Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06330 and HMPREF1078_RS06335 are separated by 99 nucleotides HMPREF1078_RS06335 and HMPREF1078_RS06340 are separated by 334 nucleotides
HMPREF1078_RS06330: HMPREF1078_RS06330 - polyprenyl synthetase family protein, at 627,467 to 628,441
_RS06330
HMPREF1078_RS06335: HMPREF1078_RS06335 - DNA polymerase I, at 628,541 to 631,363
_RS06335
HMPREF1078_RS06340: HMPREF1078_RS06340 - hypothetical protein, at 631,698 to 632,369
_RS06340
Position (kb) 628
629
630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 628.442 kb on - strand at 628.484 kb on - strand at 629.582 kb on + strand, within HMPREF1078_RS06335 at 629.671 kb on + strand, within HMPREF1078_RS06335 at 629.671 kb on + strand, within HMPREF1078_RS06335 at 629.671 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.673 kb on + strand, within HMPREF1078_RS06335 at 629.735 kb on + strand, within HMPREF1078_RS06335 at 629.736 kb on - strand, within HMPREF1078_RS06335 at 629.949 kb on - strand, within HMPREF1078_RS06335 at 629.963 kb on + strand, within HMPREF1078_RS06335 at 629.963 kb on + strand, within HMPREF1078_RS06335 at 629.969 kb on - strand, within HMPREF1078_RS06335 at 629.969 kb on - strand, within HMPREF1078_RS06335 at 629.972 kb on + strand, within HMPREF1078_RS06335 at 630.105 kb on - strand, within HMPREF1078_RS06335 at 630.171 kb on + strand, within HMPREF1078_RS06335 at 630.171 kb on + strand, within HMPREF1078_RS06335 at 630.196 kb on + strand, within HMPREF1078_RS06335 at 630.281 kb on + strand, within HMPREF1078_RS06335 at 630.281 kb on + strand, within HMPREF1078_RS06335 at 630.357 kb on + strand, within HMPREF1078_RS06335 at 630.392 kb on + strand, within HMPREF1078_RS06335 at 630.392 kb on + strand, within HMPREF1078_RS06335 at 630.393 kb on - strand, within HMPREF1078_RS06335 at 630.395 kb on - strand, within HMPREF1078_RS06335 at 630.492 kb on - strand, within HMPREF1078_RS06335 at 630.548 kb on + strand, within HMPREF1078_RS06335 at 630.554 kb on + strand, within HMPREF1078_RS06335 at 630.674 kb on - strand, within HMPREF1078_RS06335 at 630.674 kb on - strand, within HMPREF1078_RS06335 at 631.020 kb on + strand, within HMPREF1078_RS06335 at 631.020 kb on + strand, within HMPREF1078_RS06335 at 631.020 kb on + strand, within HMPREF1078_RS06335 at 631.031 kb on + strand, within HMPREF1078_RS06335 at 631.374 kb on + strand at 631.374 kb on + strand at 631.375 kb on - strand at 631.397 kb on + strand at 631.397 kb on + strand at 631.397 kb on + strand at 631.399 kb on + strand at 631.400 kb on - strand at 631.400 kb on - strand at 631.404 kb on + strand at 631.451 kb on - strand at 631.469 kb on + strand at 631.469 kb on + strand at 631.470 kb on - strand at 631.470 kb on - strand at 631.478 kb on + strand at 631.478 kb on + strand at 631.478 kb on + strand at 631.518 kb on + strand at 631.518 kb on + strand at 631.545 kb on + strand at 631.547 kb on + strand at 631.548 kb on - strand at 631.548 kb on - strand at 631.549 kb on + strand at 631.549 kb on + strand at 631.549 kb on + strand at 631.551 kb on + strand at 631.551 kb on + strand at 631.552 kb on - strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.557 kb on + strand at 631.557 kb on + strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.560 kb on + strand at 631.561 kb on - strand at 631.562 kb on + strand at 631.563 kb on - strand at 631.564 kb on + strand at 631.565 kb on - strand at 631.590 kb on - strand at 631.600 kb on + strand at 631.601 kb on - strand at 631.601 kb on - strand at 631.698 kb on - strand at 631.779 kb on + strand, within HMPREF1078_RS06340 at 631.779 kb on + strand, within HMPREF1078_RS06340 at 631.780 kb on - strand, within HMPREF1078_RS06340 at 631.780 kb on - strand, within HMPREF1078_RS06340 at 631.786 kb on - strand, within HMPREF1078_RS06340 at 631.789 kb on + strand, within HMPREF1078_RS06340 at 631.896 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.919 kb on + strand, within HMPREF1078_RS06340 at 631.919 kb on + strand, within HMPREF1078_RS06340 at 631.934 kb on + strand, within HMPREF1078_RS06340 at 632.028 kb on - strand, within HMPREF1078_RS06340 at 632.028 kb on - strand, within HMPREF1078_RS06340 at 632.030 kb on - strand, within HMPREF1078_RS06340 at 632.050 kb on - strand, within HMPREF1078_RS06340 at 632.071 kb on + strand, within HMPREF1078_RS06340 at 632.091 kb on + strand, within HMPREF1078_RS06340 at 632.110 kb on - strand, within HMPREF1078_RS06340 at 632.177 kb on - strand, within HMPREF1078_RS06340 at 632.237 kb on - strand, within HMPREF1078_RS06340 at 632.238 kb on + strand, within HMPREF1078_RS06340 at 632.288 kb on - strand, within HMPREF1078_RS06340 at 632.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 628,442 - +1.4 628,484 - +0.1 629,582 + HMPREF1078_RS06335 0.37 +0.1 629,671 + HMPREF1078_RS06335 0.40 -0.5 629,671 + HMPREF1078_RS06335 0.40 -0.9 629,671 + HMPREF1078_RS06335 0.40 -0.3 629,673 + HMPREF1078_RS06335 0.40 +0.2 629,673 + HMPREF1078_RS06335 0.40 +0.7 629,673 + HMPREF1078_RS06335 0.40 +0.1 629,673 + HMPREF1078_RS06335 0.40 -0.3 629,673 + HMPREF1078_RS06335 0.40 +0.8 629,673 + HMPREF1078_RS06335 0.40 -0.1 629,673 + HMPREF1078_RS06335 0.40 -0.9 629,673 + HMPREF1078_RS06335 0.40 -2.2 629,673 + HMPREF1078_RS06335 0.40 -2.5 629,673 + HMPREF1078_RS06335 0.40 -0.6 629,735 + HMPREF1078_RS06335 0.42 -1.1 629,736 - HMPREF1078_RS06335 0.42 +1.7 629,949 - HMPREF1078_RS06335 0.50 +0.2 629,963 + HMPREF1078_RS06335 0.50 -2.4 629,963 + HMPREF1078_RS06335 0.50 -2.4 629,969 - HMPREF1078_RS06335 0.51 +1.7 629,969 - HMPREF1078_RS06335 0.51 -0.6 629,972 + HMPREF1078_RS06335 0.51 -0.8 630,105 - HMPREF1078_RS06335 0.55 -0.6 630,171 + HMPREF1078_RS06335 0.58 +0.1 630,171 + HMPREF1078_RS06335 0.58 +1.1 630,196 + HMPREF1078_RS06335 0.59 +0.3 630,281 + HMPREF1078_RS06335 0.62 +0.5 630,281 + HMPREF1078_RS06335 0.62 -0.8 630,357 + HMPREF1078_RS06335 0.64 -2.0 630,392 + HMPREF1078_RS06335 0.66 -3.1 630,392 + HMPREF1078_RS06335 0.66 +0.1 630,393 - HMPREF1078_RS06335 0.66 +0.7 630,395 - HMPREF1078_RS06335 0.66 -0.3 630,492 - HMPREF1078_RS06335 0.69 -0.9 630,548 + HMPREF1078_RS06335 0.71 -2.1 630,554 + HMPREF1078_RS06335 0.71 -0.2 630,674 - HMPREF1078_RS06335 0.76 +0.3 630,674 - HMPREF1078_RS06335 0.76 +1.7 631,020 + HMPREF1078_RS06335 0.88 +1.0 631,020 + HMPREF1078_RS06335 0.88 +0.1 631,020 + HMPREF1078_RS06335 0.88 +0.2 631,031 + HMPREF1078_RS06335 0.88 -2.3 631,374 + +0.1 631,374 + +0.9 631,375 - -2.5 631,397 + -0.9 631,397 + -0.9 631,397 + -2.6 631,399 + -0.6 631,400 - -0.9 631,400 - -1.1 631,404 + -0.3 631,451 - -1.4 631,469 + +1.0 631,469 + +0.1 631,470 - -2.7 631,470 - -0.6 631,478 + -1.1 631,478 + -0.0 631,478 + -1.2 631,518 + +0.3 631,518 + +1.3 631,545 + +2.4 631,547 + +0.9 631,548 - +1.5 631,548 - +1.0 631,549 + -0.4 631,549 + -3.9 631,549 + -1.5 631,551 + +2.7 631,551 + -1.0 631,552 - -0.6 631,553 + +0.1 631,553 + -0.2 631,553 + -0.3 631,553 + +0.3 631,553 + +1.2 631,553 + -0.2 631,553 + -0.6 631,557 + +0.6 631,557 + +0.3 631,558 - -0.5 631,558 - -0.1 631,558 - -0.8 631,560 + -1.0 631,561 - +0.1 631,562 + +0.1 631,563 - +3.7 631,564 + -1.5 631,565 - -0.5 631,590 - +1.9 631,600 + +0.0 631,601 - +0.2 631,601 - +1.1 631,698 - -0.9 631,779 + HMPREF1078_RS06340 0.12 -1.1 631,779 + HMPREF1078_RS06340 0.12 +0.1 631,780 - HMPREF1078_RS06340 0.12 +0.7 631,780 - HMPREF1078_RS06340 0.12 +1.7 631,786 - HMPREF1078_RS06340 0.13 -1.6 631,789 + HMPREF1078_RS06340 0.14 -0.2 631,896 + HMPREF1078_RS06340 0.29 +0.1 631,899 + HMPREF1078_RS06340 0.30 -1.3 631,899 + HMPREF1078_RS06340 0.30 -1.2 631,899 + HMPREF1078_RS06340 0.30 -0.6 631,900 - HMPREF1078_RS06340 0.30 +1.7 631,900 - HMPREF1078_RS06340 0.30 -1.0 631,900 - HMPREF1078_RS06340 0.30 -1.6 631,919 + HMPREF1078_RS06340 0.33 -1.3 631,919 + HMPREF1078_RS06340 0.33 +0.3 631,934 + HMPREF1078_RS06340 0.35 -0.2 632,028 - HMPREF1078_RS06340 0.49 -0.5 632,028 - HMPREF1078_RS06340 0.49 -0.8 632,030 - HMPREF1078_RS06340 0.49 +2.4 632,050 - HMPREF1078_RS06340 0.52 -1.0 632,071 + HMPREF1078_RS06340 0.56 -1.3 632,091 + HMPREF1078_RS06340 0.58 +0.4 632,110 - HMPREF1078_RS06340 0.61 +0.1 632,177 - HMPREF1078_RS06340 0.71 +0.1 632,237 - HMPREF1078_RS06340 0.80 +0.5 632,238 + HMPREF1078_RS06340 0.80 -1.8 632,288 - HMPREF1078_RS06340 0.88 -1.6 632,321 - -0.3
Or see this region's nucleotide sequence