Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13265 and HMPREF1078_RS13270 are separated by 1 nucleotides HMPREF1078_RS13270 and HMPREF1078_RS13275 are separated by 21 nucleotides HMPREF1078_RS13275 and HMPREF1078_RS13280 are separated by 112 nucleotides
HMPREF1078_RS13265: HMPREF1078_RS13265 - HAMP domain-containing sensor histidine kinase, at 84,870 to 85,991
_RS13265
HMPREF1078_RS13270: HMPREF1078_RS13270 - ATP-binding protein, at 85,993 to 86,403
_RS13270
HMPREF1078_RS13275: HMPREF1078_RS13275 - STAS domain-containing protein, at 86,425 to 86,724
_RS13275
HMPREF1078_RS13280: HMPREF1078_RS13280 - Gfo/Idh/MocA family oxidoreductase, at 86,837 to 88,150
_RS13280
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.048 kb on - strand, within HMPREF1078_RS13265 at 85.134 kb on + strand, within HMPREF1078_RS13265 at 85.134 kb on + strand, within HMPREF1078_RS13265 at 85.135 kb on - strand, within HMPREF1078_RS13265 at 85.142 kb on - strand, within HMPREF1078_RS13265 at 85.278 kb on + strand, within HMPREF1078_RS13265 at 85.284 kb on + strand, within HMPREF1078_RS13265 at 85.284 kb on + strand, within HMPREF1078_RS13265 at 85.473 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.829 kb on - strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.842 kb on + strand, within HMPREF1078_RS13265 at 85.889 kb on - strand at 85.923 kb on + strand at 85.924 kb on - strand at 85.935 kb on + strand at 85.936 kb on - strand at 85.968 kb on - strand at 85.968 kb on - strand at 85.968 kb on - strand at 85.991 kb on + strand at 85.992 kb on - strand at 86.020 kb on + strand at 86.045 kb on + strand, within HMPREF1078_RS13270 at 86.045 kb on + strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.122 kb on - strand, within HMPREF1078_RS13270 at 86.122 kb on - strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.353 kb on + strand, within HMPREF1078_RS13270 at 86.362 kb on + strand, within HMPREF1078_RS13270 at 86.363 kb on - strand at 86.383 kb on + strand at 86.384 kb on - strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.386 kb on - strand at 86.386 kb on - strand at 86.390 kb on - strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.395 kb on - strand at 86.419 kb on + strand at 86.420 kb on - strand at 86.490 kb on + strand, within HMPREF1078_RS13275 at 86.541 kb on + strand, within HMPREF1078_RS13275 at 86.573 kb on + strand, within HMPREF1078_RS13275 at 86.574 kb on - strand, within HMPREF1078_RS13275 at 86.574 kb on - strand, within HMPREF1078_RS13275 at 86.664 kb on + strand, within HMPREF1078_RS13275 at 86.665 kb on - strand, within HMPREF1078_RS13275 at 86.711 kb on - strand at 86.724 kb on + strand at 86.725 kb on - strand at 86.735 kb on + strand at 86.764 kb on + strand at 86.768 kb on + strand at 86.795 kb on - strand at 86.869 kb on - strand at 86.880 kb on - strand at 86.883 kb on + strand at 86.884 kb on - strand at 86.947 kb on - strand at 86.961 kb on - strand at 87.008 kb on - strand, within HMPREF1078_RS13280 at 87.031 kb on + strand, within HMPREF1078_RS13280 at 87.031 kb on + strand, within HMPREF1078_RS13280 at 87.032 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.372 kb on + strand, within HMPREF1078_RS13280 at 87.375 kb on - strand, within HMPREF1078_RS13280
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 85,048 - HMPREF1078_RS13265 0.16 -2.0 85,134 + HMPREF1078_RS13265 0.24 -0.6 85,134 + HMPREF1078_RS13265 0.24 +0.1 85,135 - HMPREF1078_RS13265 0.24 +1.2 85,142 - HMPREF1078_RS13265 0.24 -0.2 85,278 + HMPREF1078_RS13265 0.36 +1.0 85,284 + HMPREF1078_RS13265 0.37 +1.1 85,284 + HMPREF1078_RS13265 0.37 -0.2 85,473 - HMPREF1078_RS13265 0.54 +1.2 85,592 - HMPREF1078_RS13265 0.64 -1.0 85,592 - HMPREF1078_RS13265 0.64 +1.0 85,592 - HMPREF1078_RS13265 0.64 -0.3 85,829 - HMPREF1078_RS13265 0.85 -0.4 85,832 + HMPREF1078_RS13265 0.86 -0.4 85,832 + HMPREF1078_RS13265 0.86 -0.7 85,832 + HMPREF1078_RS13265 0.86 -1.8 85,833 - HMPREF1078_RS13265 0.86 +1.0 85,833 - HMPREF1078_RS13265 0.86 +1.4 85,833 - HMPREF1078_RS13265 0.86 -1.4 85,835 - HMPREF1078_RS13265 0.86 +1.3 85,835 - HMPREF1078_RS13265 0.86 -1.0 85,835 - HMPREF1078_RS13265 0.86 +0.8 85,842 + HMPREF1078_RS13265 0.87 -0.2 85,889 - -0.2 85,923 + +0.2 85,924 - -1.0 85,935 + +1.2 85,936 - -0.4 85,968 - +1.0 85,968 - +0.8 85,968 - -0.1 85,991 + -0.7 85,992 - +1.1 86,020 + -1.4 86,045 + HMPREF1078_RS13270 0.13 -0.8 86,045 + HMPREF1078_RS13270 0.13 -1.6 86,046 - HMPREF1078_RS13270 0.13 -2.7 86,046 - HMPREF1078_RS13270 0.13 -1.6 86,046 - HMPREF1078_RS13270 0.13 -2.8 86,121 + HMPREF1078_RS13270 0.31 -2.3 86,121 + HMPREF1078_RS13270 0.31 -1.4 86,121 + HMPREF1078_RS13270 0.31 -1.8 86,122 - HMPREF1078_RS13270 0.31 -1.6 86,122 - HMPREF1078_RS13270 0.31 -1.4 86,321 + HMPREF1078_RS13270 0.80 +0.2 86,321 + HMPREF1078_RS13270 0.80 -3.2 86,321 + HMPREF1078_RS13270 0.80 -1.8 86,321 + HMPREF1078_RS13270 0.80 -2.2 86,322 - HMPREF1078_RS13270 0.80 -2.4 86,322 - HMPREF1078_RS13270 0.80 -2.7 86,322 - HMPREF1078_RS13270 0.80 -0.8 86,353 + HMPREF1078_RS13270 0.88 -2.2 86,362 + HMPREF1078_RS13270 0.90 -0.4 86,363 - -1.8 86,383 + -2.7 86,384 - -1.6 86,385 + +0.2 86,385 + -2.3 86,385 + -2.5 86,385 + -2.0 86,386 - -1.6 86,386 - -2.2 86,390 - -0.4 86,394 + -1.8 86,394 + -1.6 86,394 + -2.4 86,394 + -0.8 86,394 + -1.6 86,395 - -0.8 86,419 + -2.7 86,420 - +0.3 86,490 + HMPREF1078_RS13275 0.22 +1.8 86,541 + HMPREF1078_RS13275 0.39 -1.0 86,573 + HMPREF1078_RS13275 0.49 -1.5 86,574 - HMPREF1078_RS13275 0.50 -1.6 86,574 - HMPREF1078_RS13275 0.50 -1.9 86,664 + HMPREF1078_RS13275 0.80 +1.7 86,665 - HMPREF1078_RS13275 0.80 -1.2 86,711 - -2.6 86,724 + +1.1 86,725 - -1.1 86,735 + -1.4 86,764 + -2.3 86,768 + -1.8 86,795 - -1.2 86,869 - -0.2 86,880 - +0.0 86,883 + -0.8 86,884 - -2.6 86,947 - +0.4 86,961 - -0.8 87,008 - HMPREF1078_RS13280 0.13 +1.2 87,031 + HMPREF1078_RS13280 0.15 -0.6 87,031 + HMPREF1078_RS13280 0.15 -0.3 87,032 - HMPREF1078_RS13280 0.15 +1.0 87,344 - HMPREF1078_RS13280 0.39 -0.3 87,344 - HMPREF1078_RS13280 0.39 +0.2 87,344 - HMPREF1078_RS13280 0.39 -0.2 87,372 + HMPREF1078_RS13280 0.41 -0.8 87,375 - HMPREF1078_RS13280 0.41 +0.8
Or see this region's nucleotide sequence