Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00975 and HMPREF1078_RS00980 are separated by 41 nucleotides
HMPREF1078_RS00975: HMPREF1078_RS00975 - DPP IV N-terminal domain-containing protein, at 238,203 to 240,641
_RS00975
HMPREF1078_RS00980: HMPREF1078_RS00980 - HU family DNA-binding protein, at 240,683 to 240,967
_RS00980
Position (kb) 240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 239.708 kb on + strand, within HMPREF1078_RS00975 at 239.757 kb on - strand, within HMPREF1078_RS00975 at 239.757 kb on - strand, within HMPREF1078_RS00975 at 239.757 kb on - strand, within HMPREF1078_RS00975 at 239.872 kb on - strand, within HMPREF1078_RS00975 at 239.884 kb on - strand, within HMPREF1078_RS00975 at 239.884 kb on - strand, within HMPREF1078_RS00975 at 239.895 kb on - strand, within HMPREF1078_RS00975 at 239.937 kb on + strand, within HMPREF1078_RS00975 at 239.981 kb on + strand, within HMPREF1078_RS00975 at 240.021 kb on - strand, within HMPREF1078_RS00975 at 240.077 kb on + strand, within HMPREF1078_RS00975 at 240.077 kb on + strand, within HMPREF1078_RS00975 at 240.077 kb on + strand, within HMPREF1078_RS00975 at 240.078 kb on - strand, within HMPREF1078_RS00975 at 240.078 kb on - strand, within HMPREF1078_RS00975 at 240.153 kb on + strand, within HMPREF1078_RS00975 at 240.215 kb on + strand, within HMPREF1078_RS00975 at 240.224 kb on + strand, within HMPREF1078_RS00975 at 240.224 kb on + strand, within HMPREF1078_RS00975 at 240.225 kb on - strand, within HMPREF1078_RS00975 at 240.225 kb on - strand, within HMPREF1078_RS00975 at 240.226 kb on + strand, within HMPREF1078_RS00975 at 240.226 kb on + strand, within HMPREF1078_RS00975 at 240.281 kb on + strand, within HMPREF1078_RS00975 at 240.288 kb on - strand, within HMPREF1078_RS00975 at 240.291 kb on + strand, within HMPREF1078_RS00975 at 240.385 kb on + strand, within HMPREF1078_RS00975 at 240.424 kb on + strand at 240.425 kb on - strand at 240.461 kb on + strand at 240.466 kb on + strand at 240.467 kb on - strand at 240.573 kb on - strand at 240.573 kb on - strand at 240.598 kb on + strand at 240.599 kb on - strand at 240.599 kb on - strand at 240.685 kb on - strand at 240.714 kb on - strand, within HMPREF1078_RS00980 at 240.758 kb on - strand, within HMPREF1078_RS00980 at 240.772 kb on + strand, within HMPREF1078_RS00980 at 240.772 kb on + strand, within HMPREF1078_RS00980 at 240.772 kb on + strand, within HMPREF1078_RS00980 at 240.773 kb on - strand, within HMPREF1078_RS00980 at 240.781 kb on + strand, within HMPREF1078_RS00980 at 240.781 kb on + strand, within HMPREF1078_RS00980 at 240.781 kb on + strand, within HMPREF1078_RS00980 at 240.782 kb on - strand, within HMPREF1078_RS00980 at 240.828 kb on + strand, within HMPREF1078_RS00980 at 240.829 kb on - strand, within HMPREF1078_RS00980 at 240.872 kb on + strand, within HMPREF1078_RS00980 at 240.873 kb on - strand, within HMPREF1078_RS00980 at 240.873 kb on - strand, within HMPREF1078_RS00980 at 240.873 kb on - strand, within HMPREF1078_RS00980 at 240.878 kb on + strand, within HMPREF1078_RS00980 at 240.882 kb on + strand, within HMPREF1078_RS00980 at 240.882 kb on + strand, within HMPREF1078_RS00980 at 240.917 kb on - strand, within HMPREF1078_RS00980 at 240.917 kb on - strand, within HMPREF1078_RS00980 at 240.917 kb on - strand, within HMPREF1078_RS00980 at 240.947 kb on + strand at 240.947 kb on + strand at 240.967 kb on + strand at 240.967 kb on + strand at 240.968 kb on - strand at 240.968 kb on - strand at 240.970 kb on - strand at 240.970 kb on - strand at 240.972 kb on + strand at 240.972 kb on - strand at 240.973 kb on - strand at 240.973 kb on - strand at 240.981 kb on + strand at 240.981 kb on + strand at 240.988 kb on - strand at 241.029 kb on - strand at 241.060 kb on - strand at 241.062 kb on + strand at 241.063 kb on - strand at 241.080 kb on + strand at 241.080 kb on + strand at 241.084 kb on + strand at 241.084 kb on + strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.085 kb on - strand at 241.086 kb on + strand at 241.087 kb on - strand at 241.092 kb on + strand at 241.092 kb on + strand at 241.093 kb on - strand at 241.111 kb on - strand at 241.115 kb on + strand at 241.122 kb on + strand at 241.142 kb on + strand at 241.143 kb on - strand at 241.179 kb on - strand at 241.182 kb on + strand at 241.182 kb on + strand at 241.183 kb on - strand at 241.191 kb on + strand at 241.192 kb on - strand at 241.223 kb on - strand at 241.227 kb on + strand at 241.228 kb on - strand at 241.230 kb on + strand at 241.230 kb on + strand at 241.230 kb on + strand at 241.231 kb on - strand at 241.231 kb on - strand at 241.237 kb on + strand at 241.238 kb on - strand at 241.282 kb on + strand at 241.288 kb on - strand at 241.322 kb on + strand at 241.335 kb on + strand at 241.355 kb on - strand at 241.355 kb on - strand at 241.357 kb on + strand at 241.358 kb on - strand at 241.358 kb on - strand at 241.358 kb on - strand at 241.359 kb on + strand at 241.359 kb on + strand at 241.359 kb on + strand at 241.359 kb on + strand at 241.359 kb on + strand at 241.360 kb on - strand at 241.360 kb on - strand at 241.360 kb on - strand at 241.360 kb on - strand at 241.360 kb on - strand at 241.381 kb on + strand at 241.382 kb on - strand at 241.382 kb on - strand at 241.386 kb on + strand at 241.386 kb on + strand at 241.386 kb on + strand at 241.386 kb on + strand at 241.386 kb on + strand at 241.387 kb on - strand at 241.387 kb on - strand at 241.387 kb on - strand at 241.387 kb on - strand at 241.387 kb on - strand at 241.388 kb on + strand at 241.389 kb on - strand at 241.389 kb on - strand at 241.390 kb on + strand at 241.390 kb on + strand at 241.390 kb on + strand at 241.390 kb on + strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.391 kb on - strand at 241.400 kb on - strand at 241.400 kb on - strand at 241.400 kb on - strand at 241.401 kb on + strand at 241.401 kb on + strand at 241.402 kb on - strand at 241.402 kb on - strand at 241.402 kb on - strand at 241.403 kb on + strand at 241.404 kb on - strand at 241.428 kb on + strand at 241.429 kb on - strand at 241.440 kb on - strand at 241.468 kb on + strand at 241.468 kb on + strand at 241.469 kb on - strand at 241.491 kb on + strand at 241.494 kb on - strand at 241.495 kb on + strand at 241.495 kb on + strand at 241.495 kb on + strand at 241.537 kb on + strand at 241.560 kb on + strand at 241.561 kb on - strand at 241.561 kb on - strand at 241.561 kb on - strand at 241.562 kb on + strand at 241.563 kb on - strand at 241.599 kb on - strand at 241.659 kb on + strand at 241.660 kb on - strand at 241.665 kb on + strand at 241.668 kb on + strand at 241.669 kb on - strand at 241.711 kb on + strand at 241.712 kb on - strand at 241.770 kb on + strand at 241.846 kb on - strand at 241.850 kb on + strand at 241.851 kb on - strand at 241.882 kb on - strand at 241.958 kb on - strand at 241.960 kb on + strand at 241.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 239,708 + HMPREF1078_RS00975 0.62 +0.3 239,757 - HMPREF1078_RS00975 0.64 -0.0 239,757 - HMPREF1078_RS00975 0.64 +0.9 239,757 - HMPREF1078_RS00975 0.64 -1.3 239,872 - HMPREF1078_RS00975 0.68 +0.9 239,884 - HMPREF1078_RS00975 0.69 +0.6 239,884 - HMPREF1078_RS00975 0.69 -1.0 239,895 - HMPREF1078_RS00975 0.69 -0.8 239,937 + HMPREF1078_RS00975 0.71 -2.2 239,981 + HMPREF1078_RS00975 0.73 -0.3 240,021 - HMPREF1078_RS00975 0.75 -2.9 240,077 + HMPREF1078_RS00975 0.77 -0.1 240,077 + HMPREF1078_RS00975 0.77 -2.1 240,077 + HMPREF1078_RS00975 0.77 +1.3 240,078 - HMPREF1078_RS00975 0.77 -1.9 240,078 - HMPREF1078_RS00975 0.77 +0.3 240,153 + HMPREF1078_RS00975 0.80 +0.3 240,215 + HMPREF1078_RS00975 0.82 +0.9 240,224 + HMPREF1078_RS00975 0.83 -0.2 240,224 + HMPREF1078_RS00975 0.83 -1.1 240,225 - HMPREF1078_RS00975 0.83 +0.3 240,225 - HMPREF1078_RS00975 0.83 -1.5 240,226 + HMPREF1078_RS00975 0.83 -1.6 240,226 + HMPREF1078_RS00975 0.83 -1.1 240,281 + HMPREF1078_RS00975 0.85 -0.1 240,288 - HMPREF1078_RS00975 0.85 -0.7 240,291 + HMPREF1078_RS00975 0.86 -0.3 240,385 + HMPREF1078_RS00975 0.89 -1.1 240,424 + -0.5 240,425 - +1.5 240,461 + -0.3 240,466 + -0.5 240,467 - +0.3 240,573 - +1.1 240,573 - -1.5 240,598 + +0.5 240,599 - -1.8 240,599 - +0.9 240,685 - +0.3 240,714 - HMPREF1078_RS00980 0.11 -0.9 240,758 - HMPREF1078_RS00980 0.26 +0.1 240,772 + HMPREF1078_RS00980 0.31 +0.9 240,772 + HMPREF1078_RS00980 0.31 -0.3 240,772 + HMPREF1078_RS00980 0.31 -0.8 240,773 - HMPREF1078_RS00980 0.32 +0.4 240,781 + HMPREF1078_RS00980 0.34 -1.4 240,781 + HMPREF1078_RS00980 0.34 -2.4 240,781 + HMPREF1078_RS00980 0.34 -1.3 240,782 - HMPREF1078_RS00980 0.35 -0.7 240,828 + HMPREF1078_RS00980 0.51 -1.5 240,829 - HMPREF1078_RS00980 0.51 -0.0 240,872 + HMPREF1078_RS00980 0.66 +0.3 240,873 - HMPREF1078_RS00980 0.67 -1.3 240,873 - HMPREF1078_RS00980 0.67 -0.9 240,873 - HMPREF1078_RS00980 0.67 -0.0 240,878 + HMPREF1078_RS00980 0.68 -0.7 240,882 + HMPREF1078_RS00980 0.70 -2.5 240,882 + HMPREF1078_RS00980 0.70 -0.1 240,917 - HMPREF1078_RS00980 0.82 +2.9 240,917 - HMPREF1078_RS00980 0.82 -0.9 240,917 - HMPREF1078_RS00980 0.82 +1.5 240,947 + -0.5 240,947 + +1.9 240,967 + +0.9 240,967 + -2.5 240,968 - -2.1 240,968 - -1.5 240,970 - +1.2 240,970 - -0.5 240,972 + -1.8 240,972 - -0.6 240,973 - -1.3 240,973 - +1.5 240,981 + +0.3 240,981 + +1.0 240,988 - -1.1 241,029 - -0.5 241,060 - +0.3 241,062 + +0.0 241,063 - +0.9 241,080 + -2.5 241,080 + +0.5 241,084 + -0.8 241,084 + -1.7 241,085 - -1.6 241,085 - -0.8 241,085 - -0.7 241,085 - -0.0 241,085 - -2.9 241,085 - -1.5 241,085 - -1.3 241,086 + -0.6 241,087 - +0.9 241,092 + +0.4 241,092 + -0.5 241,093 - -1.1 241,111 - -1.3 241,115 + +1.9 241,122 + +0.1 241,142 + +0.3 241,143 - +1.4 241,179 - -0.6 241,182 + +0.9 241,182 + +0.3 241,183 - -0.3 241,191 + +0.1 241,192 - +0.3 241,223 - -1.6 241,227 + +1.9 241,228 - +1.1 241,230 + +0.3 241,230 + +0.1 241,230 + -2.4 241,231 - +0.2 241,231 - -1.1 241,237 + -0.8 241,238 - -0.5 241,282 + +0.5 241,288 - -2.8 241,322 + +0.3 241,335 + +1.9 241,355 - -1.3 241,355 - -0.5 241,357 + -2.7 241,358 - -1.3 241,358 - -2.7 241,358 - -3.0 241,359 + -0.1 241,359 + -2.4 241,359 + +1.9 241,359 + -3.2 241,359 + -1.1 241,360 - -0.7 241,360 - -2.0 241,360 - +1.7 241,360 - -3.1 241,360 - -1.7 241,381 + +0.8 241,382 - +3.5 241,382 - +0.9 241,386 + -0.1 241,386 + -0.9 241,386 + -0.7 241,386 + -0.9 241,386 + -1.6 241,387 - +0.4 241,387 - +1.1 241,387 - -0.6 241,387 - -0.6 241,387 - +1.6 241,388 + -0.5 241,389 - -0.3 241,389 - +0.4 241,390 + +0.7 241,390 + -0.9 241,390 + +1.9 241,390 + -1.8 241,391 - -0.1 241,391 - +0.9 241,391 - +0.1 241,391 - -0.9 241,391 - +0.9 241,391 - -1.6 241,391 - +3.9 241,391 - -2.1 241,400 - +0.5 241,400 - -0.5 241,400 - +0.9 241,401 + -1.0 241,401 + +0.3 241,402 - +0.6 241,402 - -0.1 241,402 - +1.1 241,403 + -0.7 241,404 - -1.1 241,428 + -2.7 241,429 - +0.3 241,440 - +0.3 241,468 + +1.9 241,468 + -1.7 241,469 - +0.1 241,491 + -0.5 241,494 - -0.9 241,495 + -0.5 241,495 + +0.3 241,495 + -0.1 241,537 + -0.1 241,560 + +0.1 241,561 - +1.9 241,561 - +2.2 241,561 - +0.3 241,562 + -0.7 241,563 - +0.7 241,599 - -1.0 241,659 + -0.5 241,660 - -0.5 241,665 + +1.9 241,668 + -0.1 241,669 - +0.2 241,711 + +0.3 241,712 - -0.5 241,770 + +0.3 241,846 - +0.9 241,850 + -1.9 241,851 - -0.1 241,882 - +0.3 241,958 - +0.1 241,960 + -1.7 241,960 + -2.5
Or see this region's nucleotide sequence