Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19095 and HMPREF1078_RS02680 are separated by 735 nucleotides HMPREF1078_RS02680 and HMPREF1078_RS02685 are separated by 25 nucleotides HMPREF1078_RS02685 and HMPREF1078_RS02690 overlap by 4 nucleotides
HMPREF1078_RS19095: HMPREF1078_RS19095 - sugar transferase, at 664,390 to 664,989
_RS19095
HMPREF1078_RS02680: HMPREF1078_RS02680 - hypothetical protein, at 665,725 to 665,874
_RS02680
HMPREF1078_RS02685: HMPREF1078_RS02685 - hypothetical protein, at 665,900 to 666,118
_RS02685
HMPREF1078_RS02690: HMPREF1078_RS02690 - hypothetical protein, at 666,115 to 666,825
_RS02690
Position (kb) 665
666 Strain fitness (log2 ratio) -2
-1
0
1
2 at 664.725 kb on + strand, within HMPREF1078_RS19095 at 664.811 kb on + strand, within HMPREF1078_RS19095 at 664.818 kb on - strand, within HMPREF1078_RS19095 at 664.818 kb on - strand, within HMPREF1078_RS19095 at 664.909 kb on + strand, within HMPREF1078_RS19095 at 664.947 kb on + strand at 664.966 kb on + strand at 664.967 kb on - strand at 665.021 kb on + strand at 665.047 kb on + strand at 665.048 kb on - strand at 665.106 kb on + strand at 665.107 kb on - strand at 665.140 kb on - strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.241 kb on - strand at 665.285 kb on - strand at 665.306 kb on + strand at 665.307 kb on - strand at 665.331 kb on + strand at 665.351 kb on + strand at 665.352 kb on - strand at 665.401 kb on - strand at 665.401 kb on - strand at 665.401 kb on - strand at 665.406 kb on + strand at 665.406 kb on + strand at 665.408 kb on + strand at 665.427 kb on + strand at 665.496 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.503 kb on + strand at 665.504 kb on - strand at 665.504 kb on - strand at 665.504 kb on - strand at 665.638 kb on + strand at 665.639 kb on - strand at 665.674 kb on + strand at 665.708 kb on + strand at 665.714 kb on - strand at 665.779 kb on + strand, within HMPREF1078_RS02680 at 665.842 kb on + strand, within HMPREF1078_RS02680 at 665.844 kb on - strand, within HMPREF1078_RS02680 at 665.880 kb on + strand at 665.880 kb on + strand at 665.882 kb on + strand at 665.883 kb on - strand at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.954 kb on + strand, within HMPREF1078_RS02685 at 665.955 kb on - strand, within HMPREF1078_RS02685 at 666.024 kb on + strand, within HMPREF1078_RS02685 at 666.053 kb on + strand, within HMPREF1078_RS02685 at 666.136 kb on + strand at 666.136 kb on + strand at 666.194 kb on - strand, within HMPREF1078_RS02690 at 666.262 kb on + strand, within HMPREF1078_RS02690 at 666.339 kb on - strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.356 kb on + strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.357 kb on - strand, within HMPREF1078_RS02690 at 666.393 kb on - strand, within HMPREF1078_RS02690 at 666.393 kb on - strand, within HMPREF1078_RS02690 at 666.487 kb on + strand, within HMPREF1078_RS02690 at 666.543 kb on - strand, within HMPREF1078_RS02690 at 666.577 kb on - strand, within HMPREF1078_RS02690 at 666.690 kb on + strand, within HMPREF1078_RS02690 at 666.691 kb on - strand, within HMPREF1078_RS02690 at 666.694 kb on + strand, within HMPREF1078_RS02690 at 666.810 kb on + strand at 666.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 664,725 + HMPREF1078_RS19095 0.56 -0.2 664,811 + HMPREF1078_RS19095 0.70 +0.8 664,818 - HMPREF1078_RS19095 0.71 -1.7 664,818 - HMPREF1078_RS19095 0.71 +2.1 664,909 + HMPREF1078_RS19095 0.86 -1.5 664,947 + +0.6 664,966 + +0.0 664,967 - -2.2 665,021 + +1.8 665,047 + +1.1 665,048 - -0.2 665,106 + -0.8 665,107 - -1.2 665,140 - +0.3 665,141 + -2.0 665,141 + +0.2 665,141 + -0.4 665,141 + -1.3 665,241 - -0.2 665,285 - -1.7 665,306 + +0.8 665,307 - +0.5 665,331 + +1.3 665,351 + +0.4 665,352 - -1.0 665,401 - -1.8 665,401 - -0.2 665,401 - -2.0 665,406 + -0.0 665,406 + +0.8 665,408 + -1.8 665,427 + +1.8 665,496 + -0.5 665,503 + -0.8 665,503 + +1.1 665,503 + -0.8 665,503 + -1.8 665,504 - -2.5 665,504 - -1.8 665,504 - -1.8 665,638 + -0.5 665,639 - -1.7 665,674 + -0.8 665,708 + -2.1 665,714 - -2.0 665,779 + HMPREF1078_RS02680 0.36 +0.2 665,842 + HMPREF1078_RS02680 0.78 -0.2 665,844 - HMPREF1078_RS02680 0.79 -0.7 665,880 + +0.7 665,880 + -1.5 665,882 + -0.5 665,883 - +2.5 665,954 + HMPREF1078_RS02685 0.25 -0.5 665,954 + HMPREF1078_RS02685 0.25 +0.8 665,954 + HMPREF1078_RS02685 0.25 -2.0 665,955 - HMPREF1078_RS02685 0.25 +1.5 666,024 + HMPREF1078_RS02685 0.57 -0.5 666,053 + HMPREF1078_RS02685 0.70 +0.8 666,136 + +0.1 666,136 + -0.8 666,194 - HMPREF1078_RS02690 0.11 -1.1 666,262 + HMPREF1078_RS02690 0.21 +1.6 666,339 - HMPREF1078_RS02690 0.32 -0.5 666,356 + HMPREF1078_RS02690 0.34 -0.2 666,356 + HMPREF1078_RS02690 0.34 -0.2 666,356 + HMPREF1078_RS02690 0.34 -1.0 666,357 - HMPREF1078_RS02690 0.34 -1.5 666,357 - HMPREF1078_RS02690 0.34 -2.6 666,357 - HMPREF1078_RS02690 0.34 +1.8 666,393 - HMPREF1078_RS02690 0.39 -0.2 666,393 - HMPREF1078_RS02690 0.39 -0.2 666,487 + HMPREF1078_RS02690 0.52 +0.2 666,543 - HMPREF1078_RS02690 0.60 +0.0 666,577 - HMPREF1078_RS02690 0.65 +0.2 666,690 + HMPREF1078_RS02690 0.81 +0.5 666,691 - HMPREF1078_RS02690 0.81 -1.9 666,694 + HMPREF1078_RS02690 0.81 -1.8 666,810 + -1.0 666,828 + +0.8
Or see this region's nucleotide sequence