Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13965 and HMPREF1078_RS13970 are separated by 44 nucleotides HMPREF1078_RS13970 and HMPREF1078_RS13975 are separated by 582 nucleotides
HMPREF1078_RS13965: HMPREF1078_RS13965 - AIR synthase-related protein, at 250,508 to 251,680
_RS13965
HMPREF1078_RS13970: HMPREF1078_RS13970 - glucosaminidase domain-containing protein, at 251,725 to 252,627
_RS13970
HMPREF1078_RS13975: HMPREF1078_RS13975 - cytidine deaminase, at 253,210 to 253,686
_RS13975
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.708 kb on - strand at 251.722 kb on + strand at 251.723 kb on - strand at 251.723 kb on - strand at 251.723 kb on - strand at 251.727 kb on - strand at 251.738 kb on - strand at 251.738 kb on - strand at 251.787 kb on + strand at 251.789 kb on + strand at 251.789 kb on + strand at 251.790 kb on - strand at 251.791 kb on + strand at 251.791 kb on + strand at 251.791 kb on + strand at 251.792 kb on - strand at 251.807 kb on - strand at 251.807 kb on - strand at 251.814 kb on - strand at 251.851 kb on + strand, within HMPREF1078_RS13970 at 251.851 kb on + strand, within HMPREF1078_RS13970 at 251.865 kb on - strand, within HMPREF1078_RS13970 at 251.865 kb on - strand, within HMPREF1078_RS13970 at 251.903 kb on + strand, within HMPREF1078_RS13970 at 252.029 kb on + strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.058 kb on - strand, within HMPREF1078_RS13970 at 252.058 kb on - strand, within HMPREF1078_RS13970 at 252.117 kb on - strand, within HMPREF1078_RS13970 at 252.131 kb on + strand, within HMPREF1078_RS13970 at 252.131 kb on + strand, within HMPREF1078_RS13970 at 252.216 kb on + strand, within HMPREF1078_RS13970 at 252.217 kb on - strand, within HMPREF1078_RS13970 at 252.232 kb on - strand, within HMPREF1078_RS13970 at 252.351 kb on - strand, within HMPREF1078_RS13970 at 252.466 kb on - strand, within HMPREF1078_RS13970 at 252.478 kb on - strand, within HMPREF1078_RS13970 at 252.481 kb on + strand, within HMPREF1078_RS13970 at 252.527 kb on + strand, within HMPREF1078_RS13970 at 252.614 kb on - strand at 252.641 kb on + strand at 252.642 kb on - strand at 252.642 kb on - strand at 252.645 kb on + strand at 252.645 kb on + strand at 252.645 kb on + strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.671 kb on + strand at 252.729 kb on + strand at 252.780 kb on - strand at 252.958 kb on + strand at 252.959 kb on - strand at 252.959 kb on - strand at 252.985 kb on + strand at 252.985 kb on + strand at 252.991 kb on + strand at 252.992 kb on - strand at 253.134 kb on - strand at 253.134 kb on - strand at 253.189 kb on + strand at 253.189 kb on + strand at 253.189 kb on + strand at 253.205 kb on - strand at 253.284 kb on - strand, within HMPREF1078_RS13975 at 253.318 kb on + strand, within HMPREF1078_RS13975 at 253.390 kb on - strand, within HMPREF1078_RS13975
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 251,708 - -0.9 251,722 + +0.2 251,723 - +0.3 251,723 - -0.6 251,723 - +0.8 251,727 - +0.3 251,738 - -0.5 251,738 - -0.8 251,787 + +1.2 251,789 + -1.8 251,789 + +1.2 251,790 - -1.6 251,791 + -0.8 251,791 + -0.9 251,791 + -0.4 251,792 - -1.2 251,807 - -1.1 251,807 - -2.1 251,814 - +0.2 251,851 + HMPREF1078_RS13970 0.14 +1.2 251,851 + HMPREF1078_RS13970 0.14 -2.7 251,865 - HMPREF1078_RS13970 0.16 +1.2 251,865 - HMPREF1078_RS13970 0.16 -1.8 251,903 + HMPREF1078_RS13970 0.20 -0.4 252,029 + HMPREF1078_RS13970 0.34 -2.1 252,030 - HMPREF1078_RS13970 0.34 -0.8 252,030 - HMPREF1078_RS13970 0.34 +0.2 252,030 - HMPREF1078_RS13970 0.34 -2.0 252,057 + HMPREF1078_RS13970 0.37 -2.1 252,057 + HMPREF1078_RS13970 0.37 -0.7 252,057 + HMPREF1078_RS13970 0.37 -1.4 252,057 + HMPREF1078_RS13970 0.37 -1.4 252,057 + HMPREF1078_RS13970 0.37 -1.6 252,058 - HMPREF1078_RS13970 0.37 -2.3 252,058 - HMPREF1078_RS13970 0.37 -1.1 252,117 - HMPREF1078_RS13970 0.43 -2.0 252,131 + HMPREF1078_RS13970 0.45 -2.1 252,131 + HMPREF1078_RS13970 0.45 +1.2 252,216 + HMPREF1078_RS13970 0.54 -1.6 252,217 - HMPREF1078_RS13970 0.54 -0.8 252,232 - HMPREF1078_RS13970 0.56 -0.4 252,351 - HMPREF1078_RS13970 0.69 -1.0 252,466 - HMPREF1078_RS13970 0.82 +1.2 252,478 - HMPREF1078_RS13970 0.83 -0.4 252,481 + HMPREF1078_RS13970 0.84 +1.2 252,527 + HMPREF1078_RS13970 0.89 -1.8 252,614 - -2.3 252,641 + -2.1 252,642 - -0.9 252,642 - -1.7 252,645 + -1.4 252,645 + -1.1 252,645 + -0.4 252,646 - -0.4 252,646 - +0.7 252,646 - -3.3 252,646 - +1.3 252,646 - -1.2 252,646 - -2.1 252,671 + +0.4 252,729 + -0.9 252,780 - +1.3 252,958 + +0.3 252,959 - +0.6 252,959 - +0.2 252,985 + -0.1 252,985 + -1.1 252,991 + +1.1 252,992 - -1.8 253,134 - +0.2 253,134 - +0.9 253,189 + +1.2 253,189 + +0.7 253,189 + -0.8 253,205 - +0.0 253,284 - HMPREF1078_RS13975 0.16 +1.4 253,318 + HMPREF1078_RS13975 0.23 -1.1 253,390 - HMPREF1078_RS13975 0.38 +2.8
Or see this region's nucleotide sequence