Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02695

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02685 and HMPREF1078_RS02690 overlap by 4 nucleotidesHMPREF1078_RS02690 and HMPREF1078_RS02695 are separated by 73 nucleotidesHMPREF1078_RS02695 and HMPREF1078_RS02700 are separated by 35 nucleotidesHMPREF1078_RS02700 and HMPREF1078_RS02705 are separated by 92 nucleotides HMPREF1078_RS02685: HMPREF1078_RS02685 - hypothetical protein, at 665,900 to 666,118 _RS02685 HMPREF1078_RS02690: HMPREF1078_RS02690 - hypothetical protein, at 666,115 to 666,825 _RS02690 HMPREF1078_RS02695: HMPREF1078_RS02695 - polysaccharide biosynthesis tyrosine autokinase, at 666,899 to 669,295 _RS02695 HMPREF1078_RS02700: HMPREF1078_RS02700 - polysaccharide biosynthesis/export family protein, at 669,331 to 670,125 _RS02700 HMPREF1078_RS02705: HMPREF1078_RS02705 - UpxY family transcription antiterminator, at 670,218 to 670,778 _RS02705 Position (kb) 666 667 668 669 670Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 665.954 kb on + strand, within HMPREF1078_RS02685at 665.954 kb on + strand, within HMPREF1078_RS02685at 665.954 kb on + strand, within HMPREF1078_RS02685at 665.955 kb on - strand, within HMPREF1078_RS02685at 666.024 kb on + strand, within HMPREF1078_RS02685at 666.053 kb on + strand, within HMPREF1078_RS02685at 666.136 kb on + strandat 666.136 kb on + strandat 666.194 kb on - strand, within HMPREF1078_RS02690at 666.262 kb on + strand, within HMPREF1078_RS02690at 666.339 kb on - strand, within HMPREF1078_RS02690at 666.356 kb on + strand, within HMPREF1078_RS02690at 666.356 kb on + strand, within HMPREF1078_RS02690at 666.356 kb on + strand, within HMPREF1078_RS02690at 666.357 kb on - strand, within HMPREF1078_RS02690at 666.357 kb on - strand, within HMPREF1078_RS02690at 666.357 kb on - strand, within HMPREF1078_RS02690at 666.393 kb on - strand, within HMPREF1078_RS02690at 666.393 kb on - strand, within HMPREF1078_RS02690at 666.487 kb on + strand, within HMPREF1078_RS02690at 666.543 kb on - strand, within HMPREF1078_RS02690at 666.577 kb on - strand, within HMPREF1078_RS02690at 666.690 kb on + strand, within HMPREF1078_RS02690at 666.691 kb on - strand, within HMPREF1078_RS02690at 666.694 kb on + strand, within HMPREF1078_RS02690at 666.810 kb on + strandat 666.828 kb on + strandat 666.901 kb on - strandat 666.933 kb on + strandat 666.933 kb on + strandat 666.934 kb on - strandat 666.960 kb on + strandat 666.960 kb on + strandat 666.961 kb on - strandat 666.961 kb on - strandat 666.964 kb on + strandat 666.965 kb on - strandat 667.049 kb on + strandat 667.066 kb on + strandat 667.066 kb on + strandat 667.171 kb on + strand, within HMPREF1078_RS02695at 667.172 kb on - strand, within HMPREF1078_RS02695at 667.172 kb on - strand, within HMPREF1078_RS02695at 667.172 kb on - strand, within HMPREF1078_RS02695at 667.172 kb on - strand, within HMPREF1078_RS02695at 667.173 kb on + strand, within HMPREF1078_RS02695at 667.179 kb on + strand, within HMPREF1078_RS02695at 667.255 kb on + strand, within HMPREF1078_RS02695at 667.271 kb on - strand, within HMPREF1078_RS02695at 667.339 kb on - strand, within HMPREF1078_RS02695at 667.347 kb on - strand, within HMPREF1078_RS02695at 667.372 kb on - strand, within HMPREF1078_RS02695at 667.864 kb on + strand, within HMPREF1078_RS02695at 667.864 kb on + strand, within HMPREF1078_RS02695at 667.864 kb on + strand, within HMPREF1078_RS02695at 667.864 kb on + strand, within HMPREF1078_RS02695at 667.865 kb on - strand, within HMPREF1078_RS02695at 667.865 kb on - strand, within HMPREF1078_RS02695at 667.921 kb on - strand, within HMPREF1078_RS02695at 667.926 kb on + strand, within HMPREF1078_RS02695at 667.927 kb on - strand, within HMPREF1078_RS02695at 667.927 kb on - strand, within HMPREF1078_RS02695at 667.971 kb on + strand, within HMPREF1078_RS02695at 668.113 kb on + strand, within HMPREF1078_RS02695at 668.167 kb on + strand, within HMPREF1078_RS02695at 668.188 kb on + strand, within HMPREF1078_RS02695at 668.286 kb on + strand, within HMPREF1078_RS02695at 668.356 kb on - strand, within HMPREF1078_RS02695at 668.356 kb on - strand, within HMPREF1078_RS02695at 668.423 kb on + strand, within HMPREF1078_RS02695at 668.423 kb on + strand, within HMPREF1078_RS02695at 668.581 kb on + strand, within HMPREF1078_RS02695at 668.593 kb on + strand, within HMPREF1078_RS02695at 668.665 kb on + strand, within HMPREF1078_RS02695at 668.666 kb on - strand, within HMPREF1078_RS02695at 668.666 kb on - strand, within HMPREF1078_RS02695at 668.741 kb on + strand, within HMPREF1078_RS02695at 668.850 kb on - strand, within HMPREF1078_RS02695at 668.855 kb on - strand, within HMPREF1078_RS02695at 668.914 kb on - strand, within HMPREF1078_RS02695at 668.949 kb on + strand, within HMPREF1078_RS02695at 668.949 kb on + strand, within HMPREF1078_RS02695at 668.950 kb on - strand, within HMPREF1078_RS02695at 668.950 kb on - strand, within HMPREF1078_RS02695at 668.950 kb on - strand, within HMPREF1078_RS02695at 669.050 kb on - strand, within HMPREF1078_RS02695at 669.159 kb on + strandat 669.159 kb on + strandat 669.160 kb on - strandat 669.182 kb on + strandat 669.242 kb on + strandat 669.248 kb on + strandat 669.248 kb on + strandat 669.296 kb on - strandat 669.296 kb on - strandat 669.299 kb on + strandat 669.300 kb on + strandat 669.332 kb on + strandat 669.333 kb on - strandat 669.344 kb on - strandat 669.344 kb on - strandat 669.495 kb on + strand, within HMPREF1078_RS02700at 669.511 kb on - strand, within HMPREF1078_RS02700at 669.568 kb on - strand, within HMPREF1078_RS02700at 669.643 kb on + strand, within HMPREF1078_RS02700at 669.651 kb on - strand, within HMPREF1078_RS02700at 669.651 kb on - strand, within HMPREF1078_RS02700at 669.676 kb on + strand, within HMPREF1078_RS02700at 669.706 kb on + strand, within HMPREF1078_RS02700at 669.715 kb on + strand, within HMPREF1078_RS02700at 669.867 kb on + strand, within HMPREF1078_RS02700at 669.868 kb on - strand, within HMPREF1078_RS02700at 669.869 kb on + strand, within HMPREF1078_RS02700at 669.876 kb on + strand, within HMPREF1078_RS02700at 669.958 kb on + strand, within HMPREF1078_RS02700at 670.080 kb on + strandat 670.081 kb on - strandat 670.125 kb on + strandat 670.126 kb on - strandat 670.129 kb on + strandat 670.129 kb on + strandat 670.129 kb on + strandat 670.129 kb on + strandat 670.129 kb on + strandat 670.130 kb on - strandat 670.130 kb on - strandat 670.131 kb on + strandat 670.131 kb on + strandat 670.131 kb on + strandat 670.132 kb on - strandat 670.144 kb on + strandat 670.145 kb on - strandat 670.149 kb on + strandat 670.156 kb on - strandat 670.281 kb on + strand, within HMPREF1078_RS02705

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
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665,954 + HMPREF1078_RS02685 0.25 -0.5
665,954 + HMPREF1078_RS02685 0.25 +0.8
665,954 + HMPREF1078_RS02685 0.25 -2.0
665,955 - HMPREF1078_RS02685 0.25 +1.5
666,024 + HMPREF1078_RS02685 0.57 -0.5
666,053 + HMPREF1078_RS02685 0.70 +0.8
666,136 + +0.1
666,136 + -0.8
666,194 - HMPREF1078_RS02690 0.11 -1.1
666,262 + HMPREF1078_RS02690 0.21 +1.6
666,339 - HMPREF1078_RS02690 0.32 -0.5
666,356 + HMPREF1078_RS02690 0.34 -0.2
666,356 + HMPREF1078_RS02690 0.34 -0.2
666,356 + HMPREF1078_RS02690 0.34 -1.0
666,357 - HMPREF1078_RS02690 0.34 -1.5
666,357 - HMPREF1078_RS02690 0.34 -2.6
666,357 - HMPREF1078_RS02690 0.34 +1.8
666,393 - HMPREF1078_RS02690 0.39 -0.2
666,393 - HMPREF1078_RS02690 0.39 -0.2
666,487 + HMPREF1078_RS02690 0.52 +0.2
666,543 - HMPREF1078_RS02690 0.60 +0.0
666,577 - HMPREF1078_RS02690 0.65 +0.2
666,690 + HMPREF1078_RS02690 0.81 +0.5
666,691 - HMPREF1078_RS02690 0.81 -1.9
666,694 + HMPREF1078_RS02690 0.81 -1.8
666,810 + -1.0
666,828 + +0.8
666,901 - -0.5
666,933 + +1.0
666,933 + +1.1
666,934 - -2.0
666,960 + -0.2
666,960 + -0.5
666,961 - -1.1
666,961 - +0.7
666,964 + +0.8
666,965 - -1.0
667,049 + +0.8
667,066 + -2.8
667,066 + +1.5
667,171 + HMPREF1078_RS02695 0.11 -1.1
667,172 - HMPREF1078_RS02695 0.11 -1.3
667,172 - HMPREF1078_RS02695 0.11 +0.1
667,172 - HMPREF1078_RS02695 0.11 -1.5
667,172 - HMPREF1078_RS02695 0.11 -1.2
667,173 + HMPREF1078_RS02695 0.11 +0.8
667,179 + HMPREF1078_RS02695 0.12 -0.1
667,255 + HMPREF1078_RS02695 0.15 -1.6
667,271 - HMPREF1078_RS02695 0.16 -0.5
667,339 - HMPREF1078_RS02695 0.18 +1.7
667,347 - HMPREF1078_RS02695 0.19 +1.1
667,372 - HMPREF1078_RS02695 0.20 +1.8
667,864 + HMPREF1078_RS02695 0.40 -0.7
667,864 + HMPREF1078_RS02695 0.40 +1.5
667,864 + HMPREF1078_RS02695 0.40 +1.0
667,864 + HMPREF1078_RS02695 0.40 +1.2
667,865 - HMPREF1078_RS02695 0.40 -1.0
667,865 - HMPREF1078_RS02695 0.40 +0.7
667,921 - HMPREF1078_RS02695 0.43 -0.2
667,926 + HMPREF1078_RS02695 0.43 -2.4
667,927 - HMPREF1078_RS02695 0.43 +0.2
667,927 - HMPREF1078_RS02695 0.43 -2.2
667,971 + HMPREF1078_RS02695 0.45 -0.2
668,113 + HMPREF1078_RS02695 0.51 -1.4
668,167 + HMPREF1078_RS02695 0.53 -0.8
668,188 + HMPREF1078_RS02695 0.54 +1.2
668,286 + HMPREF1078_RS02695 0.58 -0.5
668,356 - HMPREF1078_RS02695 0.61 +1.8
668,356 - HMPREF1078_RS02695 0.61 +0.3
668,423 + HMPREF1078_RS02695 0.64 -0.8
668,423 + HMPREF1078_RS02695 0.64 -0.5
668,581 + HMPREF1078_RS02695 0.70 -0.8
668,593 + HMPREF1078_RS02695 0.71 -2.1
668,665 + HMPREF1078_RS02695 0.74 +0.2
668,666 - HMPREF1078_RS02695 0.74 -0.8
668,666 - HMPREF1078_RS02695 0.74 -0.8
668,741 + HMPREF1078_RS02695 0.77 +1.6
668,850 - HMPREF1078_RS02695 0.81 +1.8
668,855 - HMPREF1078_RS02695 0.82 -2.4
668,914 - HMPREF1078_RS02695 0.84 -1.9
668,949 + HMPREF1078_RS02695 0.86 +0.0
668,949 + HMPREF1078_RS02695 0.86 +0.8
668,950 - HMPREF1078_RS02695 0.86 -0.2
668,950 - HMPREF1078_RS02695 0.86 -2.9
668,950 - HMPREF1078_RS02695 0.86 +0.4
669,050 - HMPREF1078_RS02695 0.90 +0.2
669,159 + -2.0
669,159 + -1.0
669,160 - -0.2
669,182 + +0.2
669,242 + +0.8
669,248 + -0.4
669,248 + +0.2
669,296 - -5.4
669,296 - +0.8
669,299 + +0.2
669,300 + +1.4
669,332 + -0.8
669,333 - +1.8
669,344 - -1.9
669,344 - -1.3
669,495 + HMPREF1078_RS02700 0.21 +1.8
669,511 - HMPREF1078_RS02700 0.23 +0.6
669,568 - HMPREF1078_RS02700 0.30 -1.1
669,643 + HMPREF1078_RS02700 0.39 -1.0
669,651 - HMPREF1078_RS02700 0.40 +0.8
669,651 - HMPREF1078_RS02700 0.40 -0.6
669,676 + HMPREF1078_RS02700 0.43 -1.0
669,706 + HMPREF1078_RS02700 0.47 +0.7
669,715 + HMPREF1078_RS02700 0.48 -0.8
669,867 + HMPREF1078_RS02700 0.67 -0.2
669,868 - HMPREF1078_RS02700 0.68 -2.1
669,869 + HMPREF1078_RS02700 0.68 -0.5
669,876 + HMPREF1078_RS02700 0.69 +1.8
669,958 + HMPREF1078_RS02700 0.79 -0.9
670,080 + +0.9
670,081 - +0.6
670,125 + +0.2
670,126 - +2.6
670,129 + -1.2
670,129 + +0.8
670,129 + -1.5
670,129 + -1.6
670,129 + -1.0
670,130 - +1.8
670,130 - -0.5
670,131 + +2.5
670,131 + +1.5
670,131 + -1.2
670,132 - +2.2
670,144 + +1.1
670,145 - -0.2
670,149 + +0.6
670,156 - -1.4
670,281 + HMPREF1078_RS02705 0.11 -0.3

Or see this region's nucleotide sequence