Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03040 and HMPREF1078_RS03045 are separated by 42 nucleotides HMPREF1078_RS03045 and HMPREF1078_RS03050 overlap by 8 nucleotides
HMPREF1078_RS03040: HMPREF1078_RS03040 - hypothetical protein, at 715,755 to 717,767
_RS03040
HMPREF1078_RS03045: HMPREF1078_RS03045 - hypothetical protein, at 717,810 to 719,735
_RS03045
HMPREF1078_RS03050: HMPREF1078_RS03050 - hypothetical protein, at 719,728 to 730,944
_RS03050
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 716.856 kb on - strand, within HMPREF1078_RS03040 at 716.883 kb on - strand, within HMPREF1078_RS03040 at 716.937 kb on - strand, within HMPREF1078_RS03040 at 717.041 kb on - strand, within HMPREF1078_RS03040 at 717.041 kb on - strand, within HMPREF1078_RS03040 at 717.155 kb on - strand, within HMPREF1078_RS03040 at 717.188 kb on + strand, within HMPREF1078_RS03040 at 717.292 kb on + strand, within HMPREF1078_RS03040 at 717.293 kb on - strand, within HMPREF1078_RS03040 at 717.293 kb on - strand, within HMPREF1078_RS03040 at 717.329 kb on + strand, within HMPREF1078_RS03040 at 717.330 kb on - strand, within HMPREF1078_RS03040 at 717.330 kb on - strand, within HMPREF1078_RS03040 at 717.330 kb on - strand, within HMPREF1078_RS03040 at 717.390 kb on + strand, within HMPREF1078_RS03040 at 717.391 kb on - strand, within HMPREF1078_RS03040 at 717.407 kb on - strand, within HMPREF1078_RS03040 at 717.418 kb on - strand, within HMPREF1078_RS03040 at 717.429 kb on + strand, within HMPREF1078_RS03040 at 717.509 kb on + strand, within HMPREF1078_RS03040 at 717.510 kb on - strand, within HMPREF1078_RS03040 at 717.510 kb on - strand, within HMPREF1078_RS03040 at 717.510 kb on - strand, within HMPREF1078_RS03040 at 717.516 kb on - strand, within HMPREF1078_RS03040 at 717.552 kb on + strand, within HMPREF1078_RS03040 at 717.552 kb on + strand, within HMPREF1078_RS03040 at 717.614 kb on + strand at 717.694 kb on + strand at 717.713 kb on - strand at 717.725 kb on - strand at 717.728 kb on + strand at 717.729 kb on - strand at 717.759 kb on - strand at 717.759 kb on - strand at 717.759 kb on - strand at 717.764 kb on - strand at 717.764 kb on - strand at 717.811 kb on + strand at 717.828 kb on + strand at 717.828 kb on + strand at 717.829 kb on - strand at 717.863 kb on + strand at 717.911 kb on + strand at 717.923 kb on + strand at 717.923 kb on + strand at 717.973 kb on - strand at 717.989 kb on - strand at 718.050 kb on - strand, within HMPREF1078_RS03045 at 718.053 kb on - strand, within HMPREF1078_RS03045 at 718.054 kb on + strand, within HMPREF1078_RS03045 at 718.054 kb on + strand, within HMPREF1078_RS03045 at 718.054 kb on + strand, within HMPREF1078_RS03045 at 718.055 kb on - strand, within HMPREF1078_RS03045 at 718.055 kb on - strand, within HMPREF1078_RS03045 at 718.055 kb on - strand, within HMPREF1078_RS03045 at 718.063 kb on - strand, within HMPREF1078_RS03045 at 718.094 kb on - strand, within HMPREF1078_RS03045 at 718.135 kb on - strand, within HMPREF1078_RS03045 at 718.135 kb on - strand, within HMPREF1078_RS03045 at 718.135 kb on - strand, within HMPREF1078_RS03045 at 718.135 kb on - strand, within HMPREF1078_RS03045 at 718.136 kb on + strand, within HMPREF1078_RS03045 at 718.136 kb on + strand, within HMPREF1078_RS03045 at 718.136 kb on + strand, within HMPREF1078_RS03045 at 718.137 kb on - strand, within HMPREF1078_RS03045 at 718.137 kb on - strand, within HMPREF1078_RS03045 at 718.137 kb on - strand, within HMPREF1078_RS03045 at 718.176 kb on + strand, within HMPREF1078_RS03045 at 718.239 kb on - strand, within HMPREF1078_RS03045 at 718.239 kb on - strand, within HMPREF1078_RS03045 at 718.239 kb on - strand, within HMPREF1078_RS03045 at 718.328 kb on + strand, within HMPREF1078_RS03045 at 718.328 kb on + strand, within HMPREF1078_RS03045 at 718.329 kb on - strand, within HMPREF1078_RS03045 at 718.338 kb on - strand, within HMPREF1078_RS03045 at 718.338 kb on - strand, within HMPREF1078_RS03045 at 718.360 kb on - strand, within HMPREF1078_RS03045 at 718.367 kb on - strand, within HMPREF1078_RS03045 at 718.397 kb on - strand, within HMPREF1078_RS03045 at 718.397 kb on - strand, within HMPREF1078_RS03045 at 718.409 kb on + strand, within HMPREF1078_RS03045 at 718.410 kb on - strand, within HMPREF1078_RS03045 at 718.416 kb on + strand, within HMPREF1078_RS03045 at 718.417 kb on - strand, within HMPREF1078_RS03045 at 718.457 kb on + strand, within HMPREF1078_RS03045 at 718.468 kb on + strand, within HMPREF1078_RS03045 at 718.469 kb on - strand, within HMPREF1078_RS03045 at 718.469 kb on - strand, within HMPREF1078_RS03045 at 718.477 kb on - strand, within HMPREF1078_RS03045 at 718.582 kb on - strand, within HMPREF1078_RS03045 at 718.585 kb on + strand, within HMPREF1078_RS03045 at 718.601 kb on + strand, within HMPREF1078_RS03045 at 718.629 kb on - strand, within HMPREF1078_RS03045 at 718.645 kb on + strand, within HMPREF1078_RS03045 at 718.660 kb on + strand, within HMPREF1078_RS03045 at 718.660 kb on + strand, within HMPREF1078_RS03045 at 718.660 kb on + strand, within HMPREF1078_RS03045 at 718.660 kb on + strand, within HMPREF1078_RS03045 at 718.661 kb on - strand, within HMPREF1078_RS03045 at 718.661 kb on - strand, within HMPREF1078_RS03045 at 718.701 kb on + strand, within HMPREF1078_RS03045 at 718.726 kb on + strand, within HMPREF1078_RS03045 at 718.727 kb on - strand, within HMPREF1078_RS03045 at 718.735 kb on + strand, within HMPREF1078_RS03045 at 718.736 kb on - strand, within HMPREF1078_RS03045 at 718.741 kb on + strand, within HMPREF1078_RS03045 at 718.741 kb on + strand, within HMPREF1078_RS03045 at 718.760 kb on + strand, within HMPREF1078_RS03045 at 718.760 kb on + strand, within HMPREF1078_RS03045 at 718.761 kb on - strand, within HMPREF1078_RS03045 at 718.761 kb on - strand, within HMPREF1078_RS03045 at 718.804 kb on - strand, within HMPREF1078_RS03045 at 718.827 kb on - strand, within HMPREF1078_RS03045 at 718.867 kb on + strand, within HMPREF1078_RS03045 at 718.887 kb on + strand, within HMPREF1078_RS03045 at 718.888 kb on - strand, within HMPREF1078_RS03045 at 718.969 kb on + strand, within HMPREF1078_RS03045 at 719.044 kb on + strand, within HMPREF1078_RS03045 at 719.058 kb on - strand, within HMPREF1078_RS03045 at 719.114 kb on + strand, within HMPREF1078_RS03045 at 719.115 kb on - strand, within HMPREF1078_RS03045 at 719.119 kb on + strand, within HMPREF1078_RS03045 at 719.119 kb on + strand, within HMPREF1078_RS03045 at 719.120 kb on - strand, within HMPREF1078_RS03045 at 719.164 kb on - strand, within HMPREF1078_RS03045 at 719.188 kb on + strand, within HMPREF1078_RS03045 at 719.188 kb on + strand, within HMPREF1078_RS03045 at 719.189 kb on - strand, within HMPREF1078_RS03045 at 719.193 kb on - strand, within HMPREF1078_RS03045 at 719.246 kb on - strand, within HMPREF1078_RS03045 at 719.336 kb on - strand, within HMPREF1078_RS03045 at 719.388 kb on - strand, within HMPREF1078_RS03045 at 719.492 kb on + strand, within HMPREF1078_RS03045 at 719.497 kb on + strand, within HMPREF1078_RS03045 at 719.498 kb on - strand, within HMPREF1078_RS03045 at 719.498 kb on - strand, within HMPREF1078_RS03045 at 719.498 kb on - strand, within HMPREF1078_RS03045 at 719.569 kb on + strand at 719.569 kb on + strand at 719.569 kb on + strand at 719.570 kb on - strand at 719.570 kb on - strand at 719.606 kb on + strand at 719.666 kb on + strand at 719.711 kb on + strand at 719.741 kb on - strand at 719.833 kb on - strand at 719.837 kb on + strand at 719.838 kb on - strand at 719.842 kb on - strand at 719.919 kb on + strand at 719.935 kb on - strand at 719.957 kb on + strand at 719.987 kb on + strand at 719.987 kb on + strand at 719.987 kb on + strand at 720.000 kb on - strand at 720.007 kb on - strand at 720.009 kb on - strand at 720.009 kb on - strand at 720.021 kb on + strand at 720.022 kb on - strand at 720.053 kb on + strand at 720.148 kb on + strand at 720.157 kb on + strand at 720.157 kb on + strand at 720.158 kb on - strand at 720.161 kb on + strand at 720.161 kb on + strand at 720.162 kb on - strand at 720.177 kb on - strand at 720.181 kb on + strand at 720.182 kb on - strand at 720.207 kb on - strand at 720.230 kb on + strand at 720.249 kb on + strand at 720.320 kb on + strand at 720.321 kb on - strand at 720.321 kb on - strand at 720.321 kb on - strand at 720.324 kb on + strand at 720.325 kb on - strand at 720.528 kb on - strand at 720.555 kb on + strand at 720.650 kb on - strand at 720.653 kb on + strand at 720.654 kb on - strand at 720.672 kb on - strand at 720.708 kb on + strand at 720.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 716,856 - HMPREF1078_RS03040 0.55 -1.2 716,883 - HMPREF1078_RS03040 0.56 -0.3 716,937 - HMPREF1078_RS03040 0.59 -0.1 717,041 - HMPREF1078_RS03040 0.64 -1.3 717,041 - HMPREF1078_RS03040 0.64 -0.3 717,155 - HMPREF1078_RS03040 0.70 -1.6 717,188 + HMPREF1078_RS03040 0.71 +0.2 717,292 + HMPREF1078_RS03040 0.76 +1.2 717,293 - HMPREF1078_RS03040 0.76 +1.4 717,293 - HMPREF1078_RS03040 0.76 -0.5 717,329 + HMPREF1078_RS03040 0.78 -0.2 717,330 - HMPREF1078_RS03040 0.78 -0.8 717,330 - HMPREF1078_RS03040 0.78 -0.2 717,330 - HMPREF1078_RS03040 0.78 -2.6 717,390 + HMPREF1078_RS03040 0.81 -0.3 717,391 - HMPREF1078_RS03040 0.81 +0.2 717,407 - HMPREF1078_RS03040 0.82 +2.8 717,418 - HMPREF1078_RS03040 0.83 -0.5 717,429 + HMPREF1078_RS03040 0.83 +1.0 717,509 + HMPREF1078_RS03040 0.87 -0.0 717,510 - HMPREF1078_RS03040 0.87 -0.5 717,510 - HMPREF1078_RS03040 0.87 -1.0 717,510 - HMPREF1078_RS03040 0.87 +2.5 717,516 - HMPREF1078_RS03040 0.87 +2.1 717,552 + HMPREF1078_RS03040 0.89 -0.2 717,552 + HMPREF1078_RS03040 0.89 -1.2 717,614 + -0.5 717,694 + -1.2 717,713 - +0.2 717,725 - -1.0 717,728 + +0.8 717,729 - -1.2 717,759 - -1.0 717,759 - +0.5 717,759 - +0.8 717,764 - +0.2 717,764 - +2.7 717,811 + -2.1 717,828 + -1.2 717,828 + -1.2 717,829 - +0.2 717,863 + +3.4 717,911 + -1.6 717,923 + -1.9 717,923 + +0.8 717,973 - +0.6 717,989 - -2.1 718,050 - HMPREF1078_RS03045 0.12 +0.1 718,053 - HMPREF1078_RS03045 0.13 +0.8 718,054 + HMPREF1078_RS03045 0.13 +0.2 718,054 + HMPREF1078_RS03045 0.13 -0.0 718,054 + HMPREF1078_RS03045 0.13 +3.8 718,055 - HMPREF1078_RS03045 0.13 -1.6 718,055 - HMPREF1078_RS03045 0.13 -2.0 718,055 - HMPREF1078_RS03045 0.13 -0.5 718,063 - HMPREF1078_RS03045 0.13 -0.2 718,094 - HMPREF1078_RS03045 0.15 -0.2 718,135 - HMPREF1078_RS03045 0.17 -0.7 718,135 - HMPREF1078_RS03045 0.17 -1.0 718,135 - HMPREF1078_RS03045 0.17 -1.0 718,135 - HMPREF1078_RS03045 0.17 -1.0 718,136 + HMPREF1078_RS03045 0.17 +0.8 718,136 + HMPREF1078_RS03045 0.17 +1.2 718,136 + HMPREF1078_RS03045 0.17 +0.9 718,137 - HMPREF1078_RS03045 0.17 -1.3 718,137 - HMPREF1078_RS03045 0.17 +1.8 718,137 - HMPREF1078_RS03045 0.17 +0.6 718,176 + HMPREF1078_RS03045 0.19 +4.8 718,239 - HMPREF1078_RS03045 0.22 -0.2 718,239 - HMPREF1078_RS03045 0.22 -0.0 718,239 - HMPREF1078_RS03045 0.22 -0.6 718,328 + HMPREF1078_RS03045 0.27 +1.8 718,328 + HMPREF1078_RS03045 0.27 +0.2 718,329 - HMPREF1078_RS03045 0.27 +1.8 718,338 - HMPREF1078_RS03045 0.27 +0.8 718,338 - HMPREF1078_RS03045 0.27 +1.3 718,360 - HMPREF1078_RS03045 0.29 -0.0 718,367 - HMPREF1078_RS03045 0.29 -2.3 718,397 - HMPREF1078_RS03045 0.30 -1.5 718,397 - HMPREF1078_RS03045 0.30 +0.4 718,409 + HMPREF1078_RS03045 0.31 -1.5 718,410 - HMPREF1078_RS03045 0.31 +1.8 718,416 + HMPREF1078_RS03045 0.31 -1.0 718,417 - HMPREF1078_RS03045 0.32 -0.5 718,457 + HMPREF1078_RS03045 0.34 -1.6 718,468 + HMPREF1078_RS03045 0.34 -1.3 718,469 - HMPREF1078_RS03045 0.34 -1.5 718,469 - HMPREF1078_RS03045 0.34 +0.8 718,477 - HMPREF1078_RS03045 0.35 -0.3 718,582 - HMPREF1078_RS03045 0.40 +0.2 718,585 + HMPREF1078_RS03045 0.40 +0.0 718,601 + HMPREF1078_RS03045 0.41 -1.0 718,629 - HMPREF1078_RS03045 0.43 +2.1 718,645 + HMPREF1078_RS03045 0.43 +1.1 718,660 + HMPREF1078_RS03045 0.44 +2.3 718,660 + HMPREF1078_RS03045 0.44 -0.2 718,660 + HMPREF1078_RS03045 0.44 +1.8 718,660 + HMPREF1078_RS03045 0.44 -1.2 718,661 - HMPREF1078_RS03045 0.44 -0.0 718,661 - HMPREF1078_RS03045 0.44 +0.5 718,701 + HMPREF1078_RS03045 0.46 -1.0 718,726 + HMPREF1078_RS03045 0.48 +2.2 718,727 - HMPREF1078_RS03045 0.48 +1.8 718,735 + HMPREF1078_RS03045 0.48 -0.3 718,736 - HMPREF1078_RS03045 0.48 -1.0 718,741 + HMPREF1078_RS03045 0.48 +0.2 718,741 + HMPREF1078_RS03045 0.48 +0.2 718,760 + HMPREF1078_RS03045 0.49 +1.4 718,760 + HMPREF1078_RS03045 0.49 -0.2 718,761 - HMPREF1078_RS03045 0.49 -0.2 718,761 - HMPREF1078_RS03045 0.49 -1.0 718,804 - HMPREF1078_RS03045 0.52 +3.4 718,827 - HMPREF1078_RS03045 0.53 +0.9 718,867 + HMPREF1078_RS03045 0.55 -1.6 718,887 + HMPREF1078_RS03045 0.56 -1.3 718,888 - HMPREF1078_RS03045 0.56 +1.8 718,969 + HMPREF1078_RS03045 0.60 +0.1 719,044 + HMPREF1078_RS03045 0.64 +4.1 719,058 - HMPREF1078_RS03045 0.65 -2.0 719,114 + HMPREF1078_RS03045 0.68 +0.6 719,115 - HMPREF1078_RS03045 0.68 +0.2 719,119 + HMPREF1078_RS03045 0.68 -1.0 719,119 + HMPREF1078_RS03045 0.68 -0.5 719,120 - HMPREF1078_RS03045 0.68 +1.6 719,164 - HMPREF1078_RS03045 0.70 +1.3 719,188 + HMPREF1078_RS03045 0.72 +0.6 719,188 + HMPREF1078_RS03045 0.72 +4.1 719,189 - HMPREF1078_RS03045 0.72 +0.8 719,193 - HMPREF1078_RS03045 0.72 +4.8 719,246 - HMPREF1078_RS03045 0.75 -2.2 719,336 - HMPREF1078_RS03045 0.79 +0.1 719,388 - HMPREF1078_RS03045 0.82 +1.3 719,492 + HMPREF1078_RS03045 0.87 -0.2 719,497 + HMPREF1078_RS03045 0.88 +0.2 719,498 - HMPREF1078_RS03045 0.88 +1.8 719,498 - HMPREF1078_RS03045 0.88 -1.2 719,498 - HMPREF1078_RS03045 0.88 +0.2 719,569 + +0.8 719,569 + -0.4 719,569 + +0.8 719,570 - +0.2 719,570 - +1.2 719,606 + -0.3 719,666 + -0.2 719,711 + -0.0 719,741 - -1.5 719,833 - -0.8 719,837 + -1.0 719,838 - -0.2 719,842 - -1.3 719,919 + +0.8 719,935 - +1.8 719,957 + +1.8 719,987 + +0.8 719,987 + -1.5 719,987 + -0.5 720,000 - -0.5 720,007 - -1.3 720,009 - -0.8 720,009 - +0.7 720,021 + -0.5 720,022 - -1.5 720,053 + +1.8 720,148 + +0.5 720,157 + +0.2 720,157 + -0.2 720,158 - -0.5 720,161 + -0.8 720,161 + +2.8 720,162 - -0.3 720,177 - -0.8 720,181 + -0.0 720,182 - +1.8 720,207 - +1.4 720,230 + -0.8 720,249 + +0.4 720,320 + -0.3 720,321 - +3.8 720,321 - +1.1 720,321 - +1.8 720,324 + +0.0 720,325 - +0.0 720,528 - -1.0 720,555 + +0.4 720,650 - -1.8 720,653 + -1.8 720,654 - -2.3 720,672 - -1.0 720,708 + -0.4 720,708 + -1.3
Or see this region's nucleotide sequence