Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03090 and HMPREF1078_RS19720 are separated by 144 nucleotides HMPREF1078_RS19720 and HMPREF1078_RS03095 are separated by 18 nucleotides HMPREF1078_RS03095 and HMPREF1078_RS03100 are separated by 205 nucleotides HMPREF1078_RS03100 and HMPREF1078_RS03105 overlap by 4 nucleotides
HMPREF1078_RS03090: HMPREF1078_RS03090 - helix-turn-helix transcriptional regulator, at 738,644 to 739,102
_RS03090
HMPREF1078_RS19720: HMPREF1078_RS19720 - hypothetical protein, at 739,247 to 739,438
_RS19720
HMPREF1078_RS03095: HMPREF1078_RS03095 - hypothetical protein, at 739,457 to 739,771
_RS03095
HMPREF1078_RS03100: HMPREF1078_RS03100 - hypothetical protein, at 739,977 to 740,180
_RS03100
HMPREF1078_RS03105: HMPREF1078_RS03105 - CHC2 zinc finger domain-containing protein, at 740,177 to 743,455
_RS03105
Position (kb) 739
740
741 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 738.977 kb on + strand, within HMPREF1078_RS03090 at 739.007 kb on + strand, within HMPREF1078_RS03090 at 739.048 kb on + strand, within HMPREF1078_RS03090 at 739.048 kb on + strand, within HMPREF1078_RS03090 at 739.049 kb on - strand, within HMPREF1078_RS03090 at 739.073 kb on + strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.088 kb on + strand at 739.088 kb on + strand at 739.089 kb on - strand at 739.089 kb on - strand at 739.097 kb on - strand at 739.120 kb on + strand at 739.121 kb on - strand at 739.121 kb on - strand at 739.190 kb on - strand at 739.225 kb on - strand at 739.246 kb on + strand at 739.296 kb on + strand, within HMPREF1078_RS19720 at 739.372 kb on + strand, within HMPREF1078_RS19720 at 739.373 kb on - strand, within HMPREF1078_RS19720 at 739.457 kb on - strand at 739.487 kb on - strand at 739.494 kb on - strand, within HMPREF1078_RS03095 at 739.779 kb on - strand at 739.834 kb on - strand at 739.860 kb on + strand at 739.907 kb on - strand at 739.908 kb on + strand at 739.914 kb on + strand at 739.921 kb on + strand at 739.972 kb on + strand at 739.973 kb on - strand at 740.017 kb on - strand, within HMPREF1078_RS03100 at 740.090 kb on + strand, within HMPREF1078_RS03100 at 740.091 kb on - strand, within HMPREF1078_RS03100 at 740.109 kb on - strand, within HMPREF1078_RS03100 at 740.171 kb on + strand at 740.206 kb on - strand at 740.229 kb on + strand at 740.229 kb on + strand at 740.241 kb on - strand at 740.271 kb on - strand at 740.356 kb on + strand at 740.378 kb on - strand at 740.383 kb on + strand at 740.386 kb on - strand at 740.460 kb on - strand at 740.460 kb on - strand at 740.460 kb on - strand at 740.495 kb on - strand at 740.521 kb on - strand, within HMPREF1078_RS03105 at 740.604 kb on - strand, within HMPREF1078_RS03105 at 740.649 kb on + strand, within HMPREF1078_RS03105 at 740.664 kb on - strand, within HMPREF1078_RS03105 at 740.724 kb on - strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.785 kb on + strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.828 kb on + strand, within HMPREF1078_RS03105 at 740.841 kb on - strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.958 kb on - strand, within HMPREF1078_RS03105 at 740.960 kb on + strand, within HMPREF1078_RS03105 at 740.960 kb on + strand, within HMPREF1078_RS03105 at 740.961 kb on - strand, within HMPREF1078_RS03105 at 740.961 kb on - strand, within HMPREF1078_RS03105 at 740.962 kb on + strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 741.024 kb on + strand, within HMPREF1078_RS03105 at 741.077 kb on + strand, within HMPREF1078_RS03105 at 741.077 kb on + strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.081 kb on + strand, within HMPREF1078_RS03105 at 741.081 kb on + strand, within HMPREF1078_RS03105 at 741.082 kb on - strand, within HMPREF1078_RS03105 at 741.082 kb on - strand, within HMPREF1078_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 738,977 + HMPREF1078_RS03090 0.73 -2.6 739,007 + HMPREF1078_RS03090 0.79 -3.3 739,048 + HMPREF1078_RS03090 0.88 -1.9 739,048 + HMPREF1078_RS03090 0.88 -3.1 739,049 - HMPREF1078_RS03090 0.88 -0.5 739,073 + -3.6 739,074 - -1.6 739,074 - -3.7 739,074 - -4.8 739,074 - -1.8 739,088 + -1.2 739,088 + -1.0 739,089 - +0.8 739,089 - -0.5 739,097 - -3.5 739,120 + -2.7 739,121 - +1.8 739,121 - +1.2 739,190 - -0.5 739,225 - -1.0 739,246 + -1.3 739,296 + HMPREF1078_RS19720 0.26 +1.4 739,372 + HMPREF1078_RS19720 0.65 -1.0 739,373 - HMPREF1078_RS19720 0.66 +0.3 739,457 - -0.2 739,487 - +0.9 739,494 - HMPREF1078_RS03095 0.12 -1.0 739,779 - +0.1 739,834 - +0.2 739,860 + -1.0 739,907 - -1.0 739,908 + -0.4 739,914 + +0.8 739,921 + +0.2 739,972 + -0.2 739,973 - -2.1 740,017 - HMPREF1078_RS03100 0.20 +0.5 740,090 + HMPREF1078_RS03100 0.55 +0.7 740,091 - HMPREF1078_RS03100 0.56 +2.7 740,109 - HMPREF1078_RS03100 0.65 +0.2 740,171 + -0.5 740,206 - +1.2 740,229 + -0.7 740,229 + +0.5 740,241 - +0.8 740,271 - +1.2 740,356 + -1.4 740,378 - -0.8 740,383 + +0.8 740,386 - -0.5 740,460 - +0.8 740,460 - -1.3 740,460 - +1.6 740,495 - +1.8 740,521 - HMPREF1078_RS03105 0.10 -0.3 740,604 - HMPREF1078_RS03105 0.13 -0.5 740,649 + HMPREF1078_RS03105 0.14 -2.0 740,664 - HMPREF1078_RS03105 0.15 -0.2 740,724 - HMPREF1078_RS03105 0.17 -2.2 740,765 + HMPREF1078_RS03105 0.18 +0.7 740,765 + HMPREF1078_RS03105 0.18 +0.8 740,765 + HMPREF1078_RS03105 0.18 +1.8 740,766 - HMPREF1078_RS03105 0.18 +0.4 740,766 - HMPREF1078_RS03105 0.18 -0.2 740,766 - HMPREF1078_RS03105 0.18 +1.1 740,785 + HMPREF1078_RS03105 0.19 -0.5 740,786 - HMPREF1078_RS03105 0.19 +0.4 740,786 - HMPREF1078_RS03105 0.19 -0.2 740,786 - HMPREF1078_RS03105 0.19 +1.6 740,786 - HMPREF1078_RS03105 0.19 +1.8 740,828 + HMPREF1078_RS03105 0.20 -1.3 740,841 - HMPREF1078_RS03105 0.20 +1.7 740,870 + HMPREF1078_RS03105 0.21 +0.2 740,870 + HMPREF1078_RS03105 0.21 +1.8 740,870 + HMPREF1078_RS03105 0.21 +0.6 740,871 - HMPREF1078_RS03105 0.21 -2.1 740,871 - HMPREF1078_RS03105 0.21 +4.0 740,871 - HMPREF1078_RS03105 0.21 -2.0 740,958 - HMPREF1078_RS03105 0.24 +0.2 740,960 + HMPREF1078_RS03105 0.24 +2.5 740,960 + HMPREF1078_RS03105 0.24 -0.8 740,961 - HMPREF1078_RS03105 0.24 +3.0 740,961 - HMPREF1078_RS03105 0.24 -1.3 740,962 + HMPREF1078_RS03105 0.24 +0.8 740,963 - HMPREF1078_RS03105 0.24 +1.6 740,963 - HMPREF1078_RS03105 0.24 -1.0 740,963 - HMPREF1078_RS03105 0.24 +1.1 741,024 + HMPREF1078_RS03105 0.26 -1.5 741,077 + HMPREF1078_RS03105 0.27 +1.3 741,077 + HMPREF1078_RS03105 0.27 -0.8 741,078 - HMPREF1078_RS03105 0.27 -0.5 741,078 - HMPREF1078_RS03105 0.27 +0.2 741,078 - HMPREF1078_RS03105 0.27 +1.8 741,081 + HMPREF1078_RS03105 0.28 -2.0 741,081 + HMPREF1078_RS03105 0.28 -0.3 741,082 - HMPREF1078_RS03105 0.28 -1.0 741,082 - HMPREF1078_RS03105 0.28 +2.8
Or see this region's nucleotide sequence