Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19705

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02645 and HMPREF1078_RS02650 are separated by 5 nucleotidesHMPREF1078_RS02650 and HMPREF1078_RS19705 are separated by 4 nucleotidesHMPREF1078_RS19705 and HMPREF1078_RS02660 are separated by 199 nucleotides HMPREF1078_RS02645: HMPREF1078_RS02645 - glycosyltransferase family 2 protein, at 658,170 to 659,159 _RS02645 HMPREF1078_RS02650: HMPREF1078_RS02650 - acyltransferase family protein, at 659,165 to 660,100 _RS02650 HMPREF1078_RS19705: HMPREF1078_RS19705 - hypothetical protein, at 660,105 to 660,254 _RS19705 HMPREF1078_RS02660: HMPREF1078_RS02660 - oligosaccharide flippase family protein, at 660,454 to 661,983 _RS02660 Position (kb) 660 661Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 659.107 kb on + strandat 659.115 kb on + strandat 659.116 kb on - strandat 659.120 kb on + strandat 659.142 kb on + strandat 659.221 kb on + strandat 659.222 kb on - strandat 659.255 kb on - strandat 659.276 kb on - strand, within HMPREF1078_RS02650at 659.277 kb on + strand, within HMPREF1078_RS02650at 659.277 kb on + strand, within HMPREF1078_RS02650at 659.278 kb on - strand, within HMPREF1078_RS02650at 659.284 kb on + strand, within HMPREF1078_RS02650at 659.299 kb on + strand, within HMPREF1078_RS02650at 659.333 kb on + strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.334 kb on - strand, within HMPREF1078_RS02650at 659.336 kb on - strand, within HMPREF1078_RS02650at 659.336 kb on - strand, within HMPREF1078_RS02650at 659.386 kb on + strand, within HMPREF1078_RS02650at 659.393 kb on + strand, within HMPREF1078_RS02650at 659.393 kb on + strand, within HMPREF1078_RS02650at 659.393 kb on + strand, within HMPREF1078_RS02650at 659.394 kb on - strand, within HMPREF1078_RS02650at 659.394 kb on - strand, within HMPREF1078_RS02650at 659.457 kb on - strand, within HMPREF1078_RS02650at 659.457 kb on - strand, within HMPREF1078_RS02650at 659.458 kb on + strand, within HMPREF1078_RS02650at 659.458 kb on + strand, within HMPREF1078_RS02650at 659.531 kb on + strand, within HMPREF1078_RS02650at 659.531 kb on + strand, within HMPREF1078_RS02650at 659.531 kb on + strand, within HMPREF1078_RS02650at 659.531 kb on + strand, within HMPREF1078_RS02650at 659.532 kb on - strand, within HMPREF1078_RS02650at 659.536 kb on + strand, within HMPREF1078_RS02650at 659.536 kb on + strand, within HMPREF1078_RS02650at 659.536 kb on + strand, within HMPREF1078_RS02650at 659.537 kb on - strand, within HMPREF1078_RS02650at 659.537 kb on - strand, within HMPREF1078_RS02650at 659.548 kb on + strand, within HMPREF1078_RS02650at 659.625 kb on + strand, within HMPREF1078_RS02650at 659.625 kb on + strand, within HMPREF1078_RS02650at 659.625 kb on + strand, within HMPREF1078_RS02650at 659.625 kb on + strand, within HMPREF1078_RS02650at 659.625 kb on + strand, within HMPREF1078_RS02650at 659.626 kb on - strand, within HMPREF1078_RS02650at 659.659 kb on - strand, within HMPREF1078_RS02650at 659.659 kb on - strand, within HMPREF1078_RS02650at 659.682 kb on + strand, within HMPREF1078_RS02650at 659.683 kb on - strand, within HMPREF1078_RS02650at 659.760 kb on + strand, within HMPREF1078_RS02650at 659.763 kb on - strand, within HMPREF1078_RS02650at 659.771 kb on + strand, within HMPREF1078_RS02650at 659.771 kb on + strand, within HMPREF1078_RS02650at 659.775 kb on + strand, within HMPREF1078_RS02650at 659.821 kb on + strand, within HMPREF1078_RS02650at 659.839 kb on + strand, within HMPREF1078_RS02650at 659.885 kb on + strand, within HMPREF1078_RS02650at 659.914 kb on + strand, within HMPREF1078_RS02650at 660.005 kb on - strand, within HMPREF1078_RS02650at 660.070 kb on + strandat 660.071 kb on - strandat 660.074 kb on + strandat 660.075 kb on - strandat 660.075 kb on - strandat 660.080 kb on + strandat 660.159 kb on - strand, within HMPREF1078_RS19705at 660.197 kb on + strand, within HMPREF1078_RS19705at 660.198 kb on - strand, within HMPREF1078_RS19705at 660.215 kb on + strand, within HMPREF1078_RS19705at 660.234 kb on - strand, within HMPREF1078_RS19705at 660.248 kb on + strandat 660.267 kb on - strandat 660.272 kb on + strandat 660.416 kb on + strandat 660.416 kb on + strandat 660.416 kb on + strandat 660.417 kb on - strandat 660.417 kb on - strandat 660.421 kb on + strandat 660.421 kb on + strandat 660.421 kb on + strandat 660.421 kb on + strandat 660.423 kb on + strandat 660.442 kb on - strandat 660.480 kb on + strandat 660.493 kb on - strandat 660.536 kb on + strandat 660.558 kb on + strandat 660.580 kb on + strandat 660.580 kb on + strandat 660.580 kb on + strandat 660.581 kb on - strandat 660.604 kb on + strandat 660.683 kb on + strand, within HMPREF1078_RS02660at 660.684 kb on - strand, within HMPREF1078_RS02660at 660.684 kb on - strand, within HMPREF1078_RS02660at 660.805 kb on + strand, within HMPREF1078_RS02660at 660.805 kb on + strand, within HMPREF1078_RS02660at 660.806 kb on - strand, within HMPREF1078_RS02660at 660.806 kb on - strand, within HMPREF1078_RS02660at 660.806 kb on - strand, within HMPREF1078_RS02660at 660.806 kb on - strand, within HMPREF1078_RS02660at 660.807 kb on + strand, within HMPREF1078_RS02660at 660.807 kb on + strand, within HMPREF1078_RS02660at 660.808 kb on - strand, within HMPREF1078_RS02660at 660.808 kb on - strand, within HMPREF1078_RS02660at 660.809 kb on + strand, within HMPREF1078_RS02660at 660.809 kb on + strand, within HMPREF1078_RS02660at 660.810 kb on - strand, within HMPREF1078_RS02660at 660.811 kb on + strand, within HMPREF1078_RS02660at 660.811 kb on + strand, within HMPREF1078_RS02660at 660.811 kb on + strand, within HMPREF1078_RS02660at 660.828 kb on + strand, within HMPREF1078_RS02660at 660.833 kb on - strand, within HMPREF1078_RS02660at 660.858 kb on - strand, within HMPREF1078_RS02660at 660.867 kb on + strand, within HMPREF1078_RS02660at 660.936 kb on - strand, within HMPREF1078_RS02660at 660.952 kb on + strand, within HMPREF1078_RS02660at 660.958 kb on - strand, within HMPREF1078_RS02660at 660.958 kb on - strand, within HMPREF1078_RS02660at 660.959 kb on + strand, within HMPREF1078_RS02660at 660.960 kb on - strand, within HMPREF1078_RS02660at 661.146 kb on + strand, within HMPREF1078_RS02660at 661.155 kb on + strand, within HMPREF1078_RS02660

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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659,107 + -0.6
659,115 + -0.3
659,116 - -2.2
659,120 + -2.9
659,142 + -0.7
659,221 + -0.4
659,222 - -0.4
659,255 - -0.4
659,276 - HMPREF1078_RS02650 0.12 -0.4
659,277 + HMPREF1078_RS02650 0.12 -1.4
659,277 + HMPREF1078_RS02650 0.12 +1.3
659,278 - HMPREF1078_RS02650 0.12 -1.0
659,284 + HMPREF1078_RS02650 0.13 -0.7
659,299 + HMPREF1078_RS02650 0.14 +0.6
659,333 + HMPREF1078_RS02650 0.18 +0.4
659,334 - HMPREF1078_RS02650 0.18 +1.2
659,334 - HMPREF1078_RS02650 0.18 +1.2
659,334 - HMPREF1078_RS02650 0.18 -2.6
659,334 - HMPREF1078_RS02650 0.18 -0.8
659,334 - HMPREF1078_RS02650 0.18 +0.5
659,334 - HMPREF1078_RS02650 0.18 -0.0
659,334 - HMPREF1078_RS02650 0.18 -0.5
659,334 - HMPREF1078_RS02650 0.18 +0.6
659,334 - HMPREF1078_RS02650 0.18 -2.4
659,336 - HMPREF1078_RS02650 0.18 +0.6
659,336 - HMPREF1078_RS02650 0.18 -0.8
659,386 + HMPREF1078_RS02650 0.24 +2.2
659,393 + HMPREF1078_RS02650 0.24 +0.6
659,393 + HMPREF1078_RS02650 0.24 +1.2
659,393 + HMPREF1078_RS02650 0.24 +1.2
659,394 - HMPREF1078_RS02650 0.24 -1.2
659,394 - HMPREF1078_RS02650 0.24 +0.8
659,457 - HMPREF1078_RS02650 0.31 +0.7
659,457 - HMPREF1078_RS02650 0.31 -0.7
659,458 + HMPREF1078_RS02650 0.31 -0.8
659,458 + HMPREF1078_RS02650 0.31 +0.6
659,531 + HMPREF1078_RS02650 0.39 -0.9
659,531 + HMPREF1078_RS02650 0.39 -1.1
659,531 + HMPREF1078_RS02650 0.39 +0.5
659,531 + HMPREF1078_RS02650 0.39 +0.4
659,532 - HMPREF1078_RS02650 0.39 -1.4
659,536 + HMPREF1078_RS02650 0.40 +1.2
659,536 + HMPREF1078_RS02650 0.40 -0.1
659,536 + HMPREF1078_RS02650 0.40 -0.8
659,537 - HMPREF1078_RS02650 0.40 +0.9
659,537 - HMPREF1078_RS02650 0.40 +0.2
659,548 + HMPREF1078_RS02650 0.41 -1.6
659,625 + HMPREF1078_RS02650 0.49 -2.8
659,625 + HMPREF1078_RS02650 0.49 +1.4
659,625 + HMPREF1078_RS02650 0.49 -0.8
659,625 + HMPREF1078_RS02650 0.49 +0.2
659,625 + HMPREF1078_RS02650 0.49 +0.2
659,626 - HMPREF1078_RS02650 0.49 +0.6
659,659 - HMPREF1078_RS02650 0.53 +0.2
659,659 - HMPREF1078_RS02650 0.53 -1.1
659,682 + HMPREF1078_RS02650 0.55 -0.4
659,683 - HMPREF1078_RS02650 0.55 +0.1
659,760 + HMPREF1078_RS02650 0.64 -1.4
659,763 - HMPREF1078_RS02650 0.64 -1.0
659,771 + HMPREF1078_RS02650 0.65 -1.9
659,771 + HMPREF1078_RS02650 0.65 +2.9
659,775 + HMPREF1078_RS02650 0.65 -0.7
659,821 + HMPREF1078_RS02650 0.70 -0.6
659,839 + HMPREF1078_RS02650 0.72 -0.4
659,885 + HMPREF1078_RS02650 0.77 -1.6
659,914 + HMPREF1078_RS02650 0.80 -0.6
660,005 - HMPREF1078_RS02650 0.90 -0.4
660,070 + +2.2
660,071 - +0.6
660,074 + -0.8
660,075 - -1.8
660,075 - -1.4
660,080 + +1.2
660,159 - HMPREF1078_RS19705 0.36 +1.2
660,197 + HMPREF1078_RS19705 0.61 -3.0
660,198 - HMPREF1078_RS19705 0.62 -2.5
660,215 + HMPREF1078_RS19705 0.73 -1.4
660,234 - HMPREF1078_RS19705 0.86 -1.6
660,248 + -0.3
660,267 - +0.3
660,272 + -0.8
660,416 + +1.2
660,416 + -0.8
660,416 + -2.2
660,417 - +0.4
660,417 - -0.7
660,421 + -0.2
660,421 + -2.2
660,421 + -1.0
660,421 + -1.1
660,423 + +1.5
660,442 - +1.1
660,480 + +1.4
660,493 - +0.5
660,536 + -1.1
660,558 + +0.4
660,580 + -1.9
660,580 + -0.8
660,580 + -1.8
660,581 - +0.2
660,604 + -1.1
660,683 + HMPREF1078_RS02660 0.15 -1.8
660,684 - HMPREF1078_RS02660 0.15 -0.8
660,684 - HMPREF1078_RS02660 0.15 -0.8
660,805 + HMPREF1078_RS02660 0.23 +0.7
660,805 + HMPREF1078_RS02660 0.23 +0.5
660,806 - HMPREF1078_RS02660 0.23 +1.2
660,806 - HMPREF1078_RS02660 0.23 +2.4
660,806 - HMPREF1078_RS02660 0.23 -0.0
660,806 - HMPREF1078_RS02660 0.23 +0.4
660,807 + HMPREF1078_RS02660 0.23 -2.9
660,807 + HMPREF1078_RS02660 0.23 +1.2
660,808 - HMPREF1078_RS02660 0.23 +0.6
660,808 - HMPREF1078_RS02660 0.23 -0.8
660,809 + HMPREF1078_RS02660 0.23 +0.1
660,809 + HMPREF1078_RS02660 0.23 +0.5
660,810 - HMPREF1078_RS02660 0.23 -0.8
660,811 + HMPREF1078_RS02660 0.23 +1.2
660,811 + HMPREF1078_RS02660 0.23 -0.9
660,811 + HMPREF1078_RS02660 0.23 +0.2
660,828 + HMPREF1078_RS02660 0.24 -0.2
660,833 - HMPREF1078_RS02660 0.25 -2.2
660,858 - HMPREF1078_RS02660 0.26 -2.1
660,867 + HMPREF1078_RS02660 0.27 +1.0
660,936 - HMPREF1078_RS02660 0.32 -0.4
660,952 + HMPREF1078_RS02660 0.33 -1.6
660,958 - HMPREF1078_RS02660 0.33 -1.5
660,958 - HMPREF1078_RS02660 0.33 -1.8
660,959 + HMPREF1078_RS02660 0.33 +0.4
660,960 - HMPREF1078_RS02660 0.33 -0.7
661,146 + HMPREF1078_RS02660 0.45 +4.0
661,155 + HMPREF1078_RS02660 0.46 -2.0

Or see this region's nucleotide sequence