Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02860 and HMPREF1078_RS02865 are separated by 18 nucleotides HMPREF1078_RS02865 and HMPREF1078_RS02870 overlap by 8 nucleotides
HMPREF1078_RS02860: HMPREF1078_RS02860 - PD-(D/E)XK nuclease-like domain-containing protein, at 688,065 to 689,270
_RS02860
HMPREF1078_RS02865: HMPREF1078_RS02865 - hypothetical protein, at 689,289 to 689,717
_RS02865
HMPREF1078_RS02870: HMPREF1078_RS02870 - hypothetical protein, at 689,710 to 690,447
_RS02870
Position (kb) 689
690 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.305 kb on + strand, within HMPREF1078_RS02860 at 688.305 kb on + strand, within HMPREF1078_RS02860 at 688.306 kb on - strand, within HMPREF1078_RS02860 at 688.417 kb on - strand, within HMPREF1078_RS02860 at 688.478 kb on - strand, within HMPREF1078_RS02860 at 688.505 kb on + strand, within HMPREF1078_RS02860 at 688.520 kb on - strand, within HMPREF1078_RS02860 at 688.659 kb on + strand, within HMPREF1078_RS02860 at 688.696 kb on + strand, within HMPREF1078_RS02860 at 688.725 kb on - strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.727 kb on + strand, within HMPREF1078_RS02860 at 688.728 kb on - strand, within HMPREF1078_RS02860 at 688.732 kb on - strand, within HMPREF1078_RS02860 at 688.784 kb on + strand, within HMPREF1078_RS02860 at 688.785 kb on - strand, within HMPREF1078_RS02860 at 688.923 kb on - strand, within HMPREF1078_RS02860 at 688.935 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 688.985 kb on - strand, within HMPREF1078_RS02860 at 689.110 kb on - strand, within HMPREF1078_RS02860 at 689.115 kb on + strand, within HMPREF1078_RS02860 at 689.164 kb on - strand at 689.173 kb on - strand at 689.208 kb on - strand at 689.208 kb on - strand at 689.259 kb on - strand at 689.269 kb on - strand at 689.269 kb on - strand at 689.273 kb on - strand at 689.289 kb on - strand at 689.340 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.379 kb on - strand, within HMPREF1078_RS02865 at 689.488 kb on - strand, within HMPREF1078_RS02865 at 689.617 kb on - strand, within HMPREF1078_RS02865 at 689.732 kb on + strand at 689.732 kb on + strand at 689.733 kb on - strand at 689.733 kb on - strand at 689.733 kb on - strand at 689.750 kb on - strand at 689.769 kb on - strand at 689.832 kb on + strand, within HMPREF1078_RS02870 at 689.846 kb on + strand, within HMPREF1078_RS02870 at 689.936 kb on + strand, within HMPREF1078_RS02870 at 689.942 kb on + strand, within HMPREF1078_RS02870 at 689.942 kb on + strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.943 kb on - strand, within HMPREF1078_RS02870 at 689.966 kb on - strand, within HMPREF1078_RS02870 at 689.974 kb on + strand, within HMPREF1078_RS02870 at 690.028 kb on - strand, within HMPREF1078_RS02870 at 690.028 kb on - strand, within HMPREF1078_RS02870 at 690.051 kb on + strand, within HMPREF1078_RS02870 at 690.138 kb on + strand, within HMPREF1078_RS02870 at 690.284 kb on + strand, within HMPREF1078_RS02870 at 690.338 kb on + strand, within HMPREF1078_RS02870 at 690.371 kb on - strand, within HMPREF1078_RS02870 at 690.371 kb on - strand, within HMPREF1078_RS02870 at 690.406 kb on - strand at 690.426 kb on + strand at 690.427 kb on - strand at 690.432 kb on - strand at 690.438 kb on - strand at 690.438 kb on - strand at 690.450 kb on - strand at 690.469 kb on - strand at 690.469 kb on - strand at 690.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 688,305 + HMPREF1078_RS02860 0.20 -0.4 688,305 + HMPREF1078_RS02860 0.20 +0.7 688,306 - HMPREF1078_RS02860 0.20 -1.1 688,417 - HMPREF1078_RS02860 0.29 +0.8 688,478 - HMPREF1078_RS02860 0.34 -1.1 688,505 + HMPREF1078_RS02860 0.36 -1.1 688,520 - HMPREF1078_RS02860 0.38 -0.4 688,659 + HMPREF1078_RS02860 0.49 +0.8 688,696 + HMPREF1078_RS02860 0.52 +1.2 688,725 - HMPREF1078_RS02860 0.55 +1.9 688,727 + HMPREF1078_RS02860 0.55 -2.3 688,727 + HMPREF1078_RS02860 0.55 -1.1 688,728 - HMPREF1078_RS02860 0.55 -1.4 688,732 - HMPREF1078_RS02860 0.55 -0.8 688,784 + HMPREF1078_RS02860 0.60 -1.4 688,785 - HMPREF1078_RS02860 0.60 -2.0 688,923 - HMPREF1078_RS02860 0.71 +0.1 688,935 - HMPREF1078_RS02860 0.72 -1.6 688,985 - HMPREF1078_RS02860 0.76 -0.4 688,985 - HMPREF1078_RS02860 0.76 -0.5 688,985 - HMPREF1078_RS02860 0.76 -0.8 689,110 - HMPREF1078_RS02860 0.87 +0.2 689,115 + HMPREF1078_RS02860 0.87 -0.8 689,164 - -1.8 689,173 - -0.6 689,208 - -2.3 689,208 - +0.2 689,259 - -1.8 689,269 - -0.4 689,269 - +1.5 689,273 - +0.6 689,289 - -0.3 689,340 - HMPREF1078_RS02865 0.12 -0.8 689,379 - HMPREF1078_RS02865 0.21 -0.1 689,379 - HMPREF1078_RS02865 0.21 -2.5 689,379 - HMPREF1078_RS02865 0.21 -0.6 689,488 - HMPREF1078_RS02865 0.46 -1.4 689,617 - HMPREF1078_RS02865 0.76 -1.4 689,732 + -1.4 689,732 + -1.1 689,733 - -0.1 689,733 - +1.8 689,733 - +1.0 689,750 - -0.2 689,769 - -0.8 689,832 + HMPREF1078_RS02870 0.17 -0.4 689,846 + HMPREF1078_RS02870 0.18 -0.8 689,936 + HMPREF1078_RS02870 0.31 -0.6 689,942 + HMPREF1078_RS02870 0.31 -1.0 689,942 + HMPREF1078_RS02870 0.31 +0.2 689,943 - HMPREF1078_RS02870 0.32 -1.2 689,943 - HMPREF1078_RS02870 0.32 -1.1 689,943 - HMPREF1078_RS02870 0.32 -0.4 689,966 - HMPREF1078_RS02870 0.35 +0.2 689,974 + HMPREF1078_RS02870 0.36 -0.8 690,028 - HMPREF1078_RS02870 0.43 -0.8 690,028 - HMPREF1078_RS02870 0.43 -0.6 690,051 + HMPREF1078_RS02870 0.46 -1.8 690,138 + HMPREF1078_RS02870 0.58 -1.1 690,284 + HMPREF1078_RS02870 0.78 -2.6 690,338 + HMPREF1078_RS02870 0.85 -0.8 690,371 - HMPREF1078_RS02870 0.90 +0.5 690,371 - HMPREF1078_RS02870 0.90 +0.9 690,406 - -1.0 690,426 + +1.2 690,427 - -2.3 690,432 - -1.3 690,438 - +1.2 690,438 - +1.4 690,450 - -0.9 690,469 - -0.6 690,469 - -1.6 690,613 - -1.4
Or see this region's nucleotide sequence