Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05505 and HMPREF1078_RS05510 are separated by 6 nucleotides HMPREF1078_RS05510 and HMPREF1078_RS05515 are separated by 47 nucleotides
HMPREF1078_RS05505: HMPREF1078_RS05505 - gliding motility protein GldL, at 390,406 to 391,437
_RS05505
HMPREF1078_RS05510: HMPREF1078_RS05510 - gliding motility protein GldM, at 391,444 to 393,012
_RS05510
HMPREF1078_RS05515: HMPREF1078_RS05515 - gliding motility protein GldN, at 393,060 to 394,151
_RS05515
Position (kb) 391
392
393
394 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 390.451 kb on + strand at 390.453 kb on + strand at 390.453 kb on + strand at 390.474 kb on + strand at 390.475 kb on - strand at 390.475 kb on - strand at 390.477 kb on + strand at 390.478 kb on - strand at 390.479 kb on + strand at 390.480 kb on - strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.565 kb on - strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.740 kb on + strand, within HMPREF1078_RS05505 at 390.820 kb on - strand, within HMPREF1078_RS05505 at 390.889 kb on + strand, within HMPREF1078_RS05505 at 390.890 kb on - strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.986 kb on - strand, within HMPREF1078_RS05505 at 390.988 kb on - strand, within HMPREF1078_RS05505 at 390.996 kb on + strand, within HMPREF1078_RS05505 at 391.098 kb on - strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.141 kb on - strand, within HMPREF1078_RS05505 at 391.175 kb on - strand, within HMPREF1078_RS05505 at 391.257 kb on - strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.279 kb on - strand, within HMPREF1078_RS05505 at 391.367 kb on - strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.417 kb on - strand at 391.435 kb on + strand at 391.461 kb on + strand at 391.461 kb on + strand at 391.501 kb on + strand at 391.502 kb on - strand at 391.502 kb on - strand at 391.584 kb on + strand at 391.585 kb on - strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.789 kb on - strand, within HMPREF1078_RS05510 at 391.792 kb on - strand, within HMPREF1078_RS05510 at 392.016 kb on + strand, within HMPREF1078_RS05510 at 392.038 kb on - strand, within HMPREF1078_RS05510 at 392.072 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.203 kb on - strand, within HMPREF1078_RS05510 at 392.210 kb on + strand, within HMPREF1078_RS05510 at 392.245 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.297 kb on + strand, within HMPREF1078_RS05510 at 392.332 kb on + strand, within HMPREF1078_RS05510 at 392.334 kb on + strand, within HMPREF1078_RS05510 at 392.389 kb on + strand, within HMPREF1078_RS05510 at 392.390 kb on - strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.651 kb on + strand, within HMPREF1078_RS05510 at 392.652 kb on - strand, within HMPREF1078_RS05510 at 392.679 kb on + strand, within HMPREF1078_RS05510 at 392.686 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.903 kb on - strand at 392.903 kb on - strand at 392.903 kb on - strand at 392.904 kb on + strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.936 kb on - strand at 392.936 kb on - strand at 392.954 kb on + strand at 392.955 kb on - strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.980 kb on - strand at 392.980 kb on - strand at 392.999 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.015 kb on + strand at 393.016 kb on - strand at 393.016 kb on - strand at 393.020 kb on + strand at 393.020 kb on + strand at 393.050 kb on - strand at 393.050 kb on - strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.058 kb on - strand at 393.059 kb on + strand at 393.059 kb on + strand at 393.060 kb on - strand at 393.070 kb on + strand at 393.070 kb on + strand at 393.071 kb on - strand at 393.072 kb on + strand at 393.073 kb on - strand at 393.074 kb on + strand at 393.075 kb on + strand at 393.075 kb on + strand at 393.076 kb on - strand at 393.076 kb on - strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.080 kb on - strand at 393.080 kb on - strand at 393.251 kb on + strand, within HMPREF1078_RS05515 at 393.276 kb on - strand, within HMPREF1078_RS05515 at 393.307 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.433 kb on - strand, within HMPREF1078_RS05515 at 393.439 kb on - strand, within HMPREF1078_RS05515 at 393.510 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.603 kb on + strand, within HMPREF1078_RS05515 at 393.604 kb on - strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.621 kb on + strand, within HMPREF1078_RS05515 at 393.750 kb on + strand, within HMPREF1078_RS05515 at 393.751 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.765 kb on + strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.767 kb on + strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.845 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 390,451 + -2.1 390,453 + -1.9 390,453 + -2.4 390,474 + -0.9 390,475 - +1.1 390,475 - -1.3 390,477 + -2.4 390,478 - -2.1 390,479 + -1.7 390,480 - +0.1 390,500 + -2.4 390,500 + -2.3 390,500 + -1.9 390,565 - HMPREF1078_RS05505 0.15 -1.9 390,669 + HMPREF1078_RS05505 0.25 -3.0 390,669 + HMPREF1078_RS05505 0.25 -1.5 390,740 + HMPREF1078_RS05505 0.32 +0.1 390,820 - HMPREF1078_RS05505 0.40 -1.3 390,889 + HMPREF1078_RS05505 0.47 -1.5 390,890 - HMPREF1078_RS05505 0.47 -1.9 390,909 + HMPREF1078_RS05505 0.49 -2.7 390,909 + HMPREF1078_RS05505 0.49 -3.0 390,986 - HMPREF1078_RS05505 0.56 -1.5 390,988 - HMPREF1078_RS05505 0.56 -1.5 390,996 + HMPREF1078_RS05505 0.57 -2.5 391,098 - HMPREF1078_RS05505 0.67 -2.1 391,140 + HMPREF1078_RS05505 0.71 -1.9 391,140 + HMPREF1078_RS05505 0.71 -3.1 391,140 + HMPREF1078_RS05505 0.71 -1.7 391,140 + HMPREF1078_RS05505 0.71 -1.9 391,140 + HMPREF1078_RS05505 0.71 -2.6 391,141 - HMPREF1078_RS05505 0.71 -2.1 391,175 - HMPREF1078_RS05505 0.75 -0.9 391,257 - HMPREF1078_RS05505 0.82 -2.1 391,258 + HMPREF1078_RS05505 0.83 -1.7 391,258 + HMPREF1078_RS05505 0.83 -1.3 391,258 + HMPREF1078_RS05505 0.83 -1.7 391,259 - HMPREF1078_RS05505 0.83 -0.5 391,259 - HMPREF1078_RS05505 0.83 -0.5 391,279 - HMPREF1078_RS05505 0.85 +1.1 391,367 - -2.4 391,416 + -2.4 391,416 + +1.1 391,416 + -1.5 391,417 - -1.7 391,435 + -2.3 391,461 + -0.5 391,461 + -2.3 391,501 + -1.5 391,502 - -2.3 391,502 - -0.9 391,584 + -0.9 391,585 - -0.5 391,590 + -2.4 391,591 - -2.4 391,642 + HMPREF1078_RS05510 0.13 -2.4 391,642 + HMPREF1078_RS05510 0.13 -0.5 391,642 + HMPREF1078_RS05510 0.13 -2.1 391,642 + HMPREF1078_RS05510 0.13 -2.6 391,642 + HMPREF1078_RS05510 0.13 -1.9 391,642 + HMPREF1078_RS05510 0.13 -0.9 391,643 - HMPREF1078_RS05510 0.13 +0.1 391,643 - HMPREF1078_RS05510 0.13 +1.1 391,667 + HMPREF1078_RS05510 0.14 +1.1 391,667 + HMPREF1078_RS05510 0.14 -2.1 391,727 - HMPREF1078_RS05510 0.18 -1.5 391,727 - HMPREF1078_RS05510 0.18 -3.2 391,789 - HMPREF1078_RS05510 0.22 -0.9 391,792 - HMPREF1078_RS05510 0.22 +0.1 392,016 + HMPREF1078_RS05510 0.36 -2.1 392,038 - HMPREF1078_RS05510 0.38 -1.7 392,072 - HMPREF1078_RS05510 0.40 -0.5 392,192 - HMPREF1078_RS05510 0.48 -2.6 392,192 - HMPREF1078_RS05510 0.48 -2.4 392,203 - HMPREF1078_RS05510 0.48 +0.1 392,210 + HMPREF1078_RS05510 0.49 -2.1 392,245 + HMPREF1078_RS05510 0.51 -2.1 392,269 + HMPREF1078_RS05510 0.53 +1.1 392,269 + HMPREF1078_RS05510 0.53 -1.5 392,270 - HMPREF1078_RS05510 0.53 -1.3 392,270 - HMPREF1078_RS05510 0.53 -2.3 392,297 + HMPREF1078_RS05510 0.54 -0.5 392,332 + HMPREF1078_RS05510 0.57 -0.5 392,334 + HMPREF1078_RS05510 0.57 -1.5 392,389 + HMPREF1078_RS05510 0.60 -1.7 392,390 - HMPREF1078_RS05510 0.60 -2.8 392,443 + HMPREF1078_RS05510 0.64 -2.3 392,443 + HMPREF1078_RS05510 0.64 -0.5 392,443 + HMPREF1078_RS05510 0.64 -2.6 392,601 + HMPREF1078_RS05510 0.74 -3.5 392,601 + HMPREF1078_RS05510 0.74 -2.6 392,651 + HMPREF1078_RS05510 0.77 +0.1 392,652 - HMPREF1078_RS05510 0.77 -0.5 392,679 + HMPREF1078_RS05510 0.79 -2.1 392,686 + HMPREF1078_RS05510 0.79 -1.3 392,688 + HMPREF1078_RS05510 0.79 -1.3 392,688 + HMPREF1078_RS05510 0.79 -1.5 392,688 + HMPREF1078_RS05510 0.79 -1.3 392,689 - HMPREF1078_RS05510 0.79 -0.5 392,689 - HMPREF1078_RS05510 0.79 -1.5 392,903 - -2.9 392,903 - +0.1 392,903 - -1.9 392,904 + -2.1 392,905 - -0.9 392,905 - -1.3 392,905 - -1.7 392,936 - -0.5 392,936 - -2.9 392,954 + -0.9 392,955 - -2.9 392,979 + -2.5 392,979 + -1.9 392,979 + -1.9 392,980 - -0.9 392,980 - -1.7 392,999 + -3.1 393,010 + +2.6 393,010 + -2.5 393,010 + +0.1 393,015 + -3.6 393,016 - -0.9 393,016 - -0.9 393,020 + -0.7 393,020 + -0.9 393,050 - -1.5 393,050 - -3.2 393,057 + -2.7 393,057 + -0.9 393,057 + -2.4 393,058 - -0.9 393,059 + +1.1 393,059 + +1.1 393,060 - -2.3 393,070 + -2.3 393,070 + -1.9 393,071 - -2.4 393,072 + -0.9 393,073 - -2.3 393,074 + -3.3 393,075 + +0.1 393,075 + -1.9 393,076 - -1.3 393,076 - -2.3 393,079 + +0.1 393,079 + -1.9 393,079 + -2.1 393,080 - -1.9 393,080 - -0.5 393,251 + HMPREF1078_RS05515 0.17 -2.9 393,276 - HMPREF1078_RS05515 0.20 -1.7 393,307 - HMPREF1078_RS05515 0.23 +1.1 393,324 - HMPREF1078_RS05515 0.24 -0.5 393,324 - HMPREF1078_RS05515 0.24 -1.5 393,346 + HMPREF1078_RS05515 0.26 -1.9 393,346 + HMPREF1078_RS05515 0.26 -1.9 393,346 + HMPREF1078_RS05515 0.26 -2.5 393,347 - HMPREF1078_RS05515 0.26 -1.7 393,347 - HMPREF1078_RS05515 0.26 -1.5 393,348 + HMPREF1078_RS05515 0.26 -0.9 393,348 + HMPREF1078_RS05515 0.26 +0.1 393,348 + HMPREF1078_RS05515 0.26 -1.9 393,348 + HMPREF1078_RS05515 0.26 -1.7 393,349 - HMPREF1078_RS05515 0.26 -2.8 393,349 - HMPREF1078_RS05515 0.26 -0.5 393,349 - HMPREF1078_RS05515 0.26 -0.5 393,351 + HMPREF1078_RS05515 0.27 -2.4 393,351 + HMPREF1078_RS05515 0.27 -2.1 393,433 - HMPREF1078_RS05515 0.34 -1.9 393,439 - HMPREF1078_RS05515 0.35 -1.7 393,510 - HMPREF1078_RS05515 0.41 -1.3 393,601 - HMPREF1078_RS05515 0.50 -1.7 393,601 - HMPREF1078_RS05515 0.50 -2.8 393,601 - HMPREF1078_RS05515 0.50 -2.8 393,603 + HMPREF1078_RS05515 0.50 -0.5 393,604 - HMPREF1078_RS05515 0.50 -2.9 393,607 + HMPREF1078_RS05515 0.50 -2.4 393,607 + HMPREF1078_RS05515 0.50 -2.3 393,608 - HMPREF1078_RS05515 0.50 -1.7 393,608 - HMPREF1078_RS05515 0.50 +0.1 393,608 - HMPREF1078_RS05515 0.50 -2.6 393,621 + HMPREF1078_RS05515 0.51 -4.0 393,750 + HMPREF1078_RS05515 0.63 -2.6 393,751 - HMPREF1078_RS05515 0.63 -2.5 393,753 - HMPREF1078_RS05515 0.63 -1.9 393,753 - HMPREF1078_RS05515 0.63 -1.3 393,765 + HMPREF1078_RS05515 0.65 -1.3 393,766 - HMPREF1078_RS05515 0.65 -1.7 393,766 - HMPREF1078_RS05515 0.65 +0.1 393,767 + HMPREF1078_RS05515 0.65 -0.9 393,768 - HMPREF1078_RS05515 0.65 +1.1 393,768 - HMPREF1078_RS05515 0.65 -2.3 393,845 + HMPREF1078_RS05515 0.72 -2.3 394,001 + HMPREF1078_RS05515 0.86 -5.6 394,001 + HMPREF1078_RS05515 0.86 -2.3 394,001 + HMPREF1078_RS05515 0.86 -1.7
Or see this region's nucleotide sequence