Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12635 and HMPREF1078_RS12640 are separated by 3 nucleotides HMPREF1078_RS12640 and HMPREF1078_RS12645 are separated by 2 nucleotides HMPREF1078_RS12645 and HMPREF1078_RS18820 are separated by 120 nucleotides
HMPREF1078_RS12635: HMPREF1078_RS12635 - D-alanine--D-alanine ligase, at 551,573 to 552,550
_RS12635
HMPREF1078_RS12640: HMPREF1078_RS12640 - RluA family pseudouridine synthase, at 552,554 to 553,633
_RS12640
HMPREF1078_RS12645: HMPREF1078_RS12645 - PASTA domain-containing protein, at 553,636 to 554,268
_RS12645
HMPREF1078_RS18820: HMPREF1078_RS18820 - 50S ribosomal protein L34, at 554,389 to 554,541
_RS18820
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 552.556 kb on - strand at 552.556 kb on - strand at 552.577 kb on - strand at 552.579 kb on - strand at 552.579 kb on - strand at 552.733 kb on - strand, within HMPREF1078_RS12640 at 552.806 kb on - strand, within HMPREF1078_RS12640 at 552.808 kb on - strand, within HMPREF1078_RS12640 at 552.825 kb on - strand, within HMPREF1078_RS12640 at 552.879 kb on - strand, within HMPREF1078_RS12640 at 552.968 kb on - strand, within HMPREF1078_RS12640 at 553.121 kb on - strand, within HMPREF1078_RS12640 at 553.121 kb on - strand, within HMPREF1078_RS12640 at 553.121 kb on - strand, within HMPREF1078_RS12640 at 553.121 kb on - strand, within HMPREF1078_RS12640 at 553.171 kb on - strand, within HMPREF1078_RS12640 at 553.171 kb on - strand, within HMPREF1078_RS12640 at 553.171 kb on - strand, within HMPREF1078_RS12640 at 553.175 kb on - strand, within HMPREF1078_RS12640 at 553.175 kb on - strand, within HMPREF1078_RS12640 at 553.245 kb on - strand, within HMPREF1078_RS12640 at 553.245 kb on - strand, within HMPREF1078_RS12640 at 553.358 kb on - strand, within HMPREF1078_RS12640 at 553.358 kb on - strand, within HMPREF1078_RS12640 at 553.358 kb on - strand, within HMPREF1078_RS12640 at 553.424 kb on - strand, within HMPREF1078_RS12640 at 553.424 kb on - strand, within HMPREF1078_RS12640 at 553.424 kb on - strand, within HMPREF1078_RS12640 at 553.424 kb on - strand, within HMPREF1078_RS12640 at 553.546 kb on - strand at 553.562 kb on - strand at 553.562 kb on - strand at 553.584 kb on - strand at 553.596 kb on - strand at 553.660 kb on - strand at 554.280 kb on - strand at 554.391 kb on - strand at 554.399 kb on + strand at 554.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 552,556 - -2.5 552,556 - -0.4 552,577 - -2.8 552,579 - -1.3 552,579 - -1.8 552,733 - HMPREF1078_RS12640 0.17 +0.2 552,806 - HMPREF1078_RS12640 0.23 +0.2 552,808 - HMPREF1078_RS12640 0.24 -0.8 552,825 - HMPREF1078_RS12640 0.25 -1.4 552,879 - HMPREF1078_RS12640 0.30 -0.4 552,968 - HMPREF1078_RS12640 0.38 -2.3 553,121 - HMPREF1078_RS12640 0.53 -1.4 553,121 - HMPREF1078_RS12640 0.53 -1.4 553,121 - HMPREF1078_RS12640 0.53 +1.2 553,121 - HMPREF1078_RS12640 0.53 +1.2 553,171 - HMPREF1078_RS12640 0.57 -0.8 553,171 - HMPREF1078_RS12640 0.57 -0.8 553,171 - HMPREF1078_RS12640 0.57 +1.2 553,175 - HMPREF1078_RS12640 0.57 +0.9 553,175 - HMPREF1078_RS12640 0.57 -1.2 553,245 - HMPREF1078_RS12640 0.64 -2.0 553,245 - HMPREF1078_RS12640 0.64 -1.2 553,358 - HMPREF1078_RS12640 0.74 -1.2 553,358 - HMPREF1078_RS12640 0.74 +0.2 553,358 - HMPREF1078_RS12640 0.74 -0.8 553,424 - HMPREF1078_RS12640 0.81 -1.4 553,424 - HMPREF1078_RS12640 0.81 +1.2 553,424 - HMPREF1078_RS12640 0.81 -1.2 553,424 - HMPREF1078_RS12640 0.81 -1.4 553,546 - -0.4 553,562 - -2.2 553,562 - -1.2 553,584 - +1.2 553,596 - -0.4 553,660 - +0.6 554,280 - -0.8 554,391 - -1.4 554,399 + -0.8 554,570 - -0.3
Or see this region's nucleotide sequence