Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00285 and HMPREF1078_RS00290 are separated by 33 nucleotides HMPREF1078_RS00290 and HMPREF1078_RS00295 are separated by 59 nucleotides HMPREF1078_RS00295 and HMPREF1078_RS00300 are separated by 106 nucleotides HMPREF1078_RS00300 and HMPREF1078_RS00305 are separated by 477 nucleotides
HMPREF1078_RS00285: HMPREF1078_RS00285 - threonine--tRNA ligase, at 60,938 to 62,893
_RS00285
HMPREF1078_RS00290: HMPREF1078_RS00290 - translation initiation factor IF-3, at 62,927 to 63,541
_RS00290
HMPREF1078_RS00295: HMPREF1078_RS00295 - 50S ribosomal protein L35, at 63,601 to 63,798
_RS00295
HMPREF1078_RS00300: HMPREF1078_RS00300 - 50S ribosomal protein L20, at 63,905 to 64,249
_RS00300
HMPREF1078_RS00305: HMPREF1078_RS00305 - family 20 glycosylhydrolase, at 64,727 to 66,901
_RS00305
Position (kb) 63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.571 kb on + strand at 63.585 kb on + strand at 63.606 kb on + strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.732 kb on + strand, within HMPREF1078_RS00295 at 63.732 kb on + strand, within HMPREF1078_RS00295 at 63.753 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.774 kb on + strand, within HMPREF1078_RS00295 at 63.796 kb on + strand at 63.796 kb on + strand at 63.810 kb on + strand at 63.821 kb on + strand at 63.856 kb on + strand at 64.330 kb on + strand at 64.330 kb on + strand at 64.330 kb on + strand at 64.331 kb on - strand at 64.337 kb on + strand at 64.337 kb on + strand at 64.338 kb on - strand at 64.397 kb on + strand at 64.459 kb on + strand at 64.460 kb on - strand at 64.460 kb on - strand at 64.472 kb on + strand at 64.473 kb on - strand at 64.473 kb on - strand at 64.504 kb on + strand at 64.505 kb on - strand at 64.519 kb on + strand at 64.519 kb on + strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.540 kb on + strand at 64.540 kb on + strand at 64.544 kb on + strand at 64.544 kb on + strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.552 kb on + strand at 64.552 kb on + strand at 64.553 kb on - strand at 64.553 kb on - strand at 64.553 kb on - strand at 64.568 kb on + strand at 64.568 kb on + strand at 64.569 kb on - strand at 64.598 kb on + strand at 64.614 kb on - strand at 64.627 kb on - strand at 64.635 kb on + strand at 64.636 kb on - strand at 64.659 kb on + strand at 64.660 kb on - strand at 64.684 kb on + strand at 64.684 kb on + strand at 64.685 kb on - strand at 64.685 kb on - strand at 64.687 kb on - strand at 64.722 kb on + strand at 64.723 kb on - strand at 64.726 kb on + strand at 64.727 kb on - strand at 64.732 kb on - strand at 64.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 63,571 + +1.2 63,585 + +0.2 63,606 + -0.3 63,618 + +1.2 63,618 + +0.2 63,732 + HMPREF1078_RS00295 0.66 -1.8 63,732 + HMPREF1078_RS00295 0.66 -1.6 63,753 + HMPREF1078_RS00295 0.77 -1.3 63,764 + HMPREF1078_RS00295 0.82 -0.8 63,764 + HMPREF1078_RS00295 0.82 +1.2 63,764 + HMPREF1078_RS00295 0.82 -3.6 63,774 + HMPREF1078_RS00295 0.87 -1.2 63,796 + -0.4 63,796 + -0.5 63,810 + -0.3 63,821 + -3.3 63,856 + +0.2 64,330 + -0.7 64,330 + +0.3 64,330 + +0.2 64,331 - -0.0 64,337 + +0.2 64,337 + +0.9 64,338 - +0.6 64,397 + -2.0 64,459 + -1.7 64,460 - +0.6 64,460 - +1.2 64,472 + +1.3 64,473 - -1.9 64,473 - -2.9 64,504 + +1.2 64,505 - +0.0 64,519 + +1.2 64,519 + +0.5 64,520 - -0.2 64,520 - -2.8 64,520 - -0.8 64,520 - -1.0 64,520 - -0.7 64,520 - -0.4 64,523 + +0.7 64,523 + -0.4 64,523 + -0.5 64,523 + -1.9 64,523 + -3.3 64,524 - -2.8 64,524 - -0.5 64,524 - -1.3 64,524 - -0.4 64,540 + -0.2 64,540 + -1.0 64,544 + +2.2 64,544 + -0.1 64,545 - -2.1 64,545 - -0.5 64,545 - -0.4 64,545 - -1.8 64,545 - +1.6 64,552 + +0.6 64,552 + -1.4 64,553 - +1.0 64,553 - -1.1 64,553 - -3.4 64,568 + -1.2 64,568 + +1.4 64,569 - -2.3 64,598 + -0.5 64,614 - -2.0 64,627 - +0.2 64,635 + +0.9 64,636 - -3.0 64,659 + +0.2 64,660 - +0.6 64,684 + +0.2 64,684 + -0.4 64,685 - -0.2 64,685 - -1.1 64,687 - +0.4 64,722 + +0.2 64,723 - -2.8 64,726 + -0.8 64,727 - -0.4 64,732 - -0.2 64,758 + -1.1
Or see this region's nucleotide sequence