - HMPREF1078_RS06965 0.40 -0.2 801,925 - HMPREF1078_RS06965 0.56 -1.8 801,925 - HMPREF1078_RS06965 0.56 +1.1 801,926 - HMPREF1078_RS06965 0.56 -1.0 801,930 - HMPREF1078_RS06965 0.56 +1.1 801,931 + HMPREF1078_RS06965 0.57 -2.3 801,932 - HMPREF1078_RS06965 0.57 -2.1 801,954 - HMPREF1078_RS06965 0.60 -0.8 801,968 + HMPREF1078_RS06965 0.61 +0.2 801,968 + HMPREF1078_RS06965 0.61 +0.6 801,989 + HMPREF1078_RS06965 0.64 -0.7 801,989 + HMPREF1078_RS06965 0.64 +0.4 802,176 + HMPREF1078_RS06965 0.88 -1.5 802,243 + -0.1 802,268 + -1.5 802,268 + -0.7 802,268 + -0.9 802,303 + +0.7 802,312 + +3.1 802,330 - -0.2 802,343 - -0.1 802,343 - +0.8 802,344 + +1.7 802,373 - -0.4 802,432 + -0.3 802,433 - +1.7 802,460 + +0.0
Or see this region's nucleotide sequence