Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06960 and HMPREF1078_RS06965 are separated by 3 nucleotides HMPREF1078_RS06965 and HMPREF1078_RS06970 are separated by 118 nucleotides HMPREF1078_RS06970 and HMPREF1078_RS06975 are separated by 56 nucleotides HMPREF1078_RS06975 and HMPREF1078_RS06980 are separated by 70 nucleotides
HMPREF1078_RS06960: HMPREF1078_RS06960 - endonuclease/exonuclease/phosphatase family protein, at 800,613 to 801,491
_RS06960
HMPREF1078_RS06965: HMPREF1078_RS06965 - helix-hairpin-helix domain-containing protein, at 801,495 to 802,265
_RS06965
HMPREF1078_RS06970: HMPREF1078_RS06970 - sodium-dependent transporter, at 802,384 to 803,751
_RS06970
HMPREF1078_RS06975: HMPREF1078_RS06975 - ABC transporter ATP-binding protein, at 803,808 to 804,476
_RS06975
HMPREF1078_RS06980: HMPREF1078_RS06980 - tRNA threonylcarbamoyladenosine dehydratase, at 804,547 to 805,272
_RS06980
Position (kb) 802
803
804 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 801.414 kb on + strand at 801.414 kb on + strand at 801.431 kb on + strand at 801.475 kb on + strand at 801.496 kb on + strand at 801.497 kb on - strand at 801.511 kb on + strand at 801.512 kb on - strand at 801.638 kb on - strand, within HMPREF1078_RS06965 at 801.690 kb on + strand, within HMPREF1078_RS06965 at 801.691 kb on - strand, within HMPREF1078_RS06965 at 801.754 kb on + strand, within HMPREF1078_RS06965 at 801.806 kb on - strand, within HMPREF1078_RS06965 at 801.925 kb on - strand, within HMPREF1078_RS06965 at 801.925 kb on - strand, within HMPREF1078_RS06965 at 801.926 kb on - strand, within HMPREF1078_RS06965 at 801.930 kb on - strand, within HMPREF1078_RS06965 at 801.931 kb on + strand, within HMPREF1078_RS06965 at 801.932 kb on - strand, within HMPREF1078_RS06965 at 801.954 kb on - strand, within HMPREF1078_RS06965 at 801.968 kb on + strand, within HMPREF1078_RS06965 at 801.968 kb on + strand, within HMPREF1078_RS06965 at 801.989 kb on + strand, within HMPREF1078_RS06965 at 801.989 kb on + strand, within HMPREF1078_RS06965 at 802.176 kb on + strand, within HMPREF1078_RS06965 at 802.243 kb on + strand at 802.268 kb on + strand at 802.268 kb on + strand at 802.268 kb on + strand at 802.303 kb on + strand at 802.312 kb on + strand at 802.330 kb on - strand at 802.343 kb on - strand at 802.343 kb on - strand at 802.344 kb on + strand at 802.373 kb on - strand at 802.432 kb on + strand at 802.433 kb on - strand at 802.460 kb on + strand at 802.586 kb on - strand, within HMPREF1078_RS06970 at 802.660 kb on + strand, within HMPREF1078_RS06970 at 802.702 kb on + strand, within HMPREF1078_RS06970 at 802.761 kb on + strand, within HMPREF1078_RS06970 at 802.794 kb on + strand, within HMPREF1078_RS06970 at 802.824 kb on + strand, within HMPREF1078_RS06970 at 802.825 kb on - strand, within HMPREF1078_RS06970 at 802.825 kb on - strand, within HMPREF1078_RS06970 at 802.870 kb on + strand, within HMPREF1078_RS06970 at 802.871 kb on - strand, within HMPREF1078_RS06970 at 803.043 kb on - strand, within HMPREF1078_RS06970 at 803.148 kb on - strand, within HMPREF1078_RS06970 at 803.148 kb on - strand, within HMPREF1078_RS06970 at 803.188 kb on + strand, within HMPREF1078_RS06970 at 803.188 kb on + strand, within HMPREF1078_RS06970 at 803.189 kb on - strand, within HMPREF1078_RS06970 at 803.441 kb on + strand, within HMPREF1078_RS06970 at 803.481 kb on - strand, within HMPREF1078_RS06970 at 803.536 kb on - strand, within HMPREF1078_RS06970 at 803.536 kb on - strand, within HMPREF1078_RS06970 at 803.612 kb on + strand, within HMPREF1078_RS06970 at 803.616 kb on + strand at 803.617 kb on - strand at 803.652 kb on + strand at 803.652 kb on + strand at 803.653 kb on - strand at 803.653 kb on - strand at 803.654 kb on + strand at 803.704 kb on + strand at 803.789 kb on - strand at 804.535 kb on - strand at 804.535 kb on - strand at 804.574 kb on - strand at 804.574 kb on - strand at 804.579 kb on - strand at 804.587 kb on - strand at 804.587 kb on - strand at 804.591 kb on - strand at 804.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 801,414 + +0.7 801,414 + +0.4 801,431 + -2.2 801,475 + +1.1 801,496 + +0.5 801,497 - +0.5 801,511 + -1.7 801,512 - -0.1 801,638 - HMPREF1078_RS06965 0.19 +1.0 801,690 + HMPREF1078_RS06965 0.25 -0.2 801,691 - HMPREF1078_RS06965 0.25 -3.1 801,754 + HMPREF1078_RS06965 0.34 -0.1 801,806 - HMPREF1078_RS06965 0.40 -1.4 801,925 - HMPREF1078_RS06965 0.56 -0.2 801,925 - HMPREF1078_RS06965 0.56 +0.5 801,926 - HMPREF1078_RS06965 0.56 -0.6 801,930 - HMPREF1078_RS06965 0.56 +0.4 801,931 + HMPREF1078_RS06965 0.57 +0.0 801,932 - HMPREF1078_RS06965 0.57 -1.8 801,954 - HMPREF1078_RS06965 0.60 +0.9 801,968 + HMPREF1078_RS06965 0.61 -0.1 801,968 + HMPREF1078_RS06965 0.61 +0.1 801,989 + HMPREF1078_RS06965 0.64 +0.2 801,989 + HMPREF1078_RS06965 0.64 -1.3 802,176 + HMPREF1078_RS06965 0.88 +0.2 802,243 + +0.2 802,268 + -1.2 802,268 + -0.7 802,268 + -0.6 802,303 + +0.4 802,312 + +2.0 802,330 - -0.2 802,343 - -0.3 802,343 - +0.4 802,344 + +1.0 802,373 - -0.4 802,432 + -1.0 802,433 - +1.0 802,460 + -1.7 802,586 - HMPREF1078_RS06970 0.15 -1.8 802,660 + HMPREF1078_RS06970 0.20 +0.2 802,702 + HMPREF1078_RS06970 0.23 -1.7 802,761 + HMPREF1078_RS06970 0.28 -0.6 802,794 + HMPREF1078_RS06970 0.30 -0.1 802,824 + HMPREF1078_RS06970 0.32 -1.6 802,825 - HMPREF1078_RS06970 0.32 -2.2 802,825 - HMPREF1078_RS06970 0.32 -1.0 802,870 + HMPREF1078_RS06970 0.36 -1.1 802,871 - HMPREF1078_RS06970 0.36 -1.0 803,043 - HMPREF1078_RS06970 0.48 +1.0 803,148 - HMPREF1078_RS06970 0.56 -0.5 803,148 - HMPREF1078_RS06970 0.56 -0.6 803,188 + HMPREF1078_RS06970 0.59 +0.4 803,188 + HMPREF1078_RS06970 0.59 -1.0 803,189 - HMPREF1078_RS06970 0.59 -0.8 803,441 + HMPREF1078_RS06970 0.77 +0.1 803,481 - HMPREF1078_RS06970 0.80 +0.1 803,536 - HMPREF1078_RS06970 0.84 -0.6 803,536 - HMPREF1078_RS06970 0.84 +0.7 803,612 + HMPREF1078_RS06970 0.90 -0.6 803,616 + +0.7 803,617 - +1.2 803,652 + -1.2 803,652 + -1.8 803,653 - +0.3 803,653 - -0.1 803,654 + -0.7 803,704 + -0.2 803,789 - -0.7 804,535 - -0.4 804,535 - +0.6 804,574 - +1.0 804,574 - -0.8 804,579 - +0.8 804,587 - +1.0 804,587 - +1.0 804,591 - -1.1 804,613 - +0.5
Or see this region's nucleotide sequence