Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04915 and HMPREF1078_RS04920 overlap by 8 nucleotides HMPREF1078_RS04920 and HMPREF1078_RS04925 are separated by 190 nucleotides HMPREF1078_RS04925 and HMPREF1078_RS04930 are separated by 85 nucleotides
HMPREF1078_RS04915: HMPREF1078_RS04915 - CidA/LrgA family protein, at 239,807 to 240,157
_RS04915
HMPREF1078_RS04920: HMPREF1078_RS04920 - LrgB family protein, at 240,150 to 240,848
_RS04920
HMPREF1078_RS04925: HMPREF1078_RS04925 - elongation factor P, at 241,039 to 241,602
_RS04925
HMPREF1078_RS04930: HMPREF1078_RS04930 - DNA repair protein RadC, at 241,688 to 242,368
_RS04930
Position (kb) 240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.210 kb on + strand at 239.210 kb on + strand at 239.215 kb on + strand at 239.257 kb on - strand at 239.288 kb on + strand at 239.300 kb on + strand at 239.312 kb on - strand at 239.467 kb on + strand at 239.467 kb on + strand at 239.468 kb on - strand at 239.469 kb on + strand at 239.517 kb on + strand at 239.518 kb on - strand at 239.520 kb on - strand at 239.534 kb on - strand at 239.534 kb on - strand at 239.771 kb on + strand at 239.800 kb on + strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.812 kb on - strand at 239.812 kb on - strand at 239.814 kb on + strand at 239.814 kb on + strand at 239.881 kb on + strand, within HMPREF1078_RS04915 at 239.890 kb on + strand, within HMPREF1078_RS04915 at 239.890 kb on + strand, within HMPREF1078_RS04915 at 239.913 kb on + strand, within HMPREF1078_RS04915 at 239.914 kb on - strand, within HMPREF1078_RS04915 at 239.947 kb on + strand, within HMPREF1078_RS04915 at 240.108 kb on + strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.239 kb on + strand, within HMPREF1078_RS04920 at 240.263 kb on + strand, within HMPREF1078_RS04920 at 240.264 kb on - strand, within HMPREF1078_RS04920 at 240.271 kb on + strand, within HMPREF1078_RS04920 at 240.272 kb on - strand, within HMPREF1078_RS04920 at 240.282 kb on - strand, within HMPREF1078_RS04920 at 240.282 kb on - strand, within HMPREF1078_RS04920 at 240.381 kb on + strand, within HMPREF1078_RS04920 at 240.381 kb on + strand, within HMPREF1078_RS04920 at 240.382 kb on - strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.390 kb on + strand, within HMPREF1078_RS04920 at 240.478 kb on + strand, within HMPREF1078_RS04920 at 240.611 kb on - strand, within HMPREF1078_RS04920 at 240.625 kb on + strand, within HMPREF1078_RS04920 at 240.682 kb on + strand, within HMPREF1078_RS04920 at 240.725 kb on + strand, within HMPREF1078_RS04920 at 240.831 kb on - strand at 240.833 kb on + strand at 240.881 kb on + strand at 240.882 kb on - strand at 240.893 kb on - strand at 240.927 kb on + strand at 240.927 kb on + strand at 240.938 kb on - strand at 240.953 kb on + strand at 240.953 kb on + strand at 240.954 kb on - strand at 241.012 kb on + strand at 241.018 kb on + strand at 241.018 kb on + strand at 241.019 kb on - strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.021 kb on - strand at 241.021 kb on - strand at 241.023 kb on + strand at 241.024 kb on - strand at 241.024 kb on - strand at 241.026 kb on - strand at 241.035 kb on + strand at 241.038 kb on + strand at 241.039 kb on - strand at 241.044 kb on + strand at 241.045 kb on - strand at 241.074 kb on + strand at 241.075 kb on - strand at 241.075 kb on - strand at 241.089 kb on + strand at 241.090 kb on - strand at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.121 kb on + strand, within HMPREF1078_RS04925 at 241.152 kb on + strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.173 kb on - strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.232 kb on + strand, within HMPREF1078_RS04925 at 241.246 kb on + strand, within HMPREF1078_RS04925 at 241.252 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.258 kb on + strand, within HMPREF1078_RS04925 at 241.259 kb on - strand, within HMPREF1078_RS04925 at 241.276 kb on + strand, within HMPREF1078_RS04925 at 241.308 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.422 kb on - strand, within HMPREF1078_RS04925 at 241.444 kb on + strand, within HMPREF1078_RS04925 at 241.447 kb on - strand, within HMPREF1078_RS04925 at 241.470 kb on + strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.503 kb on - strand, within HMPREF1078_RS04925 at 241.520 kb on + strand, within HMPREF1078_RS04925 at 241.566 kb on + strand at 241.566 kb on + strand at 241.582 kb on + strand at 241.583 kb on - strand at 241.583 kb on - strand at 241.586 kb on + strand at 241.587 kb on - strand at 241.594 kb on - strand at 241.605 kb on + strand at 241.606 kb on - strand at 241.607 kb on + strand at 241.608 kb on - strand at 241.614 kb on + strand at 241.614 kb on + strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.621 kb on + strand at 241.622 kb on - strand at 241.628 kb on + strand at 241.631 kb on - strand at 241.643 kb on + strand at 241.643 kb on + strand at 241.644 kb on - strand at 241.644 kb on - strand at 241.651 kb on - strand at 241.657 kb on + strand at 241.657 kb on + strand at 241.658 kb on - strand at 241.688 kb on - strand at 241.688 kb on - strand at 241.695 kb on + strand at 241.737 kb on + strand at 241.747 kb on + strand at 241.748 kb on - strand at 241.748 kb on - strand at 241.774 kb on - strand, within HMPREF1078_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 239,210 + +2.0 239,210 + -0.3 239,215 + -0.2 239,257 - +0.3 239,288 + +1.8 239,300 + -0.7 239,312 - -1.6 239,467 + -2.3 239,467 + -0.7 239,468 - -0.0 239,469 + -0.3 239,517 + -0.6 239,518 - -0.2 239,520 - -1.9 239,534 - -1.0 239,534 - +0.8 239,771 + -1.2 239,800 + -0.0 239,801 - -0.6 239,801 - -0.5 239,801 - -0.4 239,801 - -2.2 239,812 - -0.9 239,812 - -1.4 239,814 + -2.8 239,814 + -0.6 239,881 + HMPREF1078_RS04915 0.21 -0.3 239,890 + HMPREF1078_RS04915 0.24 +0.0 239,890 + HMPREF1078_RS04915 0.24 +0.3 239,913 + HMPREF1078_RS04915 0.30 -1.2 239,914 - HMPREF1078_RS04915 0.30 -1.6 239,947 + HMPREF1078_RS04915 0.40 -0.9 240,108 + HMPREF1078_RS04915 0.86 +0.3 240,109 - HMPREF1078_RS04915 0.86 -1.2 240,109 - HMPREF1078_RS04915 0.86 -1.8 240,109 - HMPREF1078_RS04915 0.86 -1.8 240,239 + HMPREF1078_RS04920 0.13 +0.9 240,263 + HMPREF1078_RS04920 0.16 -2.6 240,264 - HMPREF1078_RS04920 0.16 -0.0 240,271 + HMPREF1078_RS04920 0.17 +0.3 240,272 - HMPREF1078_RS04920 0.17 +0.2 240,282 - HMPREF1078_RS04920 0.19 +1.8 240,282 - HMPREF1078_RS04920 0.19 -0.2 240,381 + HMPREF1078_RS04920 0.33 -0.6 240,381 + HMPREF1078_RS04920 0.33 -0.5 240,382 - HMPREF1078_RS04920 0.33 -2.2 240,385 + HMPREF1078_RS04920 0.34 -0.3 240,385 + HMPREF1078_RS04920 0.34 +1.1 240,385 + HMPREF1078_RS04920 0.34 -0.1 240,386 - HMPREF1078_RS04920 0.34 -0.1 240,386 - HMPREF1078_RS04920 0.34 +0.7 240,386 - HMPREF1078_RS04920 0.34 -0.7 240,386 - HMPREF1078_RS04920 0.34 +1.2 240,390 + HMPREF1078_RS04920 0.34 -0.4 240,478 + HMPREF1078_RS04920 0.47 +2.6 240,611 - HMPREF1078_RS04920 0.66 -0.2 240,625 + HMPREF1078_RS04920 0.68 +1.1 240,682 + HMPREF1078_RS04920 0.76 +0.3 240,725 + HMPREF1078_RS04920 0.82 -0.2 240,831 - -0.8 240,833 + +1.3 240,881 + +1.3 240,882 - -0.4 240,893 - +0.5 240,927 + -1.1 240,927 + -1.3 240,938 - +0.2 240,953 + +0.2 240,953 + -0.6 240,954 - -0.7 241,012 + -1.2 241,018 + -0.7 241,018 + -2.0 241,019 - +0.8 241,020 + -0.3 241,020 + -2.5 241,020 + +0.2 241,020 + +1.8 241,021 - +0.2 241,021 - +0.2 241,023 + +2.2 241,024 - +0.8 241,024 - +0.2 241,026 - +1.8 241,035 + +1.8 241,038 + -0.8 241,039 - -2.8 241,044 + +0.2 241,045 - -0.2 241,074 + +0.8 241,075 - -0.6 241,075 - -2.0 241,089 + -0.6 241,090 - -1.7 241,096 + HMPREF1078_RS04925 0.10 -1.0 241,096 + HMPREF1078_RS04925 0.10 -2.1 241,121 + HMPREF1078_RS04925 0.15 -0.6 241,152 + HMPREF1078_RS04925 0.20 -0.2 241,153 - HMPREF1078_RS04925 0.20 -2.0 241,153 - HMPREF1078_RS04925 0.20 +0.8 241,173 - HMPREF1078_RS04925 0.24 -1.2 241,226 + HMPREF1078_RS04925 0.33 -0.2 241,226 + HMPREF1078_RS04925 0.33 +0.8 241,232 + HMPREF1078_RS04925 0.34 -1.0 241,246 + HMPREF1078_RS04925 0.37 -0.2 241,252 + HMPREF1078_RS04925 0.38 -1.2 241,254 + HMPREF1078_RS04925 0.38 -1.6 241,254 + HMPREF1078_RS04925 0.38 -1.2 241,254 + HMPREF1078_RS04925 0.38 +0.8 241,254 + HMPREF1078_RS04925 0.38 +1.8 241,254 + HMPREF1078_RS04925 0.38 -1.0 241,254 + HMPREF1078_RS04925 0.38 -0.2 241,254 + HMPREF1078_RS04925 0.38 +1.8 241,254 + HMPREF1078_RS04925 0.38 -1.8 241,254 + HMPREF1078_RS04925 0.38 -1.6 241,254 + HMPREF1078_RS04925 0.38 -0.2 241,255 - HMPREF1078_RS04925 0.38 +1.8 241,255 - HMPREF1078_RS04925 0.38 -1.0 241,255 - HMPREF1078_RS04925 0.38 -1.2 241,255 - HMPREF1078_RS04925 0.38 -1.2 241,255 - HMPREF1078_RS04925 0.38 +0.2 241,255 - HMPREF1078_RS04925 0.38 +0.8 241,255 - HMPREF1078_RS04925 0.38 -0.8 241,255 - HMPREF1078_RS04925 0.38 +1.8 241,258 + HMPREF1078_RS04925 0.39 -1.7 241,259 - HMPREF1078_RS04925 0.39 -0.6 241,276 + HMPREF1078_RS04925 0.42 +0.2 241,308 + HMPREF1078_RS04925 0.48 -0.2 241,413 + HMPREF1078_RS04925 0.66 +0.8 241,413 + HMPREF1078_RS04925 0.66 -0.6 241,413 + HMPREF1078_RS04925 0.66 -0.2 241,413 + HMPREF1078_RS04925 0.66 -1.0 241,422 - HMPREF1078_RS04925 0.68 -1.0 241,444 + HMPREF1078_RS04925 0.72 -0.2 241,447 - HMPREF1078_RS04925 0.72 -0.6 241,470 + HMPREF1078_RS04925 0.76 -2.4 241,471 - HMPREF1078_RS04925 0.77 +1.8 241,471 - HMPREF1078_RS04925 0.77 +0.2 241,503 - HMPREF1078_RS04925 0.82 -0.8 241,520 + HMPREF1078_RS04925 0.85 -0.8 241,566 + +1.8 241,566 + -0.8 241,582 + -1.0 241,583 - +0.2 241,583 - -1.0 241,586 + -1.6 241,587 - -0.2 241,594 - -0.3 241,605 + -1.4 241,606 - +0.0 241,607 + +0.4 241,608 - -0.2 241,614 + +0.8 241,614 + +0.2 241,615 - -1.8 241,615 - -0.9 241,615 - -1.2 241,621 + +1.2 241,622 - -1.2 241,628 + -0.4 241,631 - +0.6 241,643 + +0.6 241,643 + -0.8 241,644 - -1.0 241,644 - -2.1 241,651 - -0.7 241,657 + +0.8 241,657 + +0.9 241,658 - -0.9 241,688 - -0.5 241,688 - -1.2 241,695 + -0.7 241,737 + -0.6 241,747 + -0.7 241,748 - -0.8 241,748 - -0.1 241,774 - HMPREF1078_RS04930 0.13 +0.5
Or see this region's nucleotide sequence