Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05150 and HMPREF1078_RS05155 are separated by 175 nucleotides HMPREF1078_RS05155 and HMPREF1078_RS05160 are separated by 180 nucleotides HMPREF1078_RS05160 and HMPREF1078_RS05165 are separated by 300 nucleotides
HMPREF1078_RS05150: HMPREF1078_RS05150 - Fic family protein, at 291,637 to 292,446
_RS05150
HMPREF1078_RS05155: HMPREF1078_RS05155 - tRNA-Leu, at 292,622 to 292,705
_RS05155
HMPREF1078_RS05160: HMPREF1078_RS05160 - mannose-1-phosphate guanylyltransferase, at 292,886 to 293,965
_RS05160
HMPREF1078_RS05165: HMPREF1078_RS05165 - GSCFA domain-containing protein, at 294,266 to 295,249
_RS05165
Position (kb) 292
293
294 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 291.895 kb on - strand, within HMPREF1078_RS05150 at 291.895 kb on - strand, within HMPREF1078_RS05150 at 292.017 kb on - strand, within HMPREF1078_RS05150 at 292.026 kb on - strand, within HMPREF1078_RS05150 at 292.171 kb on - strand, within HMPREF1078_RS05150 at 292.243 kb on + strand, within HMPREF1078_RS05150 at 292.322 kb on - strand, within HMPREF1078_RS05150 at 292.350 kb on - strand, within HMPREF1078_RS05150 at 292.358 kb on + strand, within HMPREF1078_RS05150 at 292.358 kb on + strand, within HMPREF1078_RS05150 at 292.367 kb on + strand at 292.410 kb on - strand at 292.454 kb on - strand at 292.489 kb on - strand at 292.489 kb on - strand at 292.489 kb on - strand at 292.496 kb on - strand at 292.514 kb on + strand at 292.523 kb on - strand at 292.523 kb on - strand at 292.523 kb on - strand at 292.531 kb on - strand at 292.531 kb on - strand at 292.604 kb on - strand at 292.607 kb on + strand at 292.797 kb on - strand at 292.798 kb on + strand at 292.813 kb on + strand at 292.814 kb on - strand at 292.820 kb on - strand at 292.859 kb on - strand at 292.859 kb on - strand at 292.859 kb on - strand at 292.963 kb on + strand at 293.004 kb on + strand, within HMPREF1078_RS05160 at 293.055 kb on - strand, within HMPREF1078_RS05160 at 293.056 kb on + strand, within HMPREF1078_RS05160 at 293.056 kb on + strand, within HMPREF1078_RS05160 at 293.057 kb on - strand, within HMPREF1078_RS05160 at 293.089 kb on - strand, within HMPREF1078_RS05160 at 293.125 kb on - strand, within HMPREF1078_RS05160 at 293.125 kb on - strand, within HMPREF1078_RS05160 at 293.146 kb on + strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.149 kb on + strand, within HMPREF1078_RS05160 at 293.149 kb on + strand, within HMPREF1078_RS05160 at 293.169 kb on - strand, within HMPREF1078_RS05160 at 293.178 kb on - strand, within HMPREF1078_RS05160 at 293.178 kb on - strand, within HMPREF1078_RS05160 at 293.182 kb on + strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.209 kb on + strand, within HMPREF1078_RS05160 at 293.210 kb on - strand, within HMPREF1078_RS05160 at 293.234 kb on - strand, within HMPREF1078_RS05160 at 293.307 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.354 kb on + strand, within HMPREF1078_RS05160 at 293.354 kb on + strand, within HMPREF1078_RS05160 at 293.356 kb on + strand, within HMPREF1078_RS05160 at 293.357 kb on - strand, within HMPREF1078_RS05160 at 293.372 kb on - strand, within HMPREF1078_RS05160 at 293.372 kb on - strand, within HMPREF1078_RS05160 at 293.612 kb on + strand, within HMPREF1078_RS05160 at 293.623 kb on + strand, within HMPREF1078_RS05160 at 293.624 kb on - strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.775 kb on - strand, within HMPREF1078_RS05160 at 293.835 kb on + strand, within HMPREF1078_RS05160 at 293.964 kb on - strand at 293.964 kb on - strand at 293.971 kb on - strand at 294.097 kb on + strand at 294.097 kb on + strand at 294.099 kb on + strand at 294.100 kb on - strand at 294.144 kb on + strand at 294.145 kb on - strand at 294.156 kb on + strand at 294.161 kb on - strand at 294.163 kb on - strand at 294.210 kb on - strand at 294.246 kb on - strand at 294.246 kb on - strand at 294.247 kb on + strand at 294.276 kb on - strand at 294.320 kb on - strand at 294.415 kb on + strand, within HMPREF1078_RS05165 at 294.423 kb on - strand, within HMPREF1078_RS05165 at 294.460 kb on - strand, within HMPREF1078_RS05165 at 294.512 kb on + strand, within HMPREF1078_RS05165 at 294.656 kb on + strand, within HMPREF1078_RS05165 at 294.656 kb on + strand, within HMPREF1078_RS05165 at 294.697 kb on + strand, within HMPREF1078_RS05165 at 294.730 kb on - strand, within HMPREF1078_RS05165 at 294.733 kb on + strand, within HMPREF1078_RS05165 at 294.734 kb on - strand, within HMPREF1078_RS05165
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 291,895 - HMPREF1078_RS05150 0.32 -0.5 291,895 - HMPREF1078_RS05150 0.32 +0.1 292,017 - HMPREF1078_RS05150 0.47 -1.2 292,026 - HMPREF1078_RS05150 0.48 -0.9 292,171 - HMPREF1078_RS05150 0.66 -0.3 292,243 + HMPREF1078_RS05150 0.75 +0.9 292,322 - HMPREF1078_RS05150 0.85 +0.5 292,350 - HMPREF1078_RS05150 0.88 +0.1 292,358 + HMPREF1078_RS05150 0.89 -0.5 292,358 + HMPREF1078_RS05150 0.89 -0.5 292,367 + -0.7 292,410 - -0.5 292,454 - +0.2 292,489 - -0.5 292,489 - -0.1 292,489 - +0.5 292,496 - -3.0 292,514 + +0.1 292,523 - -0.1 292,523 - +0.7 292,523 - -0.9 292,531 - -1.0 292,531 - +1.1 292,604 - +0.7 292,607 + +2.0 292,797 - +0.3 292,798 + -0.9 292,813 + -1.2 292,814 - -3.5 292,820 - -3.7 292,859 - -1.2 292,859 - +0.1 292,859 - -0.9 292,963 + +0.9 293,004 + HMPREF1078_RS05160 0.11 +1.1 293,055 - HMPREF1078_RS05160 0.16 -2.8 293,056 + HMPREF1078_RS05160 0.16 +1.1 293,056 + HMPREF1078_RS05160 0.16 -0.9 293,057 - HMPREF1078_RS05160 0.16 -2.5 293,089 - HMPREF1078_RS05160 0.19 -1.2 293,125 - HMPREF1078_RS05160 0.22 -1.5 293,125 - HMPREF1078_RS05160 0.22 -1.5 293,146 + HMPREF1078_RS05160 0.24 +0.1 293,147 - HMPREF1078_RS05160 0.24 -2.0 293,147 - HMPREF1078_RS05160 0.24 -0.9 293,147 - HMPREF1078_RS05160 0.24 -2.2 293,149 + HMPREF1078_RS05160 0.24 -2.2 293,149 + HMPREF1078_RS05160 0.24 +1.1 293,169 - HMPREF1078_RS05160 0.26 -2.0 293,178 - HMPREF1078_RS05160 0.27 -1.7 293,178 - HMPREF1078_RS05160 0.27 -1.8 293,182 + HMPREF1078_RS05160 0.27 -1.5 293,183 - HMPREF1078_RS05160 0.28 -0.5 293,183 - HMPREF1078_RS05160 0.28 -0.9 293,183 - HMPREF1078_RS05160 0.28 +0.1 293,183 - HMPREF1078_RS05160 0.28 -2.0 293,209 + HMPREF1078_RS05160 0.30 +1.1 293,210 - HMPREF1078_RS05160 0.30 +1.1 293,234 - HMPREF1078_RS05160 0.32 +1.1 293,307 + HMPREF1078_RS05160 0.39 -1.1 293,311 + HMPREF1078_RS05160 0.39 -0.5 293,311 + HMPREF1078_RS05160 0.39 -2.6 293,311 + HMPREF1078_RS05160 0.39 -1.2 293,312 - HMPREF1078_RS05160 0.39 +1.9 293,312 - HMPREF1078_RS05160 0.39 -0.9 293,312 - HMPREF1078_RS05160 0.39 +0.1 293,312 - HMPREF1078_RS05160 0.39 +0.1 293,354 + HMPREF1078_RS05160 0.43 -1.2 293,354 + HMPREF1078_RS05160 0.43 -1.2 293,356 + HMPREF1078_RS05160 0.44 +1.1 293,357 - HMPREF1078_RS05160 0.44 -1.7 293,372 - HMPREF1078_RS05160 0.45 -1.2 293,372 - HMPREF1078_RS05160 0.45 -0.9 293,612 + HMPREF1078_RS05160 0.67 -1.5 293,623 + HMPREF1078_RS05160 0.68 -1.5 293,624 - HMPREF1078_RS05160 0.68 +0.1 293,664 + HMPREF1078_RS05160 0.72 -2.0 293,664 + HMPREF1078_RS05160 0.72 -2.8 293,664 + HMPREF1078_RS05160 0.72 -2.7 293,665 - HMPREF1078_RS05160 0.72 +0.1 293,665 - HMPREF1078_RS05160 0.72 +0.1 293,665 - HMPREF1078_RS05160 0.72 -0.7 293,665 - HMPREF1078_RS05160 0.72 -2.7 293,665 - HMPREF1078_RS05160 0.72 -2.7 293,665 - HMPREF1078_RS05160 0.72 +0.1 293,666 + HMPREF1078_RS05160 0.72 -0.9 293,666 + HMPREF1078_RS05160 0.72 -1.4 293,666 + HMPREF1078_RS05160 0.72 -2.8 293,668 + HMPREF1078_RS05160 0.72 -1.7 293,668 + HMPREF1078_RS05160 0.72 -1.7 293,668 + HMPREF1078_RS05160 0.72 +1.1 293,668 + HMPREF1078_RS05160 0.72 -0.9 293,668 + HMPREF1078_RS05160 0.72 +1.1 293,668 + HMPREF1078_RS05160 0.72 -2.5 293,668 + HMPREF1078_RS05160 0.72 -2.5 293,668 + HMPREF1078_RS05160 0.72 -0.5 293,668 + HMPREF1078_RS05160 0.72 -0.9 293,669 - HMPREF1078_RS05160 0.72 -1.2 293,669 - HMPREF1078_RS05160 0.72 -1.0 293,669 - HMPREF1078_RS05160 0.72 -0.5 293,775 - HMPREF1078_RS05160 0.82 -0.9 293,835 + HMPREF1078_RS05160 0.88 -0.9 293,964 - +1.4 293,964 - -0.3 293,971 - -1.4 294,097 + -1.6 294,097 + -2.9 294,099 + -1.7 294,100 - +0.8 294,144 + +0.5 294,145 - -2.3 294,156 + +0.5 294,161 - -3.8 294,163 - -0.2 294,210 - +1.2 294,246 - +1.2 294,246 - +1.7 294,247 + +0.2 294,276 - -0.2 294,320 - -0.6 294,415 + HMPREF1078_RS05165 0.15 +0.0 294,423 - HMPREF1078_RS05165 0.16 +0.8 294,460 - HMPREF1078_RS05165 0.20 -0.7 294,512 + HMPREF1078_RS05165 0.25 +0.7 294,656 + HMPREF1078_RS05165 0.40 +0.2 294,656 + HMPREF1078_RS05165 0.40 +2.2 294,697 + HMPREF1078_RS05165 0.44 +0.9 294,730 - HMPREF1078_RS05165 0.47 -0.2 294,733 + HMPREF1078_RS05165 0.47 -1.0 294,734 - HMPREF1078_RS05165 0.48 +0.2
Or see this region's nucleotide sequence