Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13000 and HMPREF1078_RS13005 are separated by 30 nucleotides HMPREF1078_RS13005 and HMPREF1078_RS13010 are separated by 66 nucleotides
HMPREF1078_RS13000: HMPREF1078_RS13000 - 1-deoxy-D-xylulose-5-phosphate synthase, at 10,533 to 12,440
_RS13000
HMPREF1078_RS13005: HMPREF1078_RS13005 - Trk system potassium transporter TrkA, at 12,471 to 13,808
_RS13005
HMPREF1078_RS13010: HMPREF1078_RS13010 - TrkH family potassium uptake protein, at 13,875 to 15,329
_RS13010
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.442 kb on - strand at 12.443 kb on + strand at 12.443 kb on + strand at 12.449 kb on + strand at 12.451 kb on + strand at 12.455 kb on + strand at 12.461 kb on - strand at 12.465 kb on + strand at 12.466 kb on - strand at 12.502 kb on + strand at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.612 kb on - strand, within HMPREF1078_RS13005 at 12.731 kb on + strand, within HMPREF1078_RS13005 at 12.747 kb on - strand, within HMPREF1078_RS13005 at 13.169 kb on + strand, within HMPREF1078_RS13005 at 13.235 kb on - strand, within HMPREF1078_RS13005 at 13.244 kb on + strand, within HMPREF1078_RS13005 at 13.439 kb on + strand, within HMPREF1078_RS13005 at 13.468 kb on + strand, within HMPREF1078_RS13005 at 13.469 kb on - strand, within HMPREF1078_RS13005 at 13.784 kb on + strand at 13.802 kb on + strand at 13.802 kb on + strand at 13.871 kb on + strand at 13.872 kb on - strand at 13.874 kb on + strand at 13.894 kb on + strand at 13.966 kb on + strand at 14.036 kb on + strand, within HMPREF1078_RS13010 at 14.137 kb on + strand, within HMPREF1078_RS13010 at 14.149 kb on + strand, within HMPREF1078_RS13010 at 14.157 kb on + strand, within HMPREF1078_RS13010 at 14.158 kb on - strand, within HMPREF1078_RS13010 at 14.158 kb on - strand, within HMPREF1078_RS13010 at 14.160 kb on - strand, within HMPREF1078_RS13010 at 14.161 kb on + strand, within HMPREF1078_RS13010 at 14.181 kb on + strand, within HMPREF1078_RS13010 at 14.181 kb on + strand, within HMPREF1078_RS13010 at 14.439 kb on + strand, within HMPREF1078_RS13010 at 14.439 kb on + strand, within HMPREF1078_RS13010 at 14.463 kb on - strand, within HMPREF1078_RS13010 at 14.751 kb on + strand, within HMPREF1078_RS13010 at 14.752 kb on - strand, within HMPREF1078_RS13010
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 12,441 + -0.6 12,441 + -2.5 12,441 + +0.2 12,441 + -0.6 12,441 + +0.9 12,442 - +0.2 12,443 + +0.8 12,443 + +0.6 12,449 + +2.7 12,451 + -0.8 12,455 + +1.0 12,461 - -0.8 12,465 + -0.3 12,466 - +1.2 12,502 + +0.2 12,611 + HMPREF1078_RS13005 0.10 -0.8 12,611 + HMPREF1078_RS13005 0.10 -0.4 12,611 + HMPREF1078_RS13005 0.10 -1.2 12,612 - HMPREF1078_RS13005 0.11 -0.8 12,731 + HMPREF1078_RS13005 0.19 +1.2 12,747 - HMPREF1078_RS13005 0.21 -0.4 13,169 + HMPREF1078_RS13005 0.52 +0.2 13,235 - HMPREF1078_RS13005 0.57 -0.4 13,244 + HMPREF1078_RS13005 0.58 -1.2 13,439 + HMPREF1078_RS13005 0.72 -1.6 13,468 + HMPREF1078_RS13005 0.75 +1.2 13,469 - HMPREF1078_RS13005 0.75 +1.2 13,784 + -1.4 13,802 + -0.8 13,802 + -1.2 13,871 + -0.0 13,872 - +2.2 13,874 + +0.7 13,894 + -1.2 13,966 + -0.4 14,036 + HMPREF1078_RS13010 0.11 +1.2 14,137 + HMPREF1078_RS13010 0.18 +1.6 14,149 + HMPREF1078_RS13010 0.19 -0.4 14,157 + HMPREF1078_RS13010 0.19 +0.2 14,158 - HMPREF1078_RS13010 0.19 -0.8 14,158 - HMPREF1078_RS13010 0.19 +1.2 14,160 - HMPREF1078_RS13010 0.20 -0.8 14,161 + HMPREF1078_RS13010 0.20 -1.2 14,181 + HMPREF1078_RS13010 0.21 -0.8 14,181 + HMPREF1078_RS13010 0.21 -1.2 14,439 + HMPREF1078_RS13010 0.39 +0.4 14,439 + HMPREF1078_RS13010 0.39 +1.2 14,463 - HMPREF1078_RS13010 0.40 +1.4 14,751 + HMPREF1078_RS13010 0.60 +1.2 14,752 - HMPREF1078_RS13010 0.60 -0.4
Or see this region's nucleotide sequence