Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00930 and HMPREF1078_RS00935 overlap by 4 nucleotides HMPREF1078_RS00935 and HMPREF1078_RS00940 are separated by 768 nucleotides
HMPREF1078_RS00930: HMPREF1078_RS00930 - cobyric acid synthase, at 227,577 to 229,100
_RS00930
HMPREF1078_RS00935: HMPREF1078_RS00935 - GNAT family N-acetyltransferase, at 229,097 to 229,600
_RS00935
HMPREF1078_RS00940: HMPREF1078_RS00940 - hypothetical protein, at 230,369 to 230,959
_RS00940
Position (kb) 229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 228.143 kb on + strand, within HMPREF1078_RS00930 at 228.207 kb on - strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.242 kb on - strand, within HMPREF1078_RS00930 at 228.244 kb on + strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.293 kb on + strand, within HMPREF1078_RS00930 at 228.343 kb on + strand, within HMPREF1078_RS00930 at 228.347 kb on + strand, within HMPREF1078_RS00930 at 228.420 kb on + strand, within HMPREF1078_RS00930 at 228.500 kb on + strand, within HMPREF1078_RS00930 at 228.635 kb on + strand, within HMPREF1078_RS00930 at 228.677 kb on + strand, within HMPREF1078_RS00930 at 228.704 kb on + strand, within HMPREF1078_RS00930 at 228.707 kb on - strand, within HMPREF1078_RS00930 at 228.753 kb on + strand, within HMPREF1078_RS00930 at 228.753 kb on + strand, within HMPREF1078_RS00930 at 228.781 kb on + strand, within HMPREF1078_RS00930 at 228.840 kb on - strand, within HMPREF1078_RS00930 at 229.014 kb on + strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.015 kb on - strand at 229.017 kb on - strand at 229.017 kb on - strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.092 kb on + strand at 229.093 kb on - strand at 229.126 kb on - strand at 229.138 kb on - strand at 229.141 kb on - strand at 229.195 kb on + strand, within HMPREF1078_RS00935 at 229.197 kb on + strand, within HMPREF1078_RS00935 at 229.205 kb on + strand, within HMPREF1078_RS00935 at 229.226 kb on + strand, within HMPREF1078_RS00935 at 229.239 kb on - strand, within HMPREF1078_RS00935 at 229.272 kb on + strand, within HMPREF1078_RS00935 at 229.272 kb on + strand, within HMPREF1078_RS00935 at 229.319 kb on + strand, within HMPREF1078_RS00935 at 229.320 kb on - strand, within HMPREF1078_RS00935 at 229.335 kb on + strand, within HMPREF1078_RS00935 at 229.353 kb on + strand, within HMPREF1078_RS00935 at 229.368 kb on - strand, within HMPREF1078_RS00935 at 229.368 kb on - strand, within HMPREF1078_RS00935 at 229.387 kb on - strand, within HMPREF1078_RS00935 at 229.411 kb on - strand, within HMPREF1078_RS00935 at 229.471 kb on - strand, within HMPREF1078_RS00935 at 229.486 kb on + strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.489 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.601 kb on - strand at 229.602 kb on + strand at 229.715 kb on - strand at 229.752 kb on - strand at 229.773 kb on + strand at 229.964 kb on + strand at 230.017 kb on - strand at 230.126 kb on + strand at 230.129 kb on - strand at 230.133 kb on - strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.142 kb on - strand at 230.142 kb on - strand at 230.202 kb on + strand at 230.210 kb on - strand at 230.322 kb on + strand at 230.323 kb on - strand at 230.333 kb on + strand at 230.337 kb on + strand at 230.337 kb on + strand at 230.364 kb on + strand at 230.364 kb on + strand at 230.375 kb on - strand at 230.419 kb on - strand at 230.512 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 228,143 + HMPREF1078_RS00930 0.37 +0.9 228,207 - HMPREF1078_RS00930 0.41 -1.6 228,239 + HMPREF1078_RS00930 0.43 -1.8 228,239 + HMPREF1078_RS00930 0.43 +0.9 228,242 - HMPREF1078_RS00930 0.44 +0.9 228,244 + HMPREF1078_RS00930 0.44 +0.3 228,274 - HMPREF1078_RS00930 0.46 +3.5 228,274 - HMPREF1078_RS00930 0.46 -0.3 228,274 - HMPREF1078_RS00930 0.46 +0.9 228,293 + HMPREF1078_RS00930 0.47 +0.9 228,343 + HMPREF1078_RS00930 0.50 -0.5 228,347 + HMPREF1078_RS00930 0.51 +0.9 228,420 + HMPREF1078_RS00930 0.55 -0.7 228,500 + HMPREF1078_RS00930 0.61 +0.9 228,635 + HMPREF1078_RS00930 0.69 -0.7 228,677 + HMPREF1078_RS00930 0.72 +0.3 228,704 + HMPREF1078_RS00930 0.74 -1.3 228,707 - HMPREF1078_RS00930 0.74 +0.3 228,753 + HMPREF1078_RS00930 0.77 -0.9 228,753 + HMPREF1078_RS00930 0.77 +1.9 228,781 + HMPREF1078_RS00930 0.79 -0.9 228,840 - HMPREF1078_RS00930 0.83 -0.5 229,014 + -0.5 229,015 - -0.7 229,015 - +0.3 229,015 - +2.2 229,015 - -0.9 229,017 - -0.7 229,017 - +1.9 229,092 + -0.1 229,092 + +1.5 229,092 + +1.9 229,092 + -0.9 229,093 - +0.3 229,126 - -1.3 229,138 - +1.8 229,141 - +0.2 229,195 + HMPREF1078_RS00935 0.19 +0.3 229,197 + HMPREF1078_RS00935 0.20 -0.7 229,205 + HMPREF1078_RS00935 0.21 -0.1 229,226 + HMPREF1078_RS00935 0.26 +0.9 229,239 - HMPREF1078_RS00935 0.28 -0.9 229,272 + HMPREF1078_RS00935 0.35 -0.1 229,272 + HMPREF1078_RS00935 0.35 -0.7 229,319 + HMPREF1078_RS00935 0.44 +0.3 229,320 - HMPREF1078_RS00935 0.44 +0.1 229,335 + HMPREF1078_RS00935 0.47 +0.9 229,353 + HMPREF1078_RS00935 0.51 +1.9 229,368 - HMPREF1078_RS00935 0.54 -0.1 229,368 - HMPREF1078_RS00935 0.54 -0.2 229,387 - HMPREF1078_RS00935 0.58 +0.9 229,411 - HMPREF1078_RS00935 0.62 +0.5 229,471 - HMPREF1078_RS00935 0.74 -1.8 229,486 + HMPREF1078_RS00935 0.77 +0.7 229,487 - HMPREF1078_RS00935 0.77 -0.5 229,487 - HMPREF1078_RS00935 0.77 -0.4 229,489 - HMPREF1078_RS00935 0.78 -2.7 229,522 - HMPREF1078_RS00935 0.84 -0.9 229,522 - HMPREF1078_RS00935 0.84 +0.3 229,522 - HMPREF1078_RS00935 0.84 +0.5 229,601 - +1.5 229,602 + -0.7 229,715 - +2.3 229,752 - -2.2 229,773 + -0.7 229,964 + +1.9 230,017 - -0.8 230,126 + -3.0 230,129 - -2.6 230,133 - +0.6 230,141 + -0.5 230,141 + -1.7 230,141 + -0.6 230,141 + +2.0 230,142 - -1.1 230,142 - +1.9 230,202 + -0.2 230,210 - +0.5 230,322 + -0.1 230,323 - +0.1 230,333 + +1.9 230,337 + -0.0 230,337 + -0.8 230,364 + +0.3 230,364 + -1.6 230,375 - -0.7 230,419 - +0.0 230,512 + HMPREF1078_RS00940 0.24 -1.1 230,595 + HMPREF1078_RS00940 0.38 -1.8 230,595 + HMPREF1078_RS00940 0.38 -1.1
Or see this region's nucleotide sequence